[INFO] fetching crate phyloalifold 0.1.3...
[INFO] testing phyloalifold-0.1.3 against beta-2025-10-28 for beta-1.92-2
[INFO] extracting crate phyloalifold 0.1.3 into /workspace/builds/worker-6-tc2/source
[INFO] started tweaking crates.io crate phyloalifold 0.1.3
[INFO] finished tweaking crates.io crate phyloalifold 0.1.3
[INFO] tweaked toml for crates.io crate phyloalifold 0.1.3 written to /workspace/builds/worker-6-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate phyloalifold 0.1.3 on toolchain beta-2025-10-28
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate phyloalifold 0.1.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6149908c0f432ed1d8b48e378d29b750febe5e4d1c94609a511fbd6c502df690
[INFO] running `Command { std: "docker" "start" "-a" "6149908c0f432ed1d8b48e378d29b750febe5e4d1c94609a511fbd6c502df690", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6149908c0f432ed1d8b48e378d29b750febe5e4d1c94609a511fbd6c502df690", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6149908c0f432ed1d8b48e378d29b750febe5e4d1c94609a511fbd6c502df690", kill_on_drop: false }`
[INFO] [stdout] 6149908c0f432ed1d8b48e378d29b750febe5e4d1c94609a511fbd6c502df690
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2953da84888f01d338a06be2567d6353870a2de3cb8b50dbfd486b512388fbe9
[INFO] running `Command { std: "docker" "start" "-a" "2953da84888f01d338a06be2567d6353870a2de3cb8b50dbfd486b512388fbe9", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] [stderr]    Compiling proc-macro2 v1.0.9
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling syn v1.0.16
[INFO] [stderr]    Compiling serde v1.0.104
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling libc v0.2.67
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling either v1.5.3
[INFO] [stderr]    Compiling ryu v1.0.2
[INFO] [stderr]    Compiling matrixmultiply v0.1.15
[INFO] [stderr]    Compiling void v1.0.2
[INFO] [stderr]    Compiling ucd-util v0.1.7
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]    Compiling ndarray v0.9.1
[INFO] [stderr]    Compiling rawpointer v0.1.0
[INFO] [stderr]    Compiling unreachable v1.0.0
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling itertools v0.6.5
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling aho-corasick v0.6.10
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling itoa v0.4.5
[INFO] [stderr]    Compiling utf8-ranges v1.0.4
[INFO] [stderr]    Compiling lazy_static v0.1.16
[INFO] [stderr]    Compiling bit-vec v0.4.4
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling approx v0.1.1
[INFO] [stderr]    Compiling lazy_static v0.2.11
[INFO] [stderr]    Compiling unicode-width v0.1.7
[INFO] [stderr]    Compiling bytecount v0.3.2
[INFO] [stderr]    Compiling getopts v0.2.21
[INFO] [stderr]    Compiling quote v1.0.3
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling scoped_threadpool v0.1.9
[INFO] [stderr]    Compiling bit-set v0.4.0
[INFO] [stderr]    Compiling itertools v0.7.11
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling time v0.1.42
[INFO] [stderr]    Compiling num_cpus v1.12.0
[INFO] [stderr]    Compiling bio-seq-algos v0.1.15
[INFO] [stderr]    Compiling rna-ss-params v0.1.16
[INFO] [stderr]    Compiling num-traits v0.1.43
[INFO] [stderr]    Compiling num-complex v0.1.43
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v0.5.2
[INFO] [stderr]    Compiling serde_derive v1.0.104
[INFO] [stderr]    Compiling bstr v0.2.11
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling bio v0.20.3
[INFO] [stderr]    Compiling rna-algos v0.1.14
[INFO] [stderr]    Compiling phyloprob v0.1.2
[INFO] [stderr]    Compiling phylofold v0.1.2
[INFO] [stderr]    Compiling phyloalifold v0.1.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]   --> src/main.rs:40:72
[INFO] [stdout]    |
[INFO] [stdout] 40 |     Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())}
[INFO] [stdout]    |                                                                        ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]    = note: `#[warn(non_fmt_panics)]` (part of `#[warn(rust_2021_compatibility)]`) on by default
[INFO] [stdout] help: add a "{}" format string to `Display` the message
[INFO] [stdout]    |
[INFO] [stdout] 40 |     Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())}
[INFO] [stdout]    |                                                                        +++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 21.34s
[INFO] running `Command { std: "docker" "inspect" "2953da84888f01d338a06be2567d6353870a2de3cb8b50dbfd486b512388fbe9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2953da84888f01d338a06be2567d6353870a2de3cb8b50dbfd486b512388fbe9", kill_on_drop: false }`
[INFO] [stdout] 2953da84888f01d338a06be2567d6353870a2de3cb8b50dbfd486b512388fbe9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] dc3bfad64818603f88688bcd9eec5bd0c7bb5e61700e321e490dba6336abe91e
[INFO] running `Command { std: "docker" "start" "-a" "dc3bfad64818603f88688bcd9eec5bd0c7bb5e61700e321e490dba6336abe91e", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] [stderr]    Compiling phyloalifold v0.1.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]   --> src/main.rs:40:72
[INFO] [stdout]    |
[INFO] [stdout] 40 |     Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())}
[INFO] [stdout]    |                                                                        ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]    = note: `#[warn(non_fmt_panics)]` (part of `#[warn(rust_2021_compatibility)]`) on by default
[INFO] [stdout] help: add a "{}" format string to `Display` the message
[INFO] [stdout]    |
[INFO] [stdout] 40 |     Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())}
[INFO] [stdout]    |                                                                        +++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.91s
[INFO] running `Command { std: "docker" "inspect" "dc3bfad64818603f88688bcd9eec5bd0c7bb5e61700e321e490dba6336abe91e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dc3bfad64818603f88688bcd9eec5bd0c7bb5e61700e321e490dba6336abe91e", kill_on_drop: false }`
[INFO] [stdout] dc3bfad64818603f88688bcd9eec5bd0c7bb5e61700e321e490dba6336abe91e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] e83269d0a8ce83a97ccb540192c35c1c1c8f884576964a49419849fdfed2e17b
[INFO] running `Command { std: "docker" "start" "-a" "e83269d0a8ce83a97ccb540192c35c1c1c8f884576964a49419849fdfed2e17b", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] [stderr] warning: panic message is not a string literal
[INFO] [stderr]   --> src/main.rs:40:72
[INFO] [stderr]    |
[INFO] [stderr] 40 |     Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())}
[INFO] [stderr]    |                                                                        ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stderr]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stderr]    = note: `#[warn(non_fmt_panics)]` (part of `#[warn(rust_2021_compatibility)]`) on by default
[INFO] [stderr] help: add a "{}" format string to `Display` the message
[INFO] [stderr]    |
[INFO] [stderr] 40 |     Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())}
[INFO] [stderr]    |                                                                        +++++
[INFO] [stderr] 
[INFO] [stderr] warning: `phyloalifold` (bin "phyloalifold" test) generated 1 warning (run `cargo fix --bin "phyloalifold" -p phyloalifold --tests` to apply 1 suggestion)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/phyloalifold-2b35adee8fcadf93)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/phyloalifold-16b0b7a09fcda358)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests phyloalifold
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "e83269d0a8ce83a97ccb540192c35c1c1c8f884576964a49419849fdfed2e17b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e83269d0a8ce83a97ccb540192c35c1c1c8f884576964a49419849fdfed2e17b", kill_on_drop: false }`
[INFO] [stdout] e83269d0a8ce83a97ccb540192c35c1c1c8f884576964a49419849fdfed2e17b
