[INFO] fetching crate ncbi-vdb-sys 0.1.6... [INFO] testing ncbi-vdb-sys-0.1.6 against 1.91.0 for beta-1.92-2 [INFO] extracting crate ncbi-vdb-sys 0.1.6 into /workspace/builds/worker-4-tc1/source [INFO] removed /workspace/builds/worker-4-tc1/source/.cargo/config.toml [INFO] started tweaking crates.io crate ncbi-vdb-sys 0.1.6 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate ncbi-vdb-sys 0.1.6 [INFO] tweaked toml for crates.io crate ncbi-vdb-sys 0.1.6 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate ncbi-vdb-sys 0.1.6 on toolchain 1.91.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate ncbi-vdb-sys 0.1.6 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded clap v4.5.37 [INFO] [stderr] Downloaded clap_builder v4.5.37 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 17f5e89ec785758ef52202c75d1186d9029ebc9dd60a0fe7631c3d7b0b9b6576 [INFO] running `Command { std: "docker" "start" "-a" "17f5e89ec785758ef52202c75d1186d9029ebc9dd60a0fe7631c3d7b0b9b6576", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "17f5e89ec785758ef52202c75d1186d9029ebc9dd60a0fe7631c3d7b0b9b6576", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "17f5e89ec785758ef52202c75d1186d9029ebc9dd60a0fe7631c3d7b0b9b6576", kill_on_drop: false }` [INFO] [stdout] 17f5e89ec785758ef52202c75d1186d9029ebc9dd60a0fe7631c3d7b0b9b6576 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e3bebf3cd5d8be1d330101a6805f15fb386594264629658a1894c46b7de69b78 [INFO] running `Command { std: "docker" "start" "-a" "e3bebf3cd5d8be1d330101a6805f15fb386594264629658a1894c46b7de69b78", kill_on_drop: false }` [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling libc v0.2.172 [INFO] [stderr] Compiling syn v2.0.101 [INFO] [stderr] Compiling walkdir v2.5.0 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/ncbi-vdb-sys-639cc76d2c74c84e/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=build.rs [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/libs [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/interfaces [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/setup/konfigure.perl [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/Makefile.env [INFO] [stderr] Configuring NCBI-VDB package [INFO] [stderr] checking system type... Linux [INFO] [stderr] checking OS distributor... [INFO] [stderr] checking machine architecture... x86_64 [INFO] [stderr] checking for supported architecture... x86_64 (64 bits) is supported [INFO] [stderr] checking for supported OS... Linux (linux) is supported [INFO] [stderr] checking for supported tool chain... gcc tool chain is supported [INFO] [stderr] checking for gcc... gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 [INFO] [stderr] checking for g++... yes [INFO] [stderr] checking for Python 3... /usr/bin/python3 [INFO] [stderr] checking whether g++ accepts -static-libstdc++... no [INFO] [stderr] checking for cmake... yes [INFO] [stderr] checking for fuse library... no [INFO] [stderr] checking for hdf5 library... no [INFO] [stderr] checking for magic library... no [INFO] [stderr] checking for xml2 library... no [INFO] [stderr] [INFO] [stderr] configure: creating 'build/ld.linux.exe_cmd.sh' [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] cannot open build/ld.linux.exe_cmd.sh to write at konfigure.perl line 885. [INFO] [stderr] [INFO] [stderr] thread 'main' (84) panicked at build.rs:37:13: [INFO] [stderr] Configure failed [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5b7ec894b4d2 - std::backtrace_rs::backtrace::libunwind::trace::h62f3c6bea0fedab3 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x5b7ec894b4d2 - std::backtrace_rs::backtrace::trace_unsynchronized::hc41aaca6c0af0bde [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x5b7ec894b4d2 - std::sys::backtrace::_print_fmt::h33ac2b97007106cc [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x5b7ec894b4d2 - ::fmt::h4e0a3aeea0f9c085 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x5b7ec895aa3f - core::fmt::rt::Argument::fmt::h1edd6a3e00b22f10 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x5b7ec895aa3f - core::fmt::write::hecf68a131630c74d [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x5b7ec8921021 - std::io::default_write_fmt::haf8355dc2afbec95 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x5b7ec8921021 - std::io::Write::write_fmt::h93c9a261259c931a [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x5b7ec892aa12 - std::sys::backtrace::BacktraceLock::print::h75160192768e5621 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x5b7ec892c78c - std::panicking::default_hook::{{closure}}::h14d82797cfb1ddcb [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x5b7ec892c5e6 - std::panicking::default_hook::h63f9bf8161c5d325 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x5b7ec892ce15 - std::panicking::panic_with_hook::h3173740e06bd0752 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x5b7ec892cc76 - std::panicking::panic_handler::{{closure}}::hbac492c61eb56a87 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:700:13 [INFO] [stderr] 13: 0x5b7ec892ab49 - std::sys::backtrace::__rust_end_short_backtrace::haa3eac3df9535320 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x5b7ec891581d - __rustc[de0091b922c53d7e]::rust_begin_unwind [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x5b7ec895e070 - core::panicking::panic_fmt::h5138da2ef87be35b [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x5b7ec88f890b - build_script_build::main::h483b58f731f4604d [INFO] [stderr] 17: 0x5b7ec88f9183 - core::ops::function::FnOnce::call_once::hb631158632d75b5f [INFO] [stderr] 18: 0x5b7ec88f8dd6 - std::sys::backtrace::__rust_begin_short_backtrace::h6f04325a6eba0a95 [INFO] [stderr] 19: 0x5b7ec88f8cc9 - std::rt::lang_start::{{closure}}::h0cc755f02cfbdef2 [INFO] [stderr] 20: 0x5b7ec8922900 - core::ops::function::impls:: for &F>::call_once::hc7ed5622678f5124 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 21: 0x5b7ec8922900 - std::panicking::catch_unwind::do_call::hc59414a11cf2a25a [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stderr] 22: 0x5b7ec8922900 - std::panicking::catch_unwind::hff67b45e0819a036 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stderr] 23: 0x5b7ec8922900 - std::panic::catch_unwind::hec0fb0db85f7fd60 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stderr] 24: 0x5b7ec8922900 - std::rt::lang_start_internal::{{closure}}::h74bea026352620a3 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/rt.rs:175:24 [INFO] [stderr] 25: 0x5b7ec8922900 - std::panicking::catch_unwind::do_call::h931ef1bf7bdfcae2 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stderr] 26: 0x5b7ec8922900 - std::panicking::catch_unwind::h3816830c825cbe04 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stderr] 27: 0x5b7ec8922900 - std::panic::catch_unwind::h408406c8f02ebb9d [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stderr] 28: 0x5b7ec8922900 - std::rt::lang_start_internal::hce2b8b328837374b [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/rt.rs:171:5 [INFO] [stderr] 29: 0x5b7ec88f8cb1 - std::rt::lang_start::h34255bf3ed424c8e [INFO] [stderr] 30: 0x5b7ec88fc0a5 - main [INFO] [stderr] 31: 0x7b6028db51ca - [INFO] [stderr] 32: 0x7b6028db528b - __libc_start_main [INFO] [stderr] 33: 0x5b7ec88f7ef5 - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "e3bebf3cd5d8be1d330101a6805f15fb386594264629658a1894c46b7de69b78", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e3bebf3cd5d8be1d330101a6805f15fb386594264629658a1894c46b7de69b78", kill_on_drop: false }` [INFO] [stdout] e3bebf3cd5d8be1d330101a6805f15fb386594264629658a1894c46b7de69b78