[INFO] fetching crate ncbi-vdb-sys 0.1.6...
[INFO] testing ncbi-vdb-sys-0.1.6 against beta-2025-10-28 for beta-1.92-2
[INFO] extracting crate ncbi-vdb-sys 0.1.6 into /workspace/builds/worker-4-tc2/source
[INFO] removed /workspace/builds/worker-4-tc2/source/.cargo/config.toml
[INFO] started tweaking crates.io crate ncbi-vdb-sys 0.1.6
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate ncbi-vdb-sys 0.1.6
[INFO] tweaked toml for crates.io crate ncbi-vdb-sys 0.1.6 written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate ncbi-vdb-sys 0.1.6 on toolchain beta-2025-10-28
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate ncbi-vdb-sys 0.1.6 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2c573b719b152bcd2d2c5855feee897bf0bff6dcb0a475ab3c5e637e76b210db
[INFO] running `Command { std: "docker" "start" "-a" "2c573b719b152bcd2d2c5855feee897bf0bff6dcb0a475ab3c5e637e76b210db", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2c573b719b152bcd2d2c5855feee897bf0bff6dcb0a475ab3c5e637e76b210db", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2c573b719b152bcd2d2c5855feee897bf0bff6dcb0a475ab3c5e637e76b210db", kill_on_drop: false }`
[INFO] [stdout] 2c573b719b152bcd2d2c5855feee897bf0bff6dcb0a475ab3c5e637e76b210db
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0b79fb9d35ed3906a28d5142a0b2676e7bf2c398998b4210f2a4faafdcd73b56
[INFO] running `Command { std: "docker" "start" "-a" "0b79fb9d35ed3906a28d5142a0b2676e7bf2c398998b4210f2a4faafdcd73b56", kill_on_drop: false }`
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling libc v0.2.172
[INFO] [stderr]    Compiling syn v2.0.101
[INFO] [stderr]    Compiling walkdir v2.5.0
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr] error: failed to run custom build command for `ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/ncbi-vdb-sys-82e8f725fa2a604f/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=build.rs
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/libs
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/interfaces
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/setup/konfigure.perl
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/Makefile.env
[INFO] [stderr]   Configuring NCBI-VDB package
[INFO] [stderr]   checking system type... Linux
[INFO] [stderr]   checking OS distributor... 
[INFO] [stderr]   checking machine architecture... x86_64
[INFO] [stderr]   checking for supported architecture... x86_64 (64 bits) is supported
[INFO] [stderr]   checking for supported OS... Linux (linux) is supported
[INFO] [stderr]   checking for supported tool chain... gcc tool chain is supported
[INFO] [stderr]   checking for gcc... gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
[INFO] [stderr]   checking for g++... yes
[INFO] [stderr]   checking for Python 3... /usr/bin/python3
[INFO] [stderr]   checking whether g++ accepts -static-libstdc++... no
[INFO] [stderr]   checking for cmake... yes
[INFO] [stderr]   checking for fuse library... no
[INFO] [stderr]   checking for hdf5 library... no
[INFO] [stderr]   checking for magic library... no
[INFO] [stderr]   checking for xml2 library... no
[INFO] [stderr] 
[INFO] [stderr]   configure: creating 'build/ld.linux.exe_cmd.sh'
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   cannot open build/ld.linux.exe_cmd.sh to write at konfigure.perl line 885.
