[INFO] fetching crate mm2 0.25.6... [INFO] testing mm2-0.25.6 against beta-2025-10-28 for beta-1.92-2 [INFO] extracting crate mm2 0.25.6 into /workspace/builds/worker-4-tc2/source [INFO] started tweaking crates.io crate mm2 0.25.6 [INFO] finished tweaking crates.io crate mm2 0.25.6 [INFO] tweaked toml for crates.io crate mm2 0.25.6 written to /workspace/builds/worker-4-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate mm2 0.25.6 on toolchain beta-2025-10-28 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate mm2 0.25.6 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-10-28" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 49c8ca55a9ff090a9673477b693ec55510b85aa48353a44bd2e00bfa9b32525c [INFO] running `Command { std: "docker" "start" "-a" "49c8ca55a9ff090a9673477b693ec55510b85aa48353a44bd2e00bfa9b32525c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "49c8ca55a9ff090a9673477b693ec55510b85aa48353a44bd2e00bfa9b32525c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "49c8ca55a9ff090a9673477b693ec55510b85aa48353a44bd2e00bfa9b32525c", kill_on_drop: false }` [INFO] [stdout] 49c8ca55a9ff090a9673477b693ec55510b85aa48353a44bd2e00bfa9b32525c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 45dfb44c9aeb054552705263085d4bd522de8bfed2d40d7cb47222035c65b36e [INFO] running `Command { std: "docker" "start" "-a" "45dfb44c9aeb054552705263085d4bd522de8bfed2d40d7cb47222035c65b36e", kill_on_drop: false }` [INFO] [stderr] Compiling unicode-ident v1.0.15 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling bytemuck v1.21.0 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Compiling rustversion v1.0.19 [INFO] [stderr] Compiling proc-macro2 v1.0.93 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling cc v1.2.10 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling quote v1.0.38 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling syn v2.0.96 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling libloading v0.8.6 [INFO] [stderr] Compiling cmake v0.1.52 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling openssl-src v300.4.1+3.4.0 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] 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v0.3.1 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling serde v1.0.217 [INFO] [stderr] Compiling icu_provider v1.5.0 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling icu_locid_transform v1.5.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling icu_properties v1.5.1 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling nalgebra v0.32.6 [INFO] [stderr] Compiling tracing-attributes v0.1.28 [INFO] [stderr] Compiling thiserror-impl v2.0.11 [INFO] [stderr] Compiling minimap2-sys v0.1.21+minimap2.2.28 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] 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Compiling crossbeam-channel v0.5.14 [INFO] [stderr] Compiling intervaltree v0.2.7 [INFO] [stderr] Compiling sysinfo v0.34.2 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling strum v0.25.0 [INFO] [stderr] Compiling crossbeam v0.8.4 [INFO] [stderr] Compiling hp_tr_finder v0.2.3 [INFO] [stderr] Compiling tracing-subscriber v0.3.19 [INFO] [stderr] Compiling clap v4.5.27 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling bio v1.6.0 [INFO] [stderr] Compiling minimap2 v0.1.23+minimap2.2.28 [INFO] [stderr] Compiling rust-htslib v0.49.0 [INFO] [stderr] Compiling gskits v0.15.12 [INFO] [stderr] Compiling mm2 v0.25.6 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `clap::builder::Str` [INFO] [stdout] --> src/align_processor/hp_tr_metric.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use clap::builder::Str; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `ext::BamRecordExtensions` and `self` [INFO] [stdout] --> src/bam_writer.rs:9:24 [INFO] [stdout] | [INFO] [stdout] 9 | use rust_htslib::bam::{ext::BamRecordExtensions, header::HeaderRecord, record::{self, Aux}, Header}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `dump_smc_input_bam` is never used [INFO] [stdout] --> src/bin/bam-rw.rs:5:4 [INFO] [stdout] | [INFO] [stdout] 5 | fn dump_smc_input_bam(subreads_bam_path: &str, o_filepath: &str, bam_threads: Option) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 7m 27s [INFO] running `Command { std: "docker" "inspect" "45dfb44c9aeb054552705263085d4bd522de8bfed2d40d7cb47222035c65b36e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "45dfb44c9aeb054552705263085d4bd522de8bfed2d40d7cb47222035c65b36e", kill_on_drop: false }` [INFO] [stdout] 45dfb44c9aeb054552705263085d4bd522de8bfed2d40d7cb47222035c65b36e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5ac16d90ea8e8a916bd58576ee74ca9a61e287c81db87b3fa1239b260f6b8ba0 [INFO] running `Command { std: "docker" "start" "-a" "5ac16d90ea8e8a916bd58576ee74ca9a61e287c81db87b3fa1239b260f6b8ba0", kill_on_drop: false }` [INFO] [stderr] Compiling mm2 v0.25.6 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `clap::builder::Str` [INFO] [stdout] --> src/align_processor/hp_tr_metric.