[INFO] fetching crate pombase-gocam 0.100.0... [INFO] testing pombase-gocam-0.100.0 against 1.91.0 for beta-1.92-2 [INFO] extracting crate pombase-gocam 0.100.0 into /workspace/builds/worker-2-tc1/source [INFO] started tweaking crates.io crate pombase-gocam 0.100.0 [INFO] finished tweaking crates.io crate pombase-gocam 0.100.0 [INFO] tweaked toml for crates.io crate pombase-gocam 0.100.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate pombase-gocam 0.100.0 on toolchain 1.91.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate pombase-gocam 0.100.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7223b991c9b37879e8f12ea8216a913a2a59f0ce3734bc197d4625f03682a2e3 [INFO] running `Command { std: "docker" "start" "-a" "7223b991c9b37879e8f12ea8216a913a2a59f0ce3734bc197d4625f03682a2e3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7223b991c9b37879e8f12ea8216a913a2a59f0ce3734bc197d4625f03682a2e3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7223b991c9b37879e8f12ea8216a913a2a59f0ce3734bc197d4625f03682a2e3", kill_on_drop: false }` [INFO] [stdout] 7223b991c9b37879e8f12ea8216a913a2a59f0ce3734bc197d4625f03682a2e3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a30c0253a25c514b367b56ef108fefbe313a468070b277a9bf701a3e2fb97e3a [INFO] running `Command { std: "docker" "start" "-a" "a30c0253a25c514b367b56ef108fefbe313a468070b277a9bf701a3e2fb97e3a", kill_on_drop: false }` [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling regex-syntax v0.8.6 [INFO] [stderr] Compiling phf_shared v0.11.3 [INFO] [stderr] Compiling hashbrown v0.15.4 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling phf_generator v0.11.3 [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling regex-automata v0.4.10 [INFO] [stderr] Compiling serde_yaml v0.9.34+deprecated [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling phf_macros v0.11.3 [INFO] [stderr] Compiling phf v0.11.3 [INFO] [stderr] Compiling regex v1.11.2 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling pombase-gocam v0.100.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 23.80s [INFO] running `Command { std: "docker" "inspect" "a30c0253a25c514b367b56ef108fefbe313a468070b277a9bf701a3e2fb97e3a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a30c0253a25c514b367b56ef108fefbe313a468070b277a9bf701a3e2fb97e3a", kill_on_drop: false }` [INFO] [stdout] a30c0253a25c514b367b56ef108fefbe313a468070b277a9bf701a3e2fb97e3a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b36758d0872ffb1e7277890af332a4c7bc1a5f7ba4218502f391cd4c19e5ec18 [INFO] running `Command { std: "docker" "start" "-a" "b36758d0872ffb1e7277890af332a4c7bc1a5f7ba4218502f391cd4c19e5ec18", kill_on_drop: false }` [INFO] [stderr] Compiling pombase-gocam v0.100.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 6.58s [INFO] running `Command { std: "docker" "inspect" "b36758d0872ffb1e7277890af332a4c7bc1a5f7ba4218502f391cd4c19e5ec18", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b36758d0872ffb1e7277890af332a4c7bc1a5f7ba4218502f391cd4c19e5ec18", kill_on_drop: false }` [INFO] [stdout] b36758d0872ffb1e7277890af332a4c7bc1a5f7ba4218502f391cd4c19e5ec18 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 0e8563c952643fea99509dfc78c798cc0e968473d6c6005c74254cad64d903f7 [INFO] running `Command { std: "docker" "start" "-a" "0e8563c952643fea99509dfc78c798cc0e968473d6c6005c74254cad64d903f7", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.08s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/pombase_gocam-8fdfb73593395f12) [INFO] [stdout] [INFO] [stdout] running 21 tests [INFO] [stdout] test graph::tests::parse_raw_test ... ok [INFO] [stdout] test raw::tests::parse_raw_test ... ok [INFO] [stdout] test tests::model_activity_enabled_by_test ... ok [INFO] [stdout] test tests::test_genes_enabling_activities ... ok [INFO] [stdout] test tests::retain_enabling_genes_test ... ok [INFO] [stdout] test gocam_py::tests::parse_test ... ok [INFO] [stdout] test tests::retain_largest_subgraph_test ... ok [INFO] [stdout] test tests::test_node_rel_direction ... ok [INFO] [stdout] test tests::test_modified_genes_in_model ... ok [INFO] [stdout] test tests::test_genes_in_model ... ok [INFO] [stdout] test tests::remove_chemicals_inputs_outputs_only_test ... ok [INFO] [stdout] test tests::parse_test ... ok [INFO] [stdout] test raw::tests::parse_raw_test_with_complement ... ok [INFO] [stdout] test tests::remove_chemicals_test ... ok [INFO] [stdout] test tests::location_of_chemical ... ok [INFO] [stdout] test tests::overlap_test ... ok [INFO] [stdout] test tests::find_overlaps_test ... ok [INFO] [stdout] test tests::merge_test ... ok [INFO] [stdout] test tests::merge_test_three_models ... ok [INFO] [stdout] test tests::merge_test_mss51_remove_chemicals ... ok [INFO] [stdout] test tests::merge_test_mss51 ... ok [INFO] [stderr] Doc-tests pombase_gocam [INFO] [stdout] [INFO] [stdout] test result: ok. 21 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.38s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test src/raw.rs - raw::GoCamRawModel (line 289) ... ok [INFO] [stdout] test src/raw.rs - raw (line 8) ... ok [INFO] [stdout] test src/lib.rs - (line 17) ... ok [INFO] [stdout] test src/lib.rs - GoCamModel::new (line 221) ... ok [INFO] [stdout] test src/raw.rs - raw::gocam_parse_raw (line 445) ... ok [INFO] [stdout] test src/lib.rs - parse_gocam_model (line 2253) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.09s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "0e8563c952643fea99509dfc78c798cc0e968473d6c6005c74254cad64d903f7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0e8563c952643fea99509dfc78c798cc0e968473d6c6005c74254cad64d903f7", kill_on_drop: false }` [INFO] [stdout] 0e8563c952643fea99509dfc78c798cc0e968473d6c6005c74254cad64d903f7