[INFO] fetching crate msbwt2 0.3.2... [INFO] testing msbwt2-0.3.2 against 1.91.0 for beta-1.92-2 [INFO] extracting crate msbwt2 0.3.2 into /workspace/builds/worker-5-tc1/source [INFO] started tweaking crates.io crate msbwt2 0.3.2 [INFO] finished tweaking crates.io crate msbwt2 0.3.2 [INFO] tweaked toml for crates.io crate msbwt2 0.3.2 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate msbwt2 0.3.2 on toolchain 1.91.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate msbwt2 0.3.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: `default_features` is deprecated in favor of `default-features` and will not work in the 2024 edition [INFO] [stderr] (in the `mimalloc` dependency) [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded mimalloc v0.1.34 [INFO] [stderr] Downloaded xz2 v0.1.7 [INFO] [stderr] Downloaded exitcode v1.1.2 [INFO] [stderr] Downloaded plotters-svg v0.3.3 [INFO] [stderr] Downloaded serde v1.0.152 [INFO] [stderr] Downloaded os_str_bytes v6.4.1 [INFO] [stderr] Downloaded textwrap v0.16.0 [INFO] [stderr] Downloaded plotters-backend v0.3.4 [INFO] [stderr] Downloaded serde_derive v1.0.152 [INFO] [stderr] Downloaded needletail v0.4.1 [INFO] [stderr] Downloaded serde_json v1.0.91 [INFO] [stderr] Downloaded cc v1.0.78 [INFO] [stderr] Downloaded proc-macro2 v1.0.50 [INFO] [stderr] Downloaded regex v1.7.1 [INFO] [stderr] Downloaded quote v1.0.23 [INFO] [stderr] Downloaded rayon-core v1.10.2 [INFO] [stderr] Downloaded plotters v0.3.4 [INFO] [stderr] Downloaded libc v0.2.139 [INFO] [stderr] Downloaded lzma-sys v0.1.20 [INFO] [stderr] Downloaded libmimalloc-sys v0.1.30 [INFO] [stderr] Downloaded clap v3.2.23 [INFO] [stderr] Downloaded rayon v1.6.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ddfdd0c36f384336d15977c29d8c803b0e3565ce62a398be3b8c5dc7e164b1f9 [INFO] running `Command { std: "docker" "start" "-a" "ddfdd0c36f384336d15977c29d8c803b0e3565ce62a398be3b8c5dc7e164b1f9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ddfdd0c36f384336d15977c29d8c803b0e3565ce62a398be3b8c5dc7e164b1f9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ddfdd0c36f384336d15977c29d8c803b0e3565ce62a398be3b8c5dc7e164b1f9", kill_on_drop: false }` [INFO] [stdout] ddfdd0c36f384336d15977c29d8c803b0e3565ce62a398be3b8c5dc7e164b1f9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 95a5821fdc42faca7e40cd550b6bc8065cd363129d755bb8917b911c04fb29ad [INFO] running `Command { std: "docker" "start" "-a" "95a5821fdc42faca7e40cd550b6bc8065cd363129d755bb8917b911c04fb29ad", kill_on_drop: false }` [INFO] [stderr] warning: `default_features` is deprecated in favor of `default-features` and will not work in the 2024 edition [INFO] [stderr] (in the `mimalloc` dependency) [INFO] [stderr] Compiling cc v1.0.78 [INFO] [stderr] Compiling libc v0.2.139 [INFO] [stderr] Compiling pkg-config v0.3.26 [INFO] [stderr] Compiling indexmap v1.9.2 [INFO] [stderr] Compiling serde v1.0.152 [INFO] [stderr] Compiling aho-corasick v0.7.20 [INFO] [stderr] Compiling miniz_oxide v0.6.2 [INFO] [stderr] Compiling os_str_bytes v6.4.1 [INFO] [stderr] Compiling serde_json v1.0.91 [INFO] [stderr] Compiling regex-syntax v0.6.28 [INFO] [stderr] Compiling safemem v0.3.3 [INFO] [stderr] Compiling termcolor v1.2.0 [INFO] [stderr] Compiling buf_redux v0.8.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling flate2 v1.0.25 [INFO] [stderr] Compiling clap_lex v0.2.4 [INFO] [stderr] Compiling bytecount v0.6.3 [INFO] [stderr] Compiling once_cell v1.17.0 [INFO] [stderr] Compiling itoa v1.0.5 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling libmimalloc-sys v0.1.30 [INFO] [stderr] Compiling textwrap v0.16.0 [INFO] [stderr] Compiling regex v1.7.1 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling ryu v1.0.12 [INFO] [stderr] Compiling clap v3.2.23 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling arrayvec v0.7.2 [INFO] [stderr] Compiling exitcode v1.1.2 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling needletail v0.4.1 [INFO] [stderr] Compiling mimalloc v0.1.34 [INFO] [stderr] Compiling env_logger v0.9.3 [INFO] [stderr] Compiling msbwt2 v0.3.