[INFO] fetching crate omics-molecule 0.1.0... [INFO] testing omics-molecule-0.1.0 against beta-2025-10-28 for beta-1.92-2 [INFO] extracting crate omics-molecule 0.1.0 into /workspace/builds/worker-1-tc2/source [INFO] started tweaking crates.io crate omics-molecule 0.1.0 [INFO] finished tweaking crates.io crate omics-molecule 0.1.0 [INFO] tweaked toml for crates.io crate omics-molecule 0.1.0 written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate omics-molecule 0.1.0 on toolchain beta-2025-10-28 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 1 package to latest compatible version [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b9a9601ad43f8f97588339fb7c9470bfe9af6ccbe0701871110f69208eb9c3e0 [INFO] running `Command { std: "docker" "start" "-a" "b9a9601ad43f8f97588339fb7c9470bfe9af6ccbe0701871110f69208eb9c3e0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b9a9601ad43f8f97588339fb7c9470bfe9af6ccbe0701871110f69208eb9c3e0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b9a9601ad43f8f97588339fb7c9470bfe9af6ccbe0701871110f69208eb9c3e0", kill_on_drop: false }` [INFO] [stdout] b9a9601ad43f8f97588339fb7c9470bfe9af6ccbe0701871110f69208eb9c3e0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7d251ba310fcaa6ff63b7c6dee2c98ee6d298f8ce155b9f16ce25c4a24a438ec [INFO] running `Command { std: "docker" "start" "-a" "7d251ba310fcaa6ff63b7c6dee2c98ee6d298f8ce155b9f16ce25c4a24a438ec", kill_on_drop: false }` [INFO] [stderr] Compiling omics-core v0.1.0 [INFO] [stderr] Compiling omics-molecule v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.49s [INFO] running `Command { std: "docker" "inspect" "7d251ba310fcaa6ff63b7c6dee2c98ee6d298f8ce155b9f16ce25c4a24a438ec", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7d251ba310fcaa6ff63b7c6dee2c98ee6d298f8ce155b9f16ce25c4a24a438ec", kill_on_drop: false }` [INFO] [stdout] 7d251ba310fcaa6ff63b7c6dee2c98ee6d298f8ce155b9f16ce25c4a24a438ec [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] faf95e97b2f6e4e4748fe3809e6a967ba18f93c2667f6f73daf607dba2db7346 [INFO] running `Command { std: "docker" "start" "-a" "faf95e97b2f6e4e4748fe3809e6a967ba18f93c2667f6f73daf607dba2db7346", kill_on_drop: false }` [INFO] [stderr] Compiling omics-molecule v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.78s [INFO] running `Command { std: "docker" "inspect" "faf95e97b2f6e4e4748fe3809e6a967ba18f93c2667f6f73daf607dba2db7346", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "faf95e97b2f6e4e4748fe3809e6a967ba18f93c2667f6f73daf607dba2db7346", kill_on_drop: false }` [INFO] [stdout] faf95e97b2f6e4e4748fe3809e6a967ba18f93c2667f6f73daf607dba2db7346 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] f0d5716b02d0f4ca5b76cad1e17a35291c54b8577ff2fa2e2f8614c06175b32b [INFO] running `Command { std: "docker" "start" "-a" "f0d5716b02d0f4ca5b76cad1e17a35291c54b8577ff2fa2e2f8614c06175b32b", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.02s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/omics_molecule-f79eff1298bd8f11) [INFO] [stdout] [INFO] [stdout] running 27 tests [INFO] [stdout] test compound::kind::tests::it_correctly_assigns_a_type_to_rna_nucleotides ... ok [INFO] [stdout] test compound::nucleotide::relation::tests::it_correctly_identifies_a_deletion ... ok [INFO] [stdout] test compound::nucleotide::relation::substitution::tests::it_correctly_creates_a_substitution ... ok [INFO] [stdout] test compound::nucleotide::relation::tests::it_correctly_identifies_all_dna_transitions ... ok [INFO] [stdout] test compound::nucleotide::relation::tests::it_correctly_identifies_all_rna_transitions ... ok [INFO] [stdout] test compound::nucleotide::relation::tests::it_correctly_identifies_all_rna_transversions ... ok [INFO] [stdout] test polymer::dna::nucleotide::tests::it_correctly_creates_a_nucleotide_from_a_char ... ok [INFO] [stdout] test compound::nucleotide::relation::tests::it_correctly_identifies_an_insertion ... ok [INFO] [stdout] test polymer::dna::nucleotide::tests::it_correctly_defines_analogous_nucleotides ... ok [INFO] [stdout] test compound::nucleotide::relation::tests::it_does_not_allow_an_empty_relation ... ok [INFO] [stdout] test polymer::dna::nucleotide::tests::it_correctly_defines_transcribed_nucleotides ... ok [INFO] [stdout] test