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use clap::builder::Str; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `ext::BamRecordExtensions` and `self` [INFO] [stdout] --> src/bam_writer.rs:9:24 [INFO] [stdout] | [INFO] [stdout] 9 | use rust_htslib::bam::{ext::BamRecordExtensions, header::HeaderRecord, record::{self, Aux}, Header}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `intervaltree` [INFO] [stdout] --> src/bin/gsmm2-hp-tr-metric.rs:518:46 [INFO] [stdout] | [INFO] [stdout] 518 | use hp_tr_finder::{all_seq_hp_tr_finder, intervaltree, UnitAndRepeats}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `dump_smc_input_bam` is never used [INFO] [stdout] --> src/bin/bam-rw.rs:5:4 [INFO] [stdout] | [INFO] [stdout] 5 | fn dump_smc_input_bam(subreads_bam_path: &str, o_filepath: &str, bam_threads: Option) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `clap::builder::Str` [INFO] [stdout] --> src/align_processor/hp_tr_metric.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use clap::builder::Str; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `ext::BamRecordExtensions` and `self` [INFO] [stdout] --> src/bam_writer.rs:9:24 [INFO] [stdout] | [INFO] [stdout] 9 | use rust_htslib::bam::{ext::BamRecordExtensions, header::HeaderRecord, record::{self, Aux}, Header}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/bin/gsmm2-hp-tr-metric.rs:567:13 [INFO] [stdout] | [INFO] [stdout] 567 | ... let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAACCGGCGA... [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/bin/gsmm2-aligned-metric.rs:499:13 [INFO] [stdout] | [INFO] [stdout] 499 | ... let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAACCGGCGA... [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/bin/gsmm2-time-err.rs:547:13 [INFO] [stdout] | [INFO] [stdout] 547 | ... let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAACCGGCGA... [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/lib.rs:687:13 [INFO] [stdout] | [INFO] [stdout] 687 | let mut records = vec![r1, r2, r3]; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `records` [INFO] [stdout] --> src/lib.rs:687:13 [INFO] [stdout] | [INFO] [stdout] 687 | let mut records = vec![r1, r2, r3]; [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_records` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aligner` [INFO] [stdout] --> src/lib.rs:708:17 [INFO] [stdout] | [INFO] [stdout] 708 | let aligner = NoMemLeakAligner(aligner); [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_aligner` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/lib.rs:1057:13 [INFO] [stdout] | [INFO] [stdout] 1057 | let seq = b"AANNNNNNNNNNNNNAAAAAAAAANNNNCCCGTTT"; [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `index_params` is assigned to, but never used [INFO] [stdout] --> src/lib.rs:1257:13 [INFO] [stdout] | [INFO] [stdout] 1257 | let mut index_params = IndexParams::default(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_index_params` instead [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `index_params` is never read [INFO] [stdout] --> src/lib.rs:1258:9 [INFO] [stdout] | [INFO] [stdout] 1258 | index_params.kmer = Some(11); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `index_params` is never read [INFO] [stdout] --> src/lib.rs:1259:9 [INFO] [stdout] | [INFO] [stdout] 1259 | index_params.wins = Some(1); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 7.06s [INFO] running `Command { std: "docker" "inspect" "5ac16d90ea8e8a916bd58576ee74ca9a61e287c81db87b3fa1239b260f6b8ba0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5ac16d90ea8e8a916bd58576ee74ca9a61e287c81db87b3fa1239b260f6b8ba0", kill_on_drop: false }` [INFO] [stdout] 5ac16d90ea8e8a916bd58576ee74ca9a61e287c81db87b3fa1239b260f6b8ba0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-10-28" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 7111ff93a16a440ceca01f1eb88cb2d0deece8247a468425bc85cf22def5fa45 [INFO] running `Command { std: "docker" "start" "-a" "7111ff93a16a440ceca01f1eb88cb2d0deece8247a468425bc85cf22def5fa45", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `clap::builder::Str` [INFO] [stderr] --> src/align_processor/hp_tr_metric.rs:5:5 [INFO] [stderr] | [INFO] [stderr] 5 | use clap::builder::Str; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused imports: `ext::BamRecordExtensions` and `self` [INFO] [stderr] --> src/bam_writer.rs:9:24 [INFO] [stderr] | [INFO] [stderr] 9 | use rust_htslib::bam::{ext::BamRecordExtensions, header::HeaderRecord, record::{self, Aux}, Header}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^ [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/lib.rs:687:13 [INFO] [stderr] | [INFO] [stderr] 687 | let mut records = vec![r1, r2, r3]; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `records` [INFO] [stderr] --> src/lib.rs:687:13 [INFO] [stderr] | [INFO] [stderr] 687 | let mut records = vec![r1, r2, r3]; [INFO] [stderr] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_records` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `aligner` [INFO] [stderr] --> src/lib.rs:708:17 [INFO] [stderr] | [INFO] [stderr] 708 | let aligner = NoMemLeakAligner(aligner); [INFO] [stderr] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_aligner` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `seq` [INFO] [stderr] --> src/lib.rs:1057:13 [INFO] [stderr] | [INFO] [stderr] 1057 | let seq = b"AANNNNNNNNNNNNNAAAAAAAAANNNNCCCGTTT"; [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stderr] [INFO] [stderr] warning: variable `index_params` is assigned to, but never used [INFO] [stderr] --> src/lib.rs:1257:13 [INFO] [stderr] | [INFO] [stderr] 1257 | let mut index_params = IndexParams::default(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: consider using `_index_params` instead [INFO] [stderr] [INFO] [stderr] warning: