[INFO] fetching crate pombase-gocam 0.100.0...
[INFO] testing pombase-gocam-0.100.0 against beta-2025-10-28 for beta-1.92-2
[INFO] extracting crate pombase-gocam 0.100.0 into /workspace/builds/worker-2-tc2/source
[INFO] started tweaking crates.io crate pombase-gocam 0.100.0
[INFO] finished tweaking crates.io crate pombase-gocam 0.100.0
[INFO] tweaked toml for crates.io crate pombase-gocam 0.100.0 written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate pombase-gocam 0.100.0 on toolchain beta-2025-10-28
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate pombase-gocam 0.100.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 428930b0e6fc12a5d104962bf0dbfcdb43cf671e3c63280a33085e4e2df95eac
[INFO] running `Command { std: "docker" "start" "-a" "428930b0e6fc12a5d104962bf0dbfcdb43cf671e3c63280a33085e4e2df95eac", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "428930b0e6fc12a5d104962bf0dbfcdb43cf671e3c63280a33085e4e2df95eac", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "428930b0e6fc12a5d104962bf0dbfcdb43cf671e3c63280a33085e4e2df95eac", kill_on_drop: false }`
[INFO] [stdout] 428930b0e6fc12a5d104962bf0dbfcdb43cf671e3c63280a33085e4e2df95eac
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c59d2f67c12e7a06c8cd13607237b3cd6a82248f8477355b82dadf5fdf9a8026
[INFO] running `Command { std: "docker" "start" "-a" "c59d2f67c12e7a06c8cd13607237b3cd6a82248f8477355b82dadf5fdf9a8026", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling regex-syntax v0.8.6
[INFO] [stderr]    Compiling hashbrown v0.15.4
[INFO] [stderr]    Compiling phf_shared v0.11.3
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]    Compiling indexmap v2.9.0
[INFO] [stderr]    Compiling regex-automata v0.4.10
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling phf_macros v0.11.3
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling serde_yaml v0.9.34+deprecated
[INFO] [stderr]    Compiling regex v1.11.2
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]    Compiling petgraph v0.8.2
[INFO] [stderr]    Compiling pombase-gocam v0.100.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 29.60s
[INFO] running `Command { std: "docker" "inspect" "c59d2f67c12e7a06c8cd13607237b3cd6a82248f8477355b82dadf5fdf9a8026", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c59d2f67c12e7a06c8cd13607237b3cd6a82248f8477355b82dadf5fdf9a8026", kill_on_drop: false }`
[INFO] [stdout] c59d2f67c12e7a06c8cd13607237b3cd6a82248f8477355b82dadf5fdf9a8026
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 02efc026a278c26d7775bdd4ca835015da50bf16df444a01d3c1270c40501b27
[INFO] running `Command { std: "docker" "start" "-a" "02efc026a278c26d7775bdd4ca835015da50bf16df444a01d3c1270c40501b27", kill_on_drop: false }`
[INFO] [stderr]    Compiling pombase-gocam v0.100.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 6.57s
[INFO] running `Command { std: "docker" "inspect" "02efc026a278c26d7775bdd4ca835015da50bf16df444a01d3c1270c40501b27", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "02efc026a278c26d7775bdd4ca835015da50bf16df444a01d3c1270c40501b27", kill_on_drop: false }`
[INFO] [stdout] 02efc026a278c26d7775bdd4ca835015da50bf16df444a01d3c1270c40501b27
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 9869109cfe549071874dc76e08c6ac11b6cded4234d4aeee994a04300a4449a5
[INFO] running `Command { std: "docker" "start" "-a" "9869109cfe549071874dc76e08c6ac11b6cded4234d4aeee994a04300a4449a5", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/pombase_gocam-2fe61684604cf449)
[INFO] [stdout] 
[INFO] [stdout] running 21 tests
[INFO] [stdout] test graph::tests::parse_raw_test ... ok
[INFO] [stdout] test tests::retain_enabling_genes_test ... ok
[INFO] [stdout] test tests::model_activity_enabled_by_test ... ok
[INFO] [stdout] test tests::test_genes_enabling_activities ... ok
[INFO] [stdout] test tests::test_genes_in_model ... ok
[INFO] [stdout] test gocam_py::tests::parse_test ... ok
[INFO] [stdout] test tests::test_modified_genes_in_model ... ok
[INFO] [stdout] test tests::parse_test ... ok
[INFO] [stdout] test tests::test_node_rel_direction ... ok
[INFO] [stdout] test tests::retain_largest_subgraph_test ... ok
[INFO] [stdout] test raw::tests::parse_raw_test ... ok
[INFO] [stdout] test tests::location_of_chemical ... ok
[INFO] [stdout] test tests::remove_chemicals_inputs_outputs_only_test ... ok
[INFO] [stdout] test tests::remove_chemicals_test ... ok
[INFO] [stdout] test raw::tests::parse_raw_test_with_complement ... ok
[INFO] [stdout] test tests::merge_test ... ok
[INFO] [stdout] test tests::merge_test_three_models ... ok
[INFO] [stdout] test tests::merge_test_mss51_remove_chemicals ... ok
[INFO] [stdout] test tests::overlap_test ... ok
[INFO] [stdout] test tests::find_overlaps_test ... ok
[INFO] [stdout] test tests::merge_test_mss51 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 21 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.30s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests pombase_gocam
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test src/lib.rs - (line 17) ... ok
[INFO] [stdout] test src/raw.rs - raw (line 8) ... ok
[INFO] [stdout] test src/raw.rs - raw::GoCamRawModel (line 289) ... ok
[INFO] [stdout] test src/lib.rs - GoCamModel::new (line 221) ... ok
[INFO] [stdout] test src/lib.rs - parse_gocam_model (line 2253) ... ok
[INFO] [stdout] test src/raw.rs - raw::gocam_parse_raw (line 445) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.29s
[INFO] [stdout] 
[INFO] [stdout] all doctests ran in 1.34s; merged doctests compilation took 1.03s
[INFO] running `Command { std: "docker" "inspect" "9869109cfe549071874dc76e08c6ac11b6cded4234d4aeee994a04300a4449a5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9869109cfe549071874dc76e08c6ac11b6cded4234d4aeee994a04300a4449a5", kill_on_drop: false }`
[INFO] [stdout] 9869109cfe549071874dc76e08c6ac11b6cded4234d4aeee994a04300a4449a5