polymer::dna::nucleotide::tests::it_correctly_serializes_nucleotides ... ok [INFO] [stdout] test polymer::dna::nucleotide::tests::it_correctly_deserializes_nucleotides ... ok [INFO] [stdout] test polymer::dna::tests::it_parses_a_molecule_from_a_valid_string ... ok [INFO] [stdout] test polymer::rna::nucleotide::tests::it_correctly_defines_reverse_transcribed_nucleotides ... ok [INFO] [stdout] test polymer::rna::nucleotide::tests::it_correctly_deserializes_nucleotides ... ok [INFO] [stdout] test polymer::rna::tests::it_creates_a_molecule_from_a_vec_of_nucleotides ... ok [INFO] [stdout] test polymer::rna::tests::it_fails_to_parse_a_molecule_from_an_invalid_string ... ok [INFO] [stdout] test polymer::rna::nucleotide::tests::it_correctly_serializes_nucleotides ... ok [INFO] [stdout] test compound::kind::tests::it_correctly_assigns_a_type_to_dna_nucleotides ... ok [INFO] [stdout] test polymer::dna::tests::it_fails_to_parse_a_molecule_from_an_invalid_string ... ok [INFO] [stdout] test polymer::rna::nucleotide::tests::it_correctly_creates_a_nucleotide_from_a_char ... ok [INFO] [stdout] test polymer::rna::nucleotide::tests::it_correctly_defines_analogous_nucleotides ... ok [INFO] [stdout] test polymer::rna::tests::it_parses_a_molecule_from_a_valid_string ... ok [INFO] [stdout] test polymer::dna::tests::it_creates_a_molecule_from_a_vec_of_nucleotides ... ok [INFO] [stdout] test compound::nucleotide::relation::substitution::tests::it_correctly_refuses_to_create_a_substitution_with_identical_nucleotides ... ok [INFO] [stdout] test compound::nucleotide::relation::tests::it_correctly_identifies_all_dna_transversions ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 27 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.09s [INFO] [stderr] Doc-tests omics_molecule [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 16 tests [INFO] [stdout] test src/compound/nucleotide/relation/substitution.rs - compound::nucleotide::relation::substitution::Substitution::into_parts (line 125) ... ok [INFO] [stdout] test src/polymer/dna.rs - polymer::dna::Molecule::inner (line 33) ... ok [INFO] [stdout] test src/compound/nucleotide/relation.rs - compound::nucleotide::relation::Relation::into_nucleotides (line 192) ... ok [INFO] [stdout] test src/polymer/rna.rs - polymer::rna::Molecule::inner (line 33) ... ok [INFO] [stdout] test src/polymer/rna.rs - polymer::rna::Molecule::gc_content (line 73) ... ok [INFO] [stdout] test src/polymer/dna.rs - polymer::dna::Molecule::gc_content (line 73) ... ok [INFO] [stdout] test src/compound/nucleotide/relation.rs - compound::nucleotide::relation::Relation::alternate (line 134) ... ok [INFO] [stdout] test src/polymer/dna.rs - polymer::dna::Molecule::into_inner (line 49) ... ok [INFO] [stdout] test src/polymer/rna.rs - polymer::rna::Molecule::into_inner (line 49) ... ok [INFO] [stdout] test src/compound/nucleotide/relation/substitution.rs - compound::nucleotide::relation::substitution::Substitution::reference (line 93) ... ok [INFO] [stdout] test src/compound/nucleotide/relation/substitution.rs - compound::nucleotide::relation::substitution::Substitution::kind (line 72) ... ok [INFO] [stdout] test src/compound/nucleotide/relation/substitution.rs - compound::nucleotide::relation::substitution::Substitution::alternate (line 109) ... ok [INFO] [stdout] test src/compound/nucleotide/relation/substitution.rs - compound::nucleotide::relation::substitution::Substitution::try_new (line 45) ... ok [INFO] [stdout] test src/compound/nucleotide/relation.rs - compound::nucleotide::relation::Relation::try_new (line 77) ... ok [INFO] [stdout] test src/compound/nucleotide/relation.rs - compound::nucleotide::relation::Relation::reference (line 106) ... ok [INFO] [stdout] test src/compound/nucleotide/relation.rs - compound::nucleotide::relation::Relation::as_substitution (line 164) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 16 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.86s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "f0d5716b02d0f4ca5b76cad1e17a35291c54b8577ff2fa2e2f8614c06175b32b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f0d5716b02d0f4ca5b76cad1e17a35291c54b8577ff2fa2e2f8614c06175b32b", kill_on_drop: false }` [INFO] [stdout] f0d5716b02d0f4ca5b76cad1e17a35291c54b8577ff2fa2e2f8614c06175b32b