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (84) panicked at build.rs:37:13:
[INFO] [stderr]   Configure failed
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5e5d2f73d8a2 - std::backtrace_rs::backtrace::libunwind::trace::h16acf28769fcd909
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x5e5d2f73d8a2 - std::backtrace_rs::backtrace::trace_unsynchronized::hb5541aa5d4f92513
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x5e5d2f73d8a2 - std::sys::backtrace::_print_fmt::h8ac8268cb667a306
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x5e5d2f73d8a2 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h47627beda0767f4c
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x5e5d2f74cccf - core::fmt::rt::Argument::fmt::h686a01ad57c1c92a
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/rt.rs:173:76
[INFO] [stderr]      5:     0x5e5d2f74cccf - core::fmt::write::h8a63064c67176fd8
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/mod.rs:1469:25
[INFO] [stderr]      6:     0x5e5d2f7137e3 - std::io::default_write_fmt::hc257f38f86d39af6
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x5e5d2f7137e3 - std::io::Write::write_fmt::h5e9b646cef91150b
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:1954:13
[INFO] [stderr]      8:     0x5e5d2f71d0a2 - std::sys::backtrace::BacktraceLock::print::h4634d27c0afbaebb
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x5e5d2f71edcc - std::panicking::default_hook::{{closure}}::h23e0299d4738b766
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:301:27
[INFO] [stderr]     10:     0x5e5d2f71ec26 - std::panicking::default_hook::hfeec6294e8751b62
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:328:9
[INFO] [stderr]     11:     0x5e5d2f71f3a5 - std::panicking::panic_with_hook::hd57cd463d793ed79
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:834:13
[INFO] [stderr]     12:     0x5e5d2f71f206 - std::panicking::panic_handler::{{closure}}::hddd6216c3fddee3b
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:700:13
[INFO] [stderr]     13:     0x5e5d2f71d1d9 - std::sys::backtrace::__rust_end_short_backtrace::h5e7a56f283378525
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:174:18
[INFO] [stderr]     14:     0x5e5d2f70814d - __rustc[256c90bb7e548b45]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:698:5
[INFO] [stderr]     15:     0x5e5d2f750330 - core::panicking::panic_fmt::hf19c198748ef6a95
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panicking.rs:80:14
[INFO] [stderr]     16:     0x5e5d2f6eba8b - build_script_build::main::hb8296ccf0aacc844
[INFO] [stderr]     17:     0x5e5d2f6ec303 - core::ops::function::FnOnce::call_once::h73f8a57aaa098398
[INFO] [stderr]     18:     0x5e5d2f6ebf56 - std::sys::backtrace::__rust_begin_short_backtrace::h97d0760e85161f33
[INFO] [stderr]     19:     0x5e5d2f6ebe49 - std::rt::lang_start::{{closure}}::h23f7e931b33701f1
[INFO] [stderr]     20:     0x5e5d2f7150a0 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hdf957eac011d0136
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:287:21
[INFO] [stderr]     21:     0x5e5d2f7150a0 - std::panicking::catch_unwind::do_call::h9ff550f7799115e1
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40
[INFO] [stderr]     22:     0x5e5d2f7150a0 - std::panicking::catch_unwind::ha7ce46787bb12905
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19
[INFO] [stderr]     23:     0x5e5d2f7150a0 - std::panic::catch_unwind::h625b36596def7d39
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14
[INFO] [stderr]     24:     0x5e5d2f7150a0 - std::rt::lang_start_internal::{{closure}}::h4cbc9430de699e2c
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/rt.rs:175:24
[INFO] [stderr]     25:     0x5e5d2f7150a0 - std::panicking::catch_unwind::do_call::h5af2f11409a22e3e
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40
[INFO] [stderr]     26:     0x5e5d2f7150a0 - std::panicking::catch_unwind::hf64cf7b0d8070f52
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19
[INFO] [stderr]     27:     0x5e5d2f7150a0 - std::panic::catch_unwind::h480b74763390cdcf
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14
[INFO] [stderr]     28:     0x5e5d2f7150a0 - std::rt::lang_start_internal::h4b3d04f698aef094
[INFO] [stderr]                                  at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/rt.rs:171:5
[INFO] [stderr]     29:     0x5e5d2f6ebe31 - std::rt::lang_start::h6dafa9a2cd164106
[INFO] [stderr]     30:     0x5e5d2f6ef305 - main
[INFO] [stderr]     31:     0x79963a0b41ca - <unknown>
[INFO] [stderr]     32:     0x79963a0b428b - __libc_start_main
[INFO] [stderr]     33:     0x5e5d2f6eb2a5 - _start
[INFO] [stderr]     34:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "0b79fb9d35ed3906a28d5142a0b2676e7bf2c398998b4210f2a4faafdcd73b56", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0b79fb9d35ed3906a28d5142a0b2676e7bf2c398998b4210f2a4faafdcd73b56", kill_on_drop: false }`
[INFO] [stdout] 0b79fb9d35ed3906a28d5142a0b2676e7bf2c398998b4210f2a4faafdcd73b56