value assigned to `index_params` is never read [INFO] [stderr] --> src/lib.rs:1258:9 [INFO] [stderr] | [INFO] [stderr] 1258 | index_params.kmer = Some(11); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = help: maybe it is overwritten before being read? [INFO] [stderr] = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: value assigned to `index_params` is never read [INFO] [stderr] --> src/lib.rs:1259:9 [INFO] [stderr] | [INFO] [stderr] 1259 | index_params.wins = Some(1); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = help: maybe it is overwritten before being read? [INFO] [stderr] [INFO] [stderr] warning: `mm2` (lib) generated 2 warnings (run `cargo fix --lib -p mm2` to apply 2 suggestions) [INFO] [stderr] warning: `mm2` (lib test) generated 9 warnings (2 duplicates) (run `cargo fix --lib -p mm2 --tests` to apply 4 suggestions) [INFO] [stderr] warning: unused variable: `seq` [INFO] [stderr] --> src/bin/gsmm2-aligned-metric.rs:499:13 [INFO] [stderr] | [INFO] [stderr] 499 | ... let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAACCGGCGA... [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `intervaltree` [INFO] [stderr] --> src/bin/gsmm2-hp-tr-metric.rs:518:46 [INFO] [stderr] | [INFO] [stderr] 518 | use hp_tr_finder::{all_seq_hp_tr_finder, intervaltree, UnitAndRepeats}; [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `seq` [INFO] [stderr] --> src/bin/gsmm2-hp-tr-metric.rs:567:13 [INFO] [stderr] | [INFO] [stderr] 567 | ... let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAACCGGCGA... [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: function `dump_smc_input_bam` is never used [INFO] [stderr] --> src/bin/bam-rw.rs:5:4 [INFO] [stderr] | [INFO] [stderr] 5 | fn dump_smc_input_bam(subreads_bam_path: &str, o_filepath: &str, bam_threads: Option) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `seq` [INFO] [stderr] --> src/bin/gsmm2-time-err.rs:547:13 [INFO] [stderr] | [INFO] [stderr] 547 | ... let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAACCGGCGA... [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: `mm2` (bin "gsmm2-aligned-metric" test) generated 1 warning (run `cargo fix --bin "gsmm2-aligned-metric" -p mm2 --tests` to apply 1 suggestion) [INFO] [stderr] warning: `mm2` (bin "gsmm2-hp-tr-metric" test) generated 2 warnings (run `cargo fix --bin "gsmm2-hp-tr-metric" -p mm2 --tests` to apply 2 suggestions) [INFO] [stderr] warning: `mm2` (bin "bam-rw" test) generated 1 warning [INFO] [stderr] warning: `mm2` (bin "gsmm2-time-err" test) generated 1 warning (run `cargo fix --bin "gsmm2-time-err" -p mm2 --tests` to apply 1 suggestion) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.34s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/mm2-00083466f7bd45dc) [INFO] [stdout] [INFO] [stdout] running 16 tests [INFO] [stdout] test aligned_pairs::test::test_align_info ... ok [INFO] [stdout] test align_processor::align_metric::test::test_fill_align_info_from_align_pair ... ok [INFO] [stdout] test mapping_ext::test::test_mapping_ext ... ok [INFO] [stdout] test align_processor::time_err_metric::test::test_time_err_metric ... ok [INFO] [stdout] test tests::test_align_n ... ok [INFO] [stdout] test tests::test_align_short ... ok [INFO] [stdout] test tests::test_align_short2 ... ok [INFO] [stdout] test tests::test_bio_aign_n ... ok [INFO] [stdout] test tests::test_bio ... ok [INFO] [stdout] test tests::test_set_primary_alignment ... ok [INFO] [stdout] test tests::test_align ... ok [INFO] [stdout] test tests::test_align_single_query_to_target2 ... FAILED [INFO] [stdout] test tests::test_align_single_query_to_target ... FAILED [INFO] [stdout] test tests::test_align_single_query_to_target3 ... FAILED [INFO] [stdout] test tests::test_align_single_query_to_target4 ... FAILED [INFO] [stdout] test tests::build_aligner_memory_leak ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::test_align_single_query_to_target2 stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'tests::test_align_single_query_to_target2' (27) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39: [INFO] [stdout] open file error: test_data/MG1655.fa: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x634327320ab2 - std::backtrace_rs::backtrace::libunwind::trace::h16acf28769fcd909 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x634327320ab2 - std::backtrace_rs::backtrace::trace_unsynchronized::hb5541aa5d4f92513 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x634327320ab2 - std::sys::backtrace::_print_fmt::h8ac8268cb667a306 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x634327320ab2 - ::fmt::h47627beda0767f4c [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x634327331bcf - core::fmt::rt::Argument::fmt::h686a01ad57c1c92a [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x634327331bcf - core::fmt::write::h8a63064c67176fd8 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/mod.rs:1469:25 [INFO] [stdout] 6: 0x6343272ee073 - std::io::default_write_fmt::hd4797e693c0ec256 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x6343272ee073 - std::io::Write::write_fmt::h791e240ad2720c99 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x6343272fa002 - std::sys::backtrace::BacktraceLock::print::h4634d27c0afbaebb [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x6343272fec9f - std::panicking::default_hook::{{closure}}::h23e0299d4738b766 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x6343272feb31 - std::panicking::default_hook::hfeec6294e8751b62 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:325:9 [INFO] [stdout] 11: 0x63432725b61e - as core::ops::function::Fn>::call::h3f5a16438cee2b4e [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/alloc/src/boxed.rs:2019:9 [INFO] [stdout] 12: 0x63432725b61e - test::test_main_with_exit_callback::{{closure}}::h9214498cef9aafc5 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x6343272ff35f - as core::ops::function::Fn>::call::hdb18da3e68df7464 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/alloc/src/boxed.rs:2019:9 [INFO] [stdout] 14: 0x6343272ff35f - std::panicking::panic_with_hook::hd57cd463d793ed79 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:842:13 [INFO] [stdout] 15: 0x6343272ff10a - std::panicking::panic_handler::{{closure}}::hddd6216c3fddee3b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:707:13 [INFO] [stdout] 16: 0x6343272fa139 - std::sys::backtrace::__rust_end_short_backtrace::h5e7a56f283378525 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 17: 0x6343272e280d - __rustc[256c90bb7e548b45]::rust_begin_unwind [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:698:5 [INFO] [stdout] 18: 0x634327339880 - core::panicking::panic_fmt::hf19c198748ef6a95 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x634327338e06 - core::result::unwrap_failed::he81173b5792ad6b0 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/result.rs:1862:5 [INFO] [stdout] 20: 0x6343272aaa8e - core::result::Result::expect::h045ea463117d99c5 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/result.rs:1185:23 [INFO] [stdout] 21: 0x6343272aad67 - gskits::fastx_reader::fasta_reader::FastaFileReader::new::hee6e698c1134ccac [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39 [INFO] [stdout] 22: 0x634327236f90 - mm2::tests::test_align_single_query_to_target2::h73c0624bb68831db [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:715:23 [INFO] [stdout] 23: 0x634327237b37 - mm2::tests::test_align_single_query_to_target2::{{closure}}::hcae7dd4c23c2ba0b [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:713:44 [INFO] [stdout] 24: 0x63432721fcd6 - core::ops::function::FnOnce::call_once::ha160afb3b30caa6e [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x63432725b46b - core::ops::function::FnOnce::call_once::h43f43c5185cf39c2 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x63432725b46b - test::__rust_begin_short_backtrace::hc4fa634eb2764bdc [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:663:18 [INFO] [stdout] 27: 0x63432726fa88 - test::run_test_in_process::{{closure}}::h9f4b799a5211b72a [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:686:74 [INFO] [stdout] 28: 0x63432726fa88 - as core::ops::function::FnOnce<()>>::call_once::ha572bf7dc5230a8f [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 29: 0x63432726fa88 - std::panicking::catch_unwind::do_call::hfd6ff51f25dd177b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40 [INFO] [stdout] 30: 0x63432726fa88 - std::panicking::catch_unwind::h8609b446221def5f [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19 [INFO] [stdout] 31: 0x63432726fa88 - std::panic::catch_unwind::h362f73cc48531e26 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14 [INFO] [stdout] 32: 0x63432726fa88 - test::run_test_in_process::hf52fd21d696aae67 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:686:27 [INFO] [stdout] 33: 0x63432726fa88 - test::run_test::{{closure}}::h7e780b8354e6d007 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:607:43 [INFO] [stdout] 34: 0x634327248854 - test::run_test::{{closure}}::hdc2695f2276aad3e [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:637:41 [INFO] [stdout] 35: 0x634327248854 - std::sys::backtrace::__rust_begin_short_backtrace::h2555b2113ed90fc9 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:158:18 [INFO] [stdout] 36: 0x63432724c18a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h99800d480987dfb6 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/thread/mod.rs:562:17 [INFO] [stdout] 37: 0x63432724c18a - as core::ops::function::FnOnce<()>>::call_once::hbbb69b5294b2221b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 38: 0x63432724c18a - std::panicking::catch_unwind::do_call::h495689350c27df20 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40 [INFO] [stdout] 39: 0x63432724c18a - std::panicking::catch_unwind::hf22437c51d1b3740 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19 [INFO] [stdout] 40: 0x63432724c18a - std::panic::catch_unwind::habda1a57de8231f8 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14 [INFO] [stdout] 41: 0x63432724c18a - std::thread::Builder::spawn_unchecked_::{{closure}}::h5833d8dda8c7e80b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/thread/mod.rs:560:30 [INFO] [stdout] 42: 0x63432724c18a - core::ops::function::FnOnce::call_once{{vtable.shim}}::ha2910283a5058402 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 43: 0x6343272f542f - as core::ops::function::FnOnce>::call_once::he4d85cb537521972 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/alloc/src/boxed.rs:2005:9 [INFO] [stdout] 44: 0x6343272f542f - std::sys::thread::unix::Thread::new::thread_start::hbaf586a9e50a98cd [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/thread/unix.rs:126:17 [INFO] [stdout] 45: 0x7847f9362aa4 - [INFO] [stdout] 46: 0x7847f93efa64 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::test_align_single_query_to_target stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'tests::test_align_single_query_to_target' (26) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39: [INFO] [stdout] open file error: test_data/GCF_000005845.2_ASM584v2_genomic.fna: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x634327320ab2 - std::backtrace_rs::backtrace::libunwind::trace::h16acf28769fcd909 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x634327320ab2 - std::backtrace_rs::backtrace::trace_unsynchronized::hb5541aa5d4f92513 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x634327320ab2 - std::sys::backtrace::_print_fmt::h8ac8268cb667a306 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x634327320ab2 - ::fmt::h47627beda0767f4c [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x634327331bcf - core::fmt::rt::Argument::fmt::h686a01ad57c1c92a [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x634327331bcf - core::fmt::write::h8a63064c67176fd8 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/mod.rs:1469:25 [INFO] [stdout] 6: 0x6343272ee073 - std::io::default_write_fmt::hd4797e693c0ec256 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x6343272ee073 - std::io::Write::write_fmt::h791e240ad2720c99 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x6343272fa002 - std::sys::backtrace::BacktraceLock::print::h4634d27c0afbaebb [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x6343272fec9f - std::panicking::default_hook::{{closure}}::h23e0299d4738b766 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x6343272feb31 - std::panicking::default_hook::hfeec6294e8751b62 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:325:9 [INFO] [stdout] 11: 0x63432725b61e - as core::ops::function::Fn>::call::h3f5a16438cee2b4e [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/alloc/src/boxed.rs:2019:9 [INFO] [stdout] 12: 0x63432725b61e - test::test_main_with_exit_callback::{{closure}}::h9214498cef9aafc5 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x6343272ff35f - as core::ops::function::Fn>::call::hdb18da3e68df7464 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/alloc/src/boxed.rs:2019:9 [INFO] [stdout] 14: 0x6343272ff35f - std::panicking::panic_with_hook::hd57cd463d793ed79 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:842:13 [INFO] [stdout] 15: 0x6343272ff10a - std::panicking::panic_handler::{{closure}}::hddd6216c3fddee3b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:707:13 [INFO] [stdout] 16: 0x6343272fa139 - std::sys::backtrace::__rust_end_short_backtrace::h5e7a56f283378525 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 17: 0x6343272e280d - __rustc[256c90bb7e548b45]::rust_begin_unwind [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:698:5 [INFO] [stdout] 18: 0x634327339880 - core::panicking::panic_fmt::hf19c198748ef6a95 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x634327338e06 - core::result::unwrap_failed::he81173b5792ad6b0 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/result.rs:1862:5 [INFO] [stdout] 20: 0x6343272aaa8e - core::result::Result::expect::h045ea463117d99c5 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/result.rs:1185:23 [INFO] [stdout] 21: 0x6343272aad67 - gskits::fastx_reader::fasta_reader::FastaFileReader::new::hee6e698c1134ccac [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39 [INFO] [stdout] 22: 0x634327236860 - mm2::tests::test_align_single_query_to_target::he5eeebee1f8849c3 [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:639:23 [INFO] [stdout] 23: 0x634327236f07 - mm2::tests::test_align_single_query_to_target::{{closure}}::hd7b8771383e883a6 [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:637:43 [INFO] [stdout] 24: 0x63432721f856 - core::ops::function::FnOnce::call_once::h113731f336f5b0d8 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x63432725b46b - core::ops::function::FnOnce::call_once::h43f43c5185cf39c2 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x63432725b46b - test::__rust_begin_short_backtrace::hc4fa634eb2764bdc [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:663:18 [INFO] [stdout] 27: 0x63432726fa88 - test::run_test_in_process::{{closure}}::h9f4b799a5211b72a [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:686:74 [INFO] [stdout] 28: 0x63432726fa88 - as core::ops::function::FnOnce<()>>::call_once::ha572bf7dc5230a8f [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 29: 0x63432726fa88 - std::panicking::catch_unwind::do_call::hfd6ff51f25dd177b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40 [INFO] [stdout] 30: 0x63432726fa88 - std::panicking::catch_unwind::h8609b446221def5f [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19 [INFO] [stdout] 31: 0x63432726fa88 - std::panic::catch_unwind::h362f73cc48531e26 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14 [INFO] [stdout] 32: 0x63432726fa88 - test::run_test_in_process::hf52fd21d696aae67 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:686:27 [INFO] [stdout] 33: 0x63432726fa88 - test::run_test::{{closure}}::h7e780b8354e6d007 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:607:43 [INFO] [stdout] 34: 0x634327248854 - test::run_test::{{closure}}::hdc2695f2276aad3e [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:637:41 [INFO] [stdout] 35: 0x634327248854 - std::sys::backtrace::__rust_begin_short_backtrace::h2555b2113ed90fc9 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:158:18 [INFO] [stdout] 36: 