[INFO] fetching crate msbwt2 0.3.2... [INFO] testing msbwt2-0.3.2 against beta-2025-10-28 for beta-1.92-2 [INFO] extracting crate msbwt2 0.3.2 into /workspace/builds/worker-5-tc2/source [INFO] started tweaking crates.io crate msbwt2 0.3.2 [INFO] finished tweaking crates.io crate msbwt2 0.3.2 [INFO] tweaked toml for crates.io crate msbwt2 0.3.2 written to /workspace/builds/worker-5-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate msbwt2 0.3.2 on toolchain beta-2025-10-28 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate msbwt2 0.3.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: `default_features` is deprecated in favor of `default-features` and will not work in the 2024 edition [INFO] [stderr] (in the `mimalloc` dependency) [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 15a3622ee93b9930cda0deb6a2b331b240fff04aadd69790682792297e2caa25 [INFO] running `Command { std: "docker" "start" "-a" "15a3622ee93b9930cda0deb6a2b331b240fff04aadd69790682792297e2caa25", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "15a3622ee93b9930cda0deb6a2b331b240fff04aadd69790682792297e2caa25", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "15a3622ee93b9930cda0deb6a2b331b240fff04aadd69790682792297e2caa25", kill_on_drop: false }` [INFO] [stdout] 15a3622ee93b9930cda0deb6a2b331b240fff04aadd69790682792297e2caa25 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f399040f0932fd5732ee172108be0b17b4e962dd1fe3cbb58910de57c19d0926 [INFO] running `Command { std: "docker" "start" "-a" "f399040f0932fd5732ee172108be0b17b4e962dd1fe3cbb58910de57c19d0926", kill_on_drop: false }` [INFO] [stderr] warning: `default_features` is deprecated in favor of `default-features` and will not work in the 2024 edition [INFO] [stderr] (in the `mimalloc` dependency) [INFO] [stderr] Compiling cc v1.0.78 [INFO] [stderr] Compiling libc v0.2.139 [INFO] [stderr] Compiling pkg-config v0.3.26 [INFO] [stderr] Compiling indexmap v1.9.2 [INFO] [stderr] Compiling serde v1.0.152 [INFO] [stderr] Compiling aho-corasick v0.7.20 [INFO] [stderr] Compiling miniz_oxide v0.6.2 [INFO] [stderr] Compiling os_str_bytes v6.4.1 [INFO] [stderr] Compiling regex-syntax v0.6.28 [INFO] [stderr] Compiling termcolor v1.2.0 [INFO] [stderr] Compiling serde_json v1.0.91 [INFO] [stderr] Compiling safemem v0.3.3 [INFO] [stderr] Compiling flate2 v1.0.25 [INFO] [stderr] Compiling buf_redux v0.8.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling clap_lex v0.2.4 [INFO] [stderr] Compiling textwrap v0.16.0 [INFO] [stderr] Compiling itoa v1.0.5 [INFO] [stderr] Compiling once_cell v1.17.0 [INFO] [stderr] Compiling bytecount v0.6.3 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling libmimalloc-sys v0.1.30 [INFO] [stderr] Compiling ryu v1.0.12 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling clap v3.2.23 [INFO] [stderr] Compiling regex v1.7.1 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling exitcode v1.1.2 [INFO] [stderr] Compiling arrayvec v0.7.2 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling needletail v0.4.1 [INFO] [stderr] Compiling mimalloc v0.1.34 [INFO] [stderr] Compiling env_logger v0.9.3 [INFO] [stderr] Compiling msbwt2 v0.3.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 30.42s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4` [INFO] running `Command { std: "docker" "inspect" "f399040f0932fd5732ee172108be0b17b4e962dd1fe3cbb58910de57c19d0926", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f399040f0932fd5732ee172108be0b17b4e962dd1fe3cbb58910de57c19d0926", kill_on_drop: false }` [INFO] [stdout] f399040f0932fd5732ee172108be0b17b4e962dd1fe3cbb58910de57c19d0926 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 12aaf7d17505ae3ae13f609a9b0233c6e49d9a3a1ad3a8cca1653ba7adb06f13 [INFO] running `Command { std: "docker" "start" "-a" "12aaf7d17505ae3ae13f609a9b0233c6e49d9a3a1ad3a8cca1653ba7adb06f13", kill_on_drop: false }` [INFO] [stderr] warning: `default_features` is deprecated in favor of `default-features` and will not work in the 2024 edition [INFO] [stderr] (in the `mimalloc` dependency) [INFO] [stderr] Compiling crossbeam-utils v0.8.14 [INFO] [stderr] Compiling memoffset v0.7.