[INFO] fetching crate thaf 0.0.3...
[INFO] testing thaf-0.0.3 against 1.91.0 for beta-1.92-2
[INFO] extracting crate thaf 0.0.3 into /workspace/builds/worker-7-tc1/source
[INFO] started tweaking crates.io crate thaf 0.0.3
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate thaf 0.0.3
[INFO] tweaked toml for crates.io crate thaf 0.0.3 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate thaf 0.0.3 on toolchain 1.91.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate thaf 0.0.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded bytemuck v1.23.1
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded ordered-float v5.0.0
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded simba v0.9.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded rand_distr v0.4.3
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded ndarray v0.16.1
[INFO] [stderr]   Downloaded nalgebra v0.33.2
[INFO] [stderr]   Downloaded petgraph v0.8.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2f797270d869e8d62648ebdd620f46a3f256e0a7e58fdd1d5080ea42cc77ac5a
[INFO] running `Command { std: "docker" "start" "-a" "2f797270d869e8d62648ebdd620f46a3f256e0a7e58fdd1d5080ea42cc77ac5a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2f797270d869e8d62648ebdd620f46a3f256e0a7e58fdd1d5080ea42cc77ac5a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2f797270d869e8d62648ebdd620f46a3f256e0a7e58fdd1d5080ea42cc77ac5a", kill_on_drop: false }`
[INFO] [stdout] 2f797270d869e8d62648ebdd620f46a3f256e0a7e58fdd1d5080ea42cc77ac5a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5bda2ae7b18a799a60680c99b0b27c47e4cc5066ca81b243f0f6ef222a3f8e24
[INFO] running `Command { std: "docker" "start" "-a" "5bda2ae7b18a799a60680c99b0b27c47e4cc5066ca81b243f0f6ef222a3f8e24", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling libc v0.2.174
[INFO] [stderr]    Compiling zerocopy v0.8.26
[INFO] [stderr]    Compiling cfg-if v1.0.1
[INFO] [stderr]    Compiling memchr v2.7.5
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling bytemuck v1.23.1
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]    Compiling typenum v1.18.0
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustversion v1.0.21
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling foldhash v0.1.5
[INFO] [stderr]    Compiling allocator-api2 v0.2.21
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling anstyle-parse v0.2.7
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling anstyle-query v1.1.3
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling hashbrown v0.15.4
[INFO] [stderr]    Compiling anstyle v1.0.11
[INFO] [stderr]    Compiling thiserror v2.0.12
[INFO] [stderr]    Compiling colorchoice v1.0.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling anstream v0.6.19
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling clap_lex v0.7.5
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling indexmap v2.10.0
[INFO] [stderr]    Compiling clap_builder v4.5.41
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling petgraph v0.8.2
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling simba v0.9.0
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling clap_derive v4.5.41
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling clap v4.5.41
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling thaf v0.0.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 48.79s
[INFO] running `Command { std: "docker" "inspect" "5bda2ae7b18a799a60680c99b0b27c47e4cc5066ca81b243f0f6ef222a3f8e24", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5bda2ae7b18a799a60680c99b0b27c47e4cc5066ca81b243f0f6ef222a3f8e24", kill_on_drop: false }`
[INFO] [stdout] 5bda2ae7b18a799a60680c99b0b27c47e4cc5066ca81b243f0f6ef222a3f8e24
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 02e04ec76d49c147b2a3458e56d2c8d5baa101ff6408aae09203b8c25904b35a
[INFO] running `Command { std: "docker" "start" "-a" "02e04ec76d49c147b2a3458e56d2c8d5baa101ff6408aae09203b8c25904b35a", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustix v1.0.7
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling bitflags v2.9.1
[INFO] [stderr]    Compiling linux-raw-sys v0.9.4
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling tempfile v3.20.0
[INFO] [stderr]    Compiling thaf v0.0.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 5.66s
[INFO] running `Command { std: "docker" "inspect" "02e04ec76d49c147b2a3458e56d2c8d5baa101ff6408aae09203b8c25904b35a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "02e04ec76d49c147b2a3458e56d2c8d5baa101ff6408aae09203b8c25904b35a", kill_on_drop: false }`
[INFO] [stdout] 02e04ec76d49c147b2a3458e56d2c8d5baa101ff6408aae09203b8c25904b35a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 66c35d2c5c00d194f5c15abfe07885722872ce3be0a4e867755d1e5f60754654
[INFO] running `Command { std: "docker" "start" "-a" "66c35d2c5c00d194f5c15abfe07885722872ce3be0a4e867755d1e5f60754654", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.25s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/thaf-1faa88cae2658fbd)
[INFO] [stdout] running 8 tests
[INFO] [stdout] test transcript_builder::tests::test_build_transcripts_from_regions ... ok
[INFO] [stdout] test gff3::tests::test_parse_attributes_basic ... ok
[INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_minus ... ok
[INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_plus ... ok
[INFO] [stdout] test gff3::tests::test_parse_gff3_to_regions_simple ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_sort_minus ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_sort_plus ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_overlap_panic - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/thaf-0a368c2212371c64)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test transcript_builder::tests::test_build_transcripts_from_regions ... ok
[INFO] [stdout] test gff3::tests::test_parse_gff3_to_regions_simple ... ok
[INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_minus ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_sort_plus ... ok
[INFO] [stdout] test gff3::tests::test_parse_attributes_basic ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_sort_minus ... ok
[INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_plus ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_overlap_panic - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/minitest.rs (/opt/rustwide/target/debug/deps/minitest-b335e386b60ef498)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test minimal_transcript_extraction ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests thaf
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "66c35d2c5c00d194f5c15abfe07885722872ce3be0a4e867755d1e5f60754654", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "66c35d2c5c00d194f5c15abfe07885722872ce3be0a4e867755d1e5f60754654", kill_on_drop: false }`
[INFO] [stdout] 66c35d2c5c00d194f5c15abfe07885722872ce3be0a4e867755d1e5f60754654