0x63432724c18a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h99800d480987dfb6 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/thread/mod.rs:562:17 [INFO] [stdout] 37: 0x63432724c18a - as core::ops::function::FnOnce<()>>::call_once::hbbb69b5294b2221b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 38: 0x63432724c18a - std::panicking::catch_unwind::do_call::h495689350c27df20 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40 [INFO] [stdout] 39: 0x63432724c18a - std::panicking::catch_unwind::hf22437c51d1b3740 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19 [INFO] [stdout] 40: 0x63432724c18a - std::panic::catch_unwind::habda1a57de8231f8 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14 [INFO] [stdout] 41: 0x63432724c18a - std::thread::Builder::spawn_unchecked_::{{closure}}::h5833d8dda8c7e80b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/thread/mod.rs:560:30 [INFO] [stdout] 42: 0x63432724c18a - core::ops::function::FnOnce::call_once{{vtable.shim}}::ha2910283a5058402 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 43: 0x6343272f542f - as core::ops::function::FnOnce>::call_once::he4d85cb537521972 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/alloc/src/boxed.rs:2005:9 [INFO] [stdout] 44: 0x6343272f542f - std::sys::thread::unix::Thread::new::thread_start::hbaf586a9e50a98cd [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/thread/unix.rs:126:17 [INFO] [stdout] 45: 0x7847f9362aa4 - [INFO] [stdout] 46: 0x7847f93efa64 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::test_align_single_query_to_target3 stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'tests::test_align_single_query_to_target3' (28) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39: [INFO] [stdout] open file error: test_data/MG1655.fa: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x634327320ab2 - std::backtrace_rs::backtrace::libunwind::trace::h16acf28769fcd909 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x634327320ab2 - std::backtrace_rs::backtrace::trace_unsynchronized::hb5541aa5d4f92513 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x634327320ab2 - std::sys::backtrace::_print_fmt::h8ac8268cb667a306 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x634327320ab2 - ::fmt::h47627beda0767f4c [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x634327331bcf - core::fmt::rt::Argument::fmt::h686a01ad57c1c92a [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x634327331bcf - core::fmt::write::h8a63064c67176fd8 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/mod.rs:1469:25 [INFO] [stdout] 6: 0x6343272ee073 - std::io::default_write_fmt::hd4797e693c0ec256 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x6343272ee073 - std::io::Write::write_fmt::h791e240ad2720c99 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x6343272fa002 - std::sys::backtrace::BacktraceLock::print::h4634d27c0afbaebb [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x6343272fec9f - std::panicking::default_hook::{{closure}}::h23e0299d4738b766 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x6343272feb31 - std::panicking::default_hook::hfeec6294e8751b62 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:325:9 [INFO] [stdout] 11: 0x63432725b61e - as core::ops::function::Fn>::call::h3f5a16438cee2b4e [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/alloc/src/boxed.rs:2019:9 [INFO] [stdout] 12: 0x63432725b61e - test::test_main_with_exit_callback::{{closure}}::h9214498cef9aafc5 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x6343272ff35f - as core::ops::function::Fn>::call::hdb18da3e68df7464 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/alloc/src/boxed.rs:2019:9 [INFO] [stdout] 14: 0x6343272ff35f - std::panicking::panic_with_hook::hd57cd463d793ed79 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:842:13 [INFO] [stdout] 15: 0x6343272ff10a - std::panicking::panic_handler::{{closure}}::hddd6216c3fddee3b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:707:13 [INFO] [stdout] 16: 0x6343272fa139 - std::sys::backtrace::__rust_end_short_backtrace::h5e7a56f283378525 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 17: 0x6343272e280d - __rustc[256c90bb7e548b45]::rust_begin_unwind [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:698:5 [INFO] [stdout] 18: 0x634327339880 - core::panicking::panic_fmt::hf19c198748ef6a95 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x634327338e06 - core::result::unwrap_failed::he81173b5792ad6b0 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/result.rs:1862:5 [INFO] [stdout] 20: 0x6343272aaa8e - core::result::Result::expect::h045ea463117d99c5 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/result.rs:1185:23 [INFO] [stdout] 21: 0x6343272aad67 - gskits::fastx_reader::fasta_reader::FastaFileReader::new::hee6e698c1134ccac [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39 [INFO] [stdout] 22: 0x634327237ef0 - mm2::tests::test_align_single_query_to_target3::h032439c5ba8f93e1 [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:802:23 [INFO] [stdout] 23: 0x634327238487 - mm2::tests::test_align_single_query_to_target3::{{closure}}::hd426a5447322475f [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:800:44 [INFO] [stdout] 24: 0x63432721fe66 - core::ops::function::FnOnce::call_once::hedc3f3454a63b10b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x63432725b46b - core::ops::function::FnOnce::call_once::h43f43c5185cf39c2 