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.13 [INFO] [stderr] Compiling proc-macro2 v1.0.50 [INFO] [stderr] Compiling quote v1.0.23 [INFO] [stderr] Compiling unicode-ident v1.0.6 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling rayon-core v1.10.2 [INFO] [stderr] Compiling syn v1.0.107 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling num_cpus v1.15.0 [INFO] [stderr] Compiling serde_derive v1.0.152 [INFO] [stderr] Compiling plotters-backend v0.3.4 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling plotters-svg v0.3.3 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.6 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling half v1.8.2 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling serde_cbor v0.11.2 [INFO] [stderr] Compiling plotters v0.3.4 [INFO] [stderr] Compiling crossbeam-deque v0.8.2 [INFO] [stderr] Compiling criterion-plot v0.4.5 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling oorandom v11.1.3 [INFO] [stderr] Compiling fastrand v1.8.0 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling tempfile v3.3.0 [INFO] [stderr] Compiling rayon v1.6.1 [INFO] [stderr] Compiling criterion v0.3.6 [INFO] [stderr] Compiling msbwt2 v0.3.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 32.42s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4` [INFO] running `Command { std: "docker" "inspect" "12aaf7d17505ae3ae13f609a9b0233c6e49d9a3a1ad3a8cca1653ba7adb06f13", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "12aaf7d17505ae3ae13f609a9b0233c6e49d9a3a1ad3a8cca1653ba7adb06f13", kill_on_drop: false }` [INFO] [stdout] 12aaf7d17505ae3ae13f609a9b0233c6e49d9a3a1ad3a8cca1653ba7adb06f13 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 2e3530b4894f169ea859316d74ab730cb0e71d6f0bae19e4c9055a85774bc5cc [INFO] running `Command { std: "docker" "start" "-a" "2e3530b4894f169ea859316d74ab730cb0e71d6f0bae19e4c9055a85774bc5cc", kill_on_drop: false }` [INFO] [stderr] warning: `default_features` is deprecated in favor of `default-features` and will not work in the 2024 edition [INFO] [stderr] (in the `mimalloc` dependency) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4` [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/msbwt2-c20af51e15d6d0fe) [INFO] [stdout] [INFO] [stdout] running 47 tests [INFO] [stdout] test bwt_converter::tests::test_bwt_conversion ... ok [INFO] [stdout] test bwt_util::tests::merging_paper_example_works ... ok [INFO] [stdout] test bwt_converter::tests::test_newline ... ok [INFO] [stdout] test bwt_converter::tests::test_save_bwt_runs_numpy ... ok [INFO] [stdout] test bwt_util::tests::test_basic ... ok [INFO] [stdout] test bwt_util::tests::merging_samples_of_different_size_example_works ... ok [INFO] [stdout] test bwt_converter::tests::test_convert_to_vec ... ok [INFO] [stdout] test bwt_util::tests::merging_samples_of_high_similarity_works ... ok [INFO] [stdout] test bwt_converter::tests::test_compression ... ok [INFO] [stdout] test bwt_converter::tests::test_save_bwt_numpy ... ok [INFO] [stdout] test bwt_util::tests::test_cycle_breaker ... ok [INFO] [stdout] test bwt_util::tests::test_diff_len ... ok [INFO] [stdout] test dynamic_bwt::tests::test_init ... ok [INFO] [stdout] test dynamic_bwt::tests::test_create_from_fastx ... ok [INFO] [stdout] test dynamic_bwt::tests::test_multi_length ... ok [INFO] [stdout] test dynamic_bwt::tests::test_load_and_add ... ok [INFO] [stdout] test dynamic_bwt::tests::test_run_iter ... ok [INFO] [stdout] test dynamic_bwt::tests::test_multi_string_sorted ... ok [INFO] [stdout] test dynamic_bwt::tests::test_load_dynamicbwt_from_vec ... ok [INFO] [stdout] test dynamic_bwt::tests::test_constrain_range ... ok [INFO] [stdout] test dynamic_bwt::tests::test_count_kmer ... ok [INFO] [stdout] test dynamic_bwt::tests::test_multi_string_unsorted ... ok [INFO] [stdout] test dynamic_bwt::tests::test_load_dynamicbwt_from_npy ... ok [INFO] [stdout] test dynamic_bwt::tests::test_single_string ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_failure_case_001 ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_failure_case_003 ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_simple_inserts ... ok [INFO] [stdout] test rle_bwt::tests::test_constrain_range ... ok [INFO] [stdout] test rle_bwt::tests::test_count_kmer ... ok [INFO] [stdout] test rle_bwt::tests::test_fmindex ... ok [INFO] [stdout] test run_block_av_flat::tests::test_block_splits ... ok [INFO] [stdout] test run_block_av_flat::tests::test_increment_run ... ok [INFO] [stdout] test run_block_av_flat::tests::test_init ... ok [INFO] [stdout] test run_block_av_flat::tests::test_block_failure_001 ... ok [INFO] [stdout] test rle_bwt::tests::test_load_rlebwt_from_npy ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_failure_case_002 ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_init ... ok [INFO] [stdout] test run_block_av_flat::tests::test_insert ... ok [INFO] [stdout] test run_block_av_flat::tests::test_insert_splitting ... ok [INFO] [stdout] test string_util::tests::test_convert_itos ... ok [INFO] [stdout] test run_block_av_flat::tests::test_to_vec ... ok [INFO] [stdout] test string_util::tests::test_simple_index ... ok [INFO] [stdout] test string_util::tests::test_reverse_complement_i ... ok [INFO] [stdout] test string_util::tests::test_convert_stoi ... ok [INFO] [stdout] test dynamic_bwt::tests::test_sampled_bwt ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_run_iter ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_10krandom_insert ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 47 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 16.67s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/msbwt2-build.rs (/opt/rustwide/target/debug/deps/msbwt2_build-eb177f5fc3a7ea31) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/msbwt2-convert.rs (/opt/rustwide/target/debug/deps/msbwt2_convert-a484fe1100f47e68) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests msbwt2 [INFO] [stdout] [INFO] [stdout] running 38 tests [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::get_symbol_count (line 213) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::get_total_size (line 231) ... ok [INFO] [stdout] test src/bwt_util.rs - bwt_util::naive_bwt (line 148) ... ok [INFO] [stdout] test src/bwt_converter.rs - bwt_converter::save_bwt_numpy (line 89) ... FAILED [INFO] [stdout] test src/bwt_converter.rs - bwt_converter::convert_to_vec (line 19) ... ok [INFO] [stdout] test src/bwt_converter.rs - bwt_converter::save_bwt_runs_numpy (line 139) ... FAILED [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::insert_string (line 296) ... ok [INFO] [stdout] test src/bwt_util.rs - bwt_util::generate_offset_hashmap (line 64) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::load_numpy_file (line 124) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::new (line 265) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::load_vector (line 63) ... ok [INFO] [stdout] test src/bwt_util.rs - bwt_util::pairwise_bwt_merge (line 96) ... ok [INFO] [stdout] test src/lib.rs - (line 20) ... ok [INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::get_symbol_count (line 64) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::run_iter (line 419) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::iter (line 399) ... ok [INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::count_kmer (line 105) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::to_vec (line 385) ... ok [INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::load_numpy_file (line 49) ... ok [INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::load_vector (line 33) ... ok [INFO] [stdout] test src/rle_bplus_tree.rs - rle_bplus_tree::RLEBPlusTree::insert_and_count (line 196) ... ok [INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::get_total_size (line 79) ... ok [INFO] [stdout] test src/lib.rs - (line 30) ... ok [INFO] [stdout] test src/rle_bplus_tree.rs - rle_bplus_tree::RLEBPlusTree::run_iter (line 443) ... ok [INFO] [stdout] test src/rle_bplus_tree.rs - rle_bplus_tree::RLEBPlusTree::to_vec (line 401) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::create_from_fastx (line 439) ... ok [INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::get_symbol_count (line 161) ... ok [INFO] [stdout] test src/rle_bplus_tree.rs - rle_bplus_tree::RLEBPlusTree::count (line 138) ... ok [INFO] [stdout] test src/run_block_av_flat.rs - run_block_av_flat::RLEBlock::count (line 84) ... ok [INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::load_vector (line 49) ... ok [INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::get_total_size (line 179) ... ok [INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::new (line 293) ... ok [INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::load_numpy_file (line 72) ... ok [INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::with_bin_power (line 305) ... ok [INFO] [stdout] test src/run_block_av_flat.rs - run_block_av_flat::RLEBlock::insert_and_count (line 133) ... ok [INFO] [stdout] test src/string_util.rs - string_util::convert_itos (line 73) ... ok [INFO] [stdout] test src/string_util.rs - string_util::reverse_complement_i (line 38) ... ok [INFO] [stdout] test src/string_util.rs - string_util::convert_stoi (line 56) ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/bwt_converter.rs - bwt_converter::save_bwt_numpy (line 89) stdout ---- [INFO] [stdout] Test executable failed (exit status: 101). [INFO] [stdout] [INFO] [stdout] stderr: [INFO] [stdout] [INFO] [stdout] thread 'main' (184) panicked at src/bwt_converter.rs:12:41: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x608e8a15b0c2 - std::backtrace_rs::backtrace::libunwind::trace::h16acf28769fcd909 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x608e8a15b0c2 - std::backtrace_rs::backtrace::trace_unsynchronized::hb5541aa5d4f92513 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x608e8a15b0c2 - std::sys::backtrace::_print_fmt::h8ac8268cb667a306 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x608e8a15b0c2 - ::fmt::h47627beda0767f4c [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x608e8a16a49f - core::fmt::rt::Argument::fmt::h686a01ad57c1c92a [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x608e8a16a49f - core::fmt::write::h8a63064c67176fd8 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/mod.rs:1469:25 [INFO] [stdout] 6: 0x608e8a139523 - std::io::default_write_fmt::hc257f38f86d39af6 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x608e8a139523 - std::io::Write::write_fmt::h5e9b646cef91150b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x608e8a13e932 - std::sys::backtrace::BacktraceLock::print::h4634d27c0afbaebb [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x608e8a1401bc - std::panicking::default_hook::{{closure}}::h23e0299d4738b766 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x608e8a140016 - std::panicking::default_hook::hfeec6294e8751b62 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:328:9 [INFO] [stdout] 11: 0x608e8a140795 - std::panicking::panic_with_hook::hd57cd463d793ed79 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:834:13 [INFO] [stdout] 12: 0x608e8a14062a - std::panicking::panic_handler::{{closure}}::hddd6216c3fddee3b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:707:13 [INFO] [stdout] 13: 0x608e8a13ea69 - std::sys::backtrace::__rust_end_short_backtrace::h5e7a56f283378525 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 14: 0x608e8a12e09d - __rustc[256c90bb7e548b45]::rust_begin_unwind [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:698:5 [INFO] [stdout] 15: 0x608e8a16da80 - core::panicking::panic_fmt::hf19c198748ef6a95 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panicking.rs:80:14 [INFO] [stdout] 16: 0x608e8a16d0a6 - core::result::unwrap_failed::he81173b5792ad6b0 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/result.rs:1862:5 [INFO] [stdout] 17: 0x608e8a0fae6f - rust_out::main::_doctest_main_src_bwt_converter_rs_89_0::he3599c83649a8e73 [INFO] [stdout] 18: 0x608e8a0fac46 - rust_out::main::he986860d8b7bc94f [INFO] [stdout] 19: 0x608e8a0f8563 - core::ops::function::FnOnce::call_once::hd0f888ea33950d2d [INFO] [stdout] 20: 0x608e8a0f84d6 - std::sys::backtrace::__rust_begin_short_backtrace::h70a8cfcb1f800bff [INFO] [stdout] 21: 0x608e8a0f84b9 - std::rt::lang_start::{{closure}}::h03ca8d00642774ee [INFO] [stdout] 22: 0x608e8a13a990 - core::ops::function::impls:: for &F>::call_once::hdf957eac011d0136 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:287:21 [INFO] [stdout] 23: 0x608e8a13a990 - std::panicking::catch_unwind::do_call::h9ff550f7799115e1 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40 [INFO] [stdout] 24: 0x608e8a13a990 - std::panicking::catch_unwind::ha7ce46787bb12905 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19 [INFO] [stdout] 25: 0x608e8a13a990 - std::panic::catch_unwind::h625b36596def7d39 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14 [INFO] [stdout] 26: 0x608e8a13a990 - std::rt::lang_start_internal::{{closure}}::h4cbc9430de699e2c [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/rt.rs:175:24 [INFO] [stdout] 27: 0x608e8a13a990 - std::panicking::catch_unwind::do_call::h5af2f11409a22e3e [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40 [INFO] [stdout] 28: 0x608e8a13a990 - std::panicking::catch_unwind::hf64cf7b0d8070f52 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19 [INFO] [stdout] 29: 0x608e8a13a990 - std::panic::catch_unwind::h480b74763390cdcf [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14 [INFO] [stdout] 30: 0x608e8a13a990 - std::rt::lang_start_internal::h4b3d04f698aef094 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/rt.rs:171:5 [INFO] [stdout] 31: 0x608e8a0f84a1 - std::rt::lang_start::h457230af78cce7e7 [INFO] [stdout] 32: 0x608e8a0fb115 - main [INFO] [stdout] 33: 0x7677493581ca - [INFO] [stdout] 34: 0x76774935828b - __libc_start_main [INFO] [stdout] 35: 0x608e8a0f76e5 - _start [INFO] [stdout] 36: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] ---- src/bwt_converter.rs - bwt_converter::save_bwt_runs_numpy (line 139) stdout ---- [INFO] [stdout] Test executable failed (exit status: 101). [INFO] [stdout] [INFO] [stdout] stderr: [INFO] [stdout] [INFO] [stdout] thread 'main' (250) panicked at src/bwt_converter.rs:11:56: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x62340c4f2d02 - std::backtrace_rs::backtrace::libunwind::trace::h16acf28769fcd909 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x62340c4f2d02 - std::backtrace_rs::backtrace::trace_unsynchronized::hb5541aa5d4f92513 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x62340c4f2d02 - std::sys::backtrace::_print_fmt::h8ac8268cb667a306 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x62340c4f2d02 - ::fmt::h47627beda0767f4c [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x62340c50281f - core::fmt::rt::Argument::fmt::h686a01ad57c1c92a [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x62340c50281f - core::fmt::write::h8a63064c67176fd8 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/mod.rs:1469:25 [INFO] [stdout] 6: 0x62340c4d1163 - std::io::default_write_fmt::hc257f38f86d39af6 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x62340c4d1163 - std::io::Write::write_fmt::h5e9b646cef91150b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x62340c4d6572 - std::sys::backtrace::BacktraceLock::print::h4634d27c0afbaebb [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x62340c4d7dfc - std::panicking::default_hook::{{closure}}::h23e0299d4738b766 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x62340c4d7c56 - std::panicking::default_hook::hfeec6294e8751b62 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:328:9 [INFO] [stdout] 11: 0x62340c4d83d5 - std::panicking::panic_with_hook::hd57cd463d793ed79 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:834:13 [INFO] [stdout] 12: 0x62340c4d826a - std::panicking::panic_handler::{{closure}}::hddd6216c3fddee3b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:707:13 [INFO] [stdout] 13: 0x62340c4d66a9 - std::sys::backtrace::__rust_end_short_backtrace::h5e7a56f283378525 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 14: 0x62340c4c5cdd - __rustc[256c90bb7e548b45]::rust_begin_unwind [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:698:5 [INFO] [stdout] 15: 0x62340c509eb0 - core::panicking::panic_fmt::hf19c198748ef6a95 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panicking.rs:80:14 [INFO] [stdout] 16: 0x62340c5094d6 - core::result::unwrap_failed::he81173b5792ad6b0 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/result.rs:1862:5 [INFO] [stdout] 17: 0x62340c4929dc - rust_out::main::_doctest_main_src_bwt_converter_rs_139_0::he6897322a2ba07d9 [INFO] [stdout] 18: 0x62340c4927f6 - rust_out::main::he986860d8b7bc94f [INFO] [stdout] 19: 0x62340c48b943 - core::ops::function::FnOnce::call_once::hd0f888ea33950d2d [INFO] [stdout] 20: 0x62340c48b6d6 - std::sys::backtrace::__rust_begin_short_backtrace::h70a8cfcb1f800bff [INFO] [stdout] 21: 0x62340c48b6b9 - std::rt::lang_start::{{closure}}::h03ca8d00642774ee [INFO] [stdout] 22: 0x62340c4d25d0 - core::ops::function::impls:: for &F>::call_once::hdf957eac011d0136 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:287:21 [INFO] [stdout] 23: 0x62340c4d25d0 - std::panicking::catch_unwind::do_call::h9ff550f7799115e1 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40 [INFO] [stdout] 24: 0x62340c4d25d0 - std::panicking::catch_unwind::ha7ce46787bb12905 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19 [INFO] [stdout] 25: 0x62340c4d25d0 - std::panic::catch_unwind::h625b36596def7d39 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14 [INFO] [stdout] 26: 0x62340c4d25d0 - std::rt::lang_start_internal::{{closure}}::h4cbc9430de699e2c [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/rt.rs:175:24 [INFO] [stdout] 27: 0x62340c4d25d0 - std::panicking::catch_unwind::do_call::h5af2f11409a22e3e [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40 [INFO] [stdout] 28: 0x62340c4d25d0 - std::panicking::catch_unwind::hf64cf7b0d8070f52 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19 [INFO] [stdout] 29: 0x62340c4d25d0 - std::panic::catch_unwind::h480b74763390cdcf [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14 [INFO] [stdout] 30: 0x62340c4d25d0 - std::rt::lang_start_internal::h4b3d04f698aef094 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/rt.rs:171:5 [INFO] [stdout] 31: 0x62340c48b6a1 - std::rt::lang_start::h457230af78cce7e7 [INFO] [stdout] 32: 0x62340c492d05 - main [INFO] [stdout] 33: 0x7d9da77401ca - [INFO] [stdout] 34: 0x7d9da774028b - __libc_start_main [INFO] [stdout] 35: 0x62340c48ab95 - _start [INFO] [stdout] 36: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/bwt_converter.rs - bwt_converter::save_bwt_numpy (line 89) [INFO] [stdout] src/bwt_converter.rs - bwt_converter::save_bwt_runs_numpy (line 139) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 36 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 5.38s [INFO] [stdout] [INFO] [stderr] error: doctest failed, to rerun pass `--doc` [INFO] running `Command { std: "docker" "inspect" "2e3530b4894f169ea859316d74ab730cb0e71d6f0bae19e4c9055a85774bc5cc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2e3530b4894f169ea859316d74ab730cb0e71d6f0bae19e4c9055a85774bc5cc", kill_on_drop: false }` [INFO] [stdout] 2e3530b4894f169ea859316d74ab730cb0e71d6f0bae19e4c9055a85774bc5cc