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x63432725b46b - test::__rust_begin_short_backtrace::hc4fa634eb2764bdc [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:663:18 [INFO] [stdout] 27: 0x63432726fa88 - test::run_test_in_process::{{closure}}::h9f4b799a5211b72a [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:686:74 [INFO] [stdout] 28: 0x63432726fa88 - as core::ops::function::FnOnce<()>>::call_once::ha572bf7dc5230a8f [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 29: 0x63432726fa88 - std::panicking::catch_unwind::do_call::hfd6ff51f25dd177b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40 [INFO] [stdout] 30: 0x63432726fa88 - std::panicking::catch_unwind::h8609b446221def5f [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19 [INFO] [stdout] 31: 0x63432726fa88 - std::panic::catch_unwind::h362f73cc48531e26 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14 [INFO] [stdout] 32: 0x63432726fa88 - test::run_test_in_process::hf52fd21d696aae67 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:686:27 [INFO] [stdout] 33: 0x63432726fa88 - test::run_test::{{closure}}::h7e780b8354e6d007 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:607:43 [INFO] [stdout] 34: 0x634327248854 - test::run_test::{{closure}}::hdc2695f2276aad3e [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:637:41 [INFO] [stdout] 35: 0x634327248854 - std::sys::backtrace::__rust_begin_short_backtrace::h2555b2113ed90fc9 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:158:18 [INFO] [stdout] 36: 0x63432724c18a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h99800d480987dfb6 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/thread/mod.rs:562:17 [INFO] [stdout] 37: 0x63432724c18a - as core::ops::function::FnOnce<()>>::call_once::hbbb69b5294b2221b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 38: 0x63432724c18a - std::panicking::catch_unwind::do_call::h495689350c27df20 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40 [INFO] [stdout] 39: 0x63432724c18a - std::panicking::catch_unwind::hf22437c51d1b3740 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19 [INFO] [stdout] 40: 0x63432724c18a - std::panic::catch_unwind::habda1a57de8231f8 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14 [INFO] [stdout] 41: 0x63432724c18a - std::thread::Builder::spawn_unchecked_::{{closure}}::h5833d8dda8c7e80b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/thread/mod.rs:560:30 [INFO] [stdout] 42: 0x63432724c18a - core::ops::function::FnOnce::call_once{{vtable.shim}}::ha2910283a5058402 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 43: 0x6343272f542f - as core::ops::function::FnOnce>::call_once::he4d85cb537521972 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/alloc/src/boxed.rs:2005:9 [INFO] [stdout] 44: 0x6343272f542f - std::sys::thread::unix::Thread::new::thread_start::hbaf586a9e50a98cd [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/thread/unix.rs:126:17 [INFO] [stdout] 45: 0x7847f9362aa4 - [INFO] [stdout] 46: 0x7847f93efa64 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::test_align_single_query_to_target4 stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'tests::test_align_single_query_to_target4' (29) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39: [INFO] [stdout] open file error: test_data/MG1655.fa: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x634327320ab2 - std::backtrace_rs::backtrace::libunwind::trace::h16acf28769fcd909 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x634327320ab2 - std::backtrace_rs::backtrace::trace_unsynchronized::hb5541aa5d4f92513 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x634327320ab2 - std::sys::backtrace::_print_fmt::h8ac8268cb667a306 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x634327320ab2 - ::fmt::h47627beda0767f4c [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x634327331bcf - core::fmt::rt::Argument::fmt::h686a01ad57c1c92a [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x634327331bcf - core::fmt::write::h8a63064c67176fd8 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/fmt/mod.rs:1469:25 [INFO] [stdout] 6: 0x6343272ee073 - std::io::default_write_fmt::hd4797e693c0ec256 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x6343272ee073 - std::io::Write::write_fmt::h791e240ad2720c99 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x6343272fa002 - std::sys::backtrace::BacktraceLock::print::h4634d27c0afbaebb [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x6343272fec9f - std::panicking::default_hook::{{closure}}::h23e0299d4738b766 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x6343272feb31 - std::panicking::default_hook::hfeec6294e8751b62 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:325:9 [INFO] [stdout] 11: 0x63432725b61e - as core::ops::function::Fn>::call::h3f5a16438cee2b4e [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/alloc/src/boxed.rs:2019:9 [INFO] [stdout] 12: 0x63432725b61e - test::test_main_with_exit_callback::{{closure}}::h9214498cef9aafc5 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x6343272ff35f - as core::ops::function::Fn>::call::hdb18da3e68df7464 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/alloc/src/boxed.rs:2019:9 [INFO] [stdout] 14: 0x6343272ff35f - std::panicking::panic_with_hook::hd57cd463d793ed79 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:842:13 [INFO] [stdout] 15: 0x6343272ff10a - std::panicking::panic_handler::{{closure}}::hddd6216c3fddee3b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:707:13 [INFO] [stdout] 16: 0x6343272fa139 - std::sys::backtrace::__rust_end_short_backtrace::h5e7a56f283378525 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 17: 0x6343272e280d - __rustc[256c90bb7e548b45]::rust_begin_unwind [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:698:5 [INFO] [stdout] 18: 0x634327339880 - core::panicking::panic_fmt::hf19c198748ef6a95 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x634327338e06 - core::result::unwrap_failed::he81173b5792ad6b0 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/result.rs:1862:5 [INFO] [stdout] 20: 0x6343272aaa8e - core::result::Result::expect::h045ea463117d99c5 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/result.rs:1185:23 [INFO] [stdout] 21: 0x6343272aad67 - gskits::fastx_reader::fasta_reader::FastaFileReader::new::hee6e698c1134ccac [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39 [INFO] [stdout] 22: 0x634327238861 - mm2::tests::test_align_single_query_to_target4::h8f2e5e849852967a [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:924:23 [INFO] [stdout] 23: 0x634327239427 - mm2::tests::test_align_single_query_to_target4::{{closure}}::h66d5453f4f940e7a [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:922:44 [INFO] [stdout] 24: 0x63432721fb16 - core::ops::function::FnOnce::call_once::h60190d8497d935f8 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x63432725b46b - core::ops::function::FnOnce::call_once::h43f43c5185cf39c2 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x63432725b46b - test::__rust_begin_short_backtrace::hc4fa634eb2764bdc [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:663:18 [INFO] [stdout] 27: 0x63432726fa88 - test::run_test_in_process::{{closure}}::h9f4b799a5211b72a [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:686:74 [INFO] [stdout] 28: 0x63432726fa88 - as core::ops::function::FnOnce<()>>::call_once::ha572bf7dc5230a8f [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 29: 0x63432726fa88 - std::panicking::catch_unwind::do_call::hfd6ff51f25dd177b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40 [INFO] [stdout] 30: 0x63432726fa88 - std::panicking::catch_unwind::h8609b446221def5f [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19 [INFO] [stdout] 31: 0x63432726fa88 - std::panic::catch_unwind::h362f73cc48531e26 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14 [INFO] [stdout] 32: 0x63432726fa88 - test::run_test_in_process::hf52fd21d696aae67 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:686:27 [INFO] [stdout] 33: 0x63432726fa88 - test::run_test::{{closure}}::h7e780b8354e6d007 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:607:43 [INFO] [stdout] 34: 0x634327248854 - test::run_test::{{closure}}::hdc2695f2276aad3e [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/test/src/lib.rs:637:41 [INFO] [stdout] 35: 0x634327248854 - std::sys::backtrace::__rust_begin_short_backtrace::h2555b2113ed90fc9 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/backtrace.rs:158:18 [INFO] [stdout] 36: 0x63432724c18a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h99800d480987dfb6 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/thread/mod.rs:562:17 [INFO] [stdout] 37: 0x63432724c18a - as core::ops::function::FnOnce<()>>::call_once::hbbb69b5294b2221b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 38: 0x63432724c18a - std::panicking::catch_unwind::do_call::h495689350c27df20 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:590:40 [INFO] [stdout] 39: 0x63432724c18a - std::panicking::catch_unwind::hf22437c51d1b3740 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panicking.rs:553:19 [INFO] [stdout] 40: 0x63432724c18a - std::panic::catch_unwind::habda1a57de8231f8 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/panic.rs:359:14 [INFO] [stdout] 41: 0x63432724c18a - std::thread::Builder::spawn_unchecked_::{{closure}}::h5833d8dda8c7e80b [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/thread/mod.rs:560:30 [INFO] [stdout] 42: 0x63432724c18a - core::ops::function::FnOnce::call_once{{vtable.shim}}::ha2910283a5058402 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 43: 0x6343272f542f - as core::ops::function::FnOnce>::call_once::he4d85cb537521972 [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/alloc/src/boxed.rs:2005:9 [INFO] [stdout] 44: 0x6343272f542f - std::sys::thread::unix::Thread::new::thread_start::hbaf586a9e50a98cd [INFO] [stdout] at /rustc/3b4dd9bf1410f8da6329baa36ce5e37673cbbd1f/library/std/src/sys/thread/unix.rs:126:17 [INFO] [stdout] 45: 0x7847f9362aa4 - [INFO] [stdout] 46: 0x7847f93efa64 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::test_align_single_query_to_target [INFO] [stdout] tests::test_align_single_query_to_target2 [INFO] [stdout] tests::test_align_single_query_to_target3 [INFO] [stdout] tests::test_align_single_query_to_target4 [INFO] [stdout] [INFO] [stdout] test result: FAILED. 12 passed; 4 failed; 0 ignored; 0 measured; 0 filtered out; finished in 14.83s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--lib` [INFO] running `Command { std: "docker" "inspect" "7111ff93a16a440ceca01f1eb88cb2d0deece8247a468425bc85cf22def5fa45", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7111ff93a16a440ceca01f1eb88cb2d0deece8247a468425bc85cf22def5fa45", kill_on_drop: false }` [INFO] [stdout] 7111ff93a16a440ceca01f1eb88cb2d0deece8247a468425bc85cf22def5fa45