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 30.46s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4` [INFO] running `Command { std: "docker" "inspect" "95a5821fdc42faca7e40cd550b6bc8065cd363129d755bb8917b911c04fb29ad", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "95a5821fdc42faca7e40cd550b6bc8065cd363129d755bb8917b911c04fb29ad", kill_on_drop: false }` [INFO] [stdout] 95a5821fdc42faca7e40cd550b6bc8065cd363129d755bb8917b911c04fb29ad [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 425fd7456cc38420b2b8797f1f69d24f2de5493442caf65c5103ead38efc6371 [INFO] running `Command { std: "docker" "start" "-a" "425fd7456cc38420b2b8797f1f69d24f2de5493442caf65c5103ead38efc6371", kill_on_drop: false }` [INFO] [stderr] warning: `default_features` is deprecated in favor of `default-features` and will not work in the 2024 edition [INFO] [stderr] (in the `mimalloc` dependency) [INFO] [stderr] Compiling crossbeam-utils v0.8.14 [INFO] [stderr] Compiling memoffset v0.7.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.13 [INFO] [stderr] Compiling proc-macro2 v1.0.50 [INFO] [stderr] Compiling unicode-ident v1.0.6 [INFO] [stderr] Compiling quote v1.0.23 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling syn v1.0.107 [INFO] [stderr] Compiling rayon-core v1.10.2 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling num_cpus v1.15.0 [INFO] [stderr] Compiling plotters-backend v0.3.4 [INFO] [stderr] Compiling serde_derive v1.0.152 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling crossbeam-channel v0.5.6 [INFO] [stderr] Compiling plotters-svg v0.3.3 [INFO] [stderr] Compiling half v1.8.2 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling crossbeam-deque v0.8.2 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling serde_cbor v0.11.2 [INFO] [stderr] Compiling plotters v0.3.4 [INFO] [stderr] Compiling criterion-plot v0.4.5 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling oorandom v11.1.3 [INFO] [stderr] Compiling fastrand v1.8.0 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling rayon v1.6.1 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling tempfile v3.3.0 [INFO] [stderr] Compiling criterion v0.3.6 [INFO] [stderr] Compiling msbwt2 v0.3.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 40.29s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4` [INFO] running `Command { std: "docker" "inspect" "425fd7456cc38420b2b8797f1f69d24f2de5493442caf65c5103ead38efc6371", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "425fd7456cc38420b2b8797f1f69d24f2de5493442caf65c5103ead38efc6371", kill_on_drop: false }` [INFO] [stdout] 425fd7456cc38420b2b8797f1f69d24f2de5493442caf65c5103ead38efc6371 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 1f61650d2da342a79b53a6a8464e3ea706bf0ec7075fe7285ba638bc151e3cb2 [INFO] running `Command { std: "docker" "start" "-a" "1f61650d2da342a79b53a6a8464e3ea706bf0ec7075fe7285ba638bc151e3cb2", kill_on_drop: false }` [INFO] [stderr] warning: `default_features` is deprecated in favor of `default-features` and will not work in the 2024 edition [INFO] [stderr] (in the `mimalloc` dependency) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.21s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4` [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/msbwt2-4225f65747f4576b) [INFO] [stdout] [INFO] [stdout] running 47 tests [INFO] [stdout] test bwt_converter::tests::test_convert_to_vec ... ok [INFO] [stdout] test bwt_converter::tests::test_newline ... ok [INFO] [stdout] test bwt_util::tests::merging_paper_example_works ... ok [INFO] [stdout] test bwt_util::tests::merging_samples_of_different_size_example_works ... ok [INFO] [stdout] test bwt_converter::tests::test_bwt_conversion ... ok [INFO] [stdout] test bwt_util::tests::test_diff_len ... ok [INFO] [stdout] test dynamic_bwt::tests::test_constrain_range ... ok [INFO] [stdout] test dynamic_bwt::tests::test_count_kmer ... ok [INFO] [stdout] test dynamic_bwt::tests::test_init ... ok [INFO] [stdout] test bwt_util::tests::merging_samples_of_high_similarity_works ... ok [INFO] [stdout] test bwt_util::tests::test_basic ... ok [INFO] [stdout] test dynamic_bwt::tests::test_create_from_fastx ... ok [INFO] [stdout] test dynamic_bwt::tests::test_load_dynamicbwt_from_vec ... ok [INFO] [stdout] test dynamic_bwt::tests::test_multi_length ... ok [INFO] [stdout] test dynamic_bwt::tests::test_load_and_add ... ok [INFO] [stdout] test dynamic_bwt::tests::test_multi_string_sorted ... ok [INFO] [stdout] test dynamic_bwt::tests::test_multi_string_unsorted ... ok [INFO] [stdout] test dynamic_bwt::tests::test_run_iter ... ok [INFO] [stdout] test bwt_converter::tests::test_save_bwt_runs_numpy ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_failure_case_001 ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_failure_case_002 ... ok [INFO] [stdout] test bwt_converter::tests::test_save_bwt_numpy ... ok [INFO] [stdout] test bwt_converter::tests::test_compression ... ok [INFO] [stdout] test dynamic_bwt::tests::test_single_string ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_init ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_failure_case_003 ... ok [INFO] [stdout] test rle_bwt::tests::test_count_kmer ... ok [INFO] [stdout] test rle_bwt::tests::test_constrain_range ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_simple_inserts ... ok [INFO] [stdout] test run_block_av_flat::tests::test_block_failure_001 ... ok [INFO] [stdout] test rle_bwt::tests::test_load_rlebwt_from_npy ... ok [INFO] [stdout] test bwt_util::tests::test_cycle_breaker ... ok [INFO] [stdout] test run_block_av_flat::tests::test_init ... ok [INFO] [stdout] test rle_bwt::tests::test_fmindex ... ok [INFO] [stdout] test run_block_av_flat::tests::test_increment_run ... ok [INFO] [stdout] test dynamic_bwt::tests::test_load_dynamicbwt_from_npy ... ok [INFO] [stdout] test run_block_av_flat::tests::test_insert_splitting ... ok [INFO] [stdout] test run_block_av_flat::tests::test_to_vec ... ok [INFO] [stdout] test string_util::tests::test_convert_itos ... ok [INFO] [stdout] test string_util::tests::test_convert_stoi ... ok [INFO] [stdout] test string_util::tests::test_reverse_complement_i ... ok [INFO] [stdout] test run_block_av_flat::tests::test_insert ... ok [INFO] [stdout] test string_util::tests::test_simple_index ... ok [INFO] [stdout] test run_block_av_flat::tests::test_block_splits ... ok [INFO] [stdout] test dynamic_bwt::tests::test_sampled_bwt ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_run_iter ... ok [INFO] [stdout] test rle_bplus_tree::tests::test_10krandom_insert ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 47 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 18.63s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/msbwt2-build.rs (/opt/rustwide/target/debug/deps/msbwt2_build-f29270069736c8bf) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/msbwt2-convert.rs (/opt/rustwide/target/debug/deps/msbwt2_convert-33be9c991fb7feb1) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests msbwt2 [INFO] [stdout] [INFO] [stdout] running 38 tests [INFO] [stdout] test src/bwt_util.rs - bwt_util::naive_bwt (line 148) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::get_total_size (line 231) ... ok [INFO] [stdout] test src/bwt_util.rs - bwt_util::generate_offset_hashmap (line 64) ... ok [INFO] [stdout] test src/bwt_converter.rs - bwt_converter::convert_to_vec (line 19) ... ok [INFO] [stdout] test src/bwt_converter.rs - bwt_converter::save_bwt_numpy (line 89) ... FAILED [INFO] [stdout] test src/bwt_converter.rs - bwt_converter::save_bwt_runs_numpy (line 139) ... FAILED [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::get_symbol_count (line 213) ... ok [INFO] [stdout] test src/bwt_util.rs - bwt_util::pairwise_bwt_merge (line 96) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::load_numpy_file (line 124) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::new (line 265) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::insert_string (line 296) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::to_vec (line 385) ... ok [INFO] [stdout] test src/lib.rs - (line 20) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::load_vector (line 63) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::run_iter (line 419) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::DynamicBWT::iter (line 399) ... ok [INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::load_numpy_file (line 49) ... ok [INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::get_symbol_count (line 64) ... ok [INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::count_kmer (line 105) ... ok [INFO] [stdout] test src/lib.rs - (line 30) ... ok [INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::get_total_size (line 79) ... ok [INFO] [stdout] test src/dynamic_bwt.rs - dynamic_bwt::create_from_fastx (line 439) ... ok [INFO] [stdout] test src/msbwt_core.rs - msbwt_core::BWT::load_vector (line 33) ... ok [INFO] [stdout] test src/rle_bplus_tree.rs - rle_bplus_tree::RLEBPlusTree::count (line 138) ... ok [INFO] [stdout] test src/rle_bplus_tree.rs - rle_bplus_tree::RLEBPlusTree::to_vec (line 401) ... ok [INFO] [stdout] test src/rle_bplus_tree.rs - rle_bplus_tree::RLEBPlusTree::run_iter (line 443) ... ok [INFO] [stdout] test src/rle_bplus_tree.rs - rle_bplus_tree::RLEBPlusTree::insert_and_count (line 196) ... ok [INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::load_vector (line 49) ... ok [INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::get_symbol_count (line 161) ... ok [INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::load_numpy_file (line 72) ... ok [INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::new (line 293) ... ok [INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::get_total_size (line 179) ... ok [INFO] [stdout] test src/rle_bwt.rs - rle_bwt::RleBWT::with_bin_power (line 305) ... ok [INFO] [stdout] test src/string_util.rs - string_util::convert_itos (line 73) ... ok [INFO] [stdout] test src/run_block_av_flat.rs - run_block_av_flat::RLEBlock::count (line 84) ... ok [INFO] [stdout] test src/run_block_av_flat.rs - run_block_av_flat::RLEBlock::insert_and_count (line 133) ... ok [INFO] [stdout] test src/string_util.rs - string_util::reverse_complement_i (line 38) ... ok [INFO] [stdout] test src/string_util.rs - string_util::convert_stoi (line 56) ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/bwt_converter.rs - bwt_converter::save_bwt_numpy (line 89) stdout ---- [INFO] [stdout] Test executable failed (exit status: 101). [INFO] [stdout] [INFO] [stdout] stderr: [INFO] [stdout] [INFO] [stdout] thread 'main' (214) panicked at src/bwt_converter.rs:12:41: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x587e92d9a022 - std::backtrace_rs::backtrace::libunwind::trace::h62f3c6bea0fedab3 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x587e92d9a022 - std::backtrace_rs::backtrace::trace_unsynchronized::hc41aaca6c0af0bde [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x587e92d9a022 - std::sys::backtrace::_print_fmt::h33ac2b97007106cc [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x587e92d9a022 - ::fmt::h4e0a3aeea0f9c085 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x587e92da956f - core::fmt::rt::Argument::fmt::h1edd6a3e00b22f10 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x587e92da956f - core::fmt::write::hecf68a131630c74d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/mod.rs:1468:25 [INFO] [stdout] 6: 0x587e92d78151 - std::io::default_write_fmt::haf8355dc2afbec95 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x587e92d78151 - std::io::Write::write_fmt::h93c9a261259c931a [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x587e92d7d582 - std::sys::backtrace::BacktraceLock::print::h75160192768e5621 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x587e92d7ee3c - std::panicking::default_hook::{{closure}}::h14d82797cfb1ddcb [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x587e92d7ec96 - std::panicking::default_hook::h63f9bf8161c5d325 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:328:9 [INFO] [stdout] 11: 0x587e92d7f4c5 - std::panicking::panic_with_hook::h3173740e06bd0752 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:834:13 [INFO] [stdout] 12: 0x587e92d7f35a - std::panicking::panic_handler::{{closure}}::hbac492c61eb56a87 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:707:13 [INFO] [stdout] 13: 0x587e92d7d6c9 - std::sys::backtrace::__rust_end_short_backtrace::haa3eac3df9535320 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 14: 0x587e92d6cb5d - __rustc[de0091b922c53d7e]::rust_begin_unwind [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:698:5 [INFO] [stdout] 15: 0x587e92dacb10 - core::panicking::panic_fmt::h5138da2ef87be35b [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panicking.rs:75:14 [INFO] [stdout] 16: 0x587e92dac156 - core::result::unwrap_failed::h5d9b16b0b732a2ac [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/result.rs:1855:5 [INFO] [stdout] 17: 0x587e92d3727f - rust_out::main::_doctest_main_src_bwt_converter_rs_89_0::ha7b777082961a892 [INFO] [stdout] 18: 0x587e92d37056 - rust_out::main::hcbdc0960c876f2af [INFO] [stdout] 19: 0x587e92d34913 - core::ops::function::FnOnce::call_once::hfb4119cacd246208 [INFO] [stdout] 20: 0x587e92d34846 - std::sys::backtrace::__rust_begin_short_backtrace::h410c329a888fe2f7 [INFO] [stdout] 21: 0x587e92d34829 - std::rt::lang_start::{{closure}}::h39fc2126d871a896 [INFO] [stdout] 22: 0x587e92d79600 - core::ops::function::impls:: for &F>::call_once::hc7ed5622678f5124 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:287:21 [INFO] [stdout] 23: 0x587e92d79600 - std::panicking::catch_unwind::do_call::hc59414a11cf2a25a [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stdout] 24: 0x587e92d79600 - std::panicking::catch_unwind::hff67b45e0819a036 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stdout] 25: 0x587e92d79600 - std::panic::catch_unwind::hec0fb0db85f7fd60 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stdout] 26: 0x587e92d79600 - std::rt::lang_start_internal::{{closure}}::h74bea026352620a3 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/rt.rs:175:24 [INFO] [stdout] 27: 0x587e92d79600 - std::panicking::catch_unwind::do_call::h931ef1bf7bdfcae2 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stdout] 28: 0x587e92d79600 - std::panicking::catch_unwind::h3816830c825cbe04 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stdout] 29: 0x587e92d79600 - std::panic::catch_unwind::h408406c8f02ebb9d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stdout] 30: 0x587e92d79600 - std::rt::lang_start_internal::hce2b8b328837374b [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/rt.rs:171:5 [INFO] [stdout] 31: 0x587e92d34811 - std::rt::lang_start::h866de1957bb2b812 [INFO] [stdout] 32: 0x587e92d37525 - main [INFO] [stdout] 33: 0x7cdacaf111ca - [INFO] [stdout] 34: 0x7cdacaf1128b - __libc_start_main [INFO] [stdout] 35: 0x587e92d33a15 - _start [INFO] [stdout] 36: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] ---- src/bwt_converter.rs - bwt_converter::save_bwt_runs_numpy (line 139) stdout ---- [INFO] [stdout] Test executable failed (exit status: 101). [INFO] [stdout] [INFO] [stdout] stderr: [INFO] [stdout] [INFO] [stdout] thread 'main' (240) panicked at src/bwt_converter.rs:11:56: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5643521ce062 - std::backtrace_rs::backtrace::libunwind::trace::h62f3c6bea0fedab3 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x5643521ce062 - std::backtrace_rs::backtrace::trace_unsynchronized::hc41aaca6c0af0bde [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x5643521ce062 - std::sys::backtrace::_print_fmt::h33ac2b97007106cc [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x5643521ce062 - ::fmt::h4e0a3aeea0f9c085 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x5643521ddcef - core::fmt::rt::Argument::fmt::h1edd6a3e00b22f10 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x5643521ddcef - core::fmt::write::hecf68a131630c74d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/mod.rs:1468:25 [INFO] [stdout] 6: 0x5643521ac191 - std::io::default_write_fmt::haf8355dc2afbec95 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x5643521ac191 - std::io::Write::write_fmt::h93c9a261259c931a [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x5643521b15c2 - std::sys::backtrace::BacktraceLock::print::h75160192768e5621 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x5643521b2e7c - std::panicking::default_hook::{{closure}}::h14d82797cfb1ddcb [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x5643521b2cd6 - std::panicking::default_hook::h63f9bf8161c5d325 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:328:9 [INFO] [stdout] 11: 0x5643521b3505 - std::panicking::panic_with_hook::h3173740e06bd0752 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:834:13 [INFO] [stdout] 12: 0x5643521b339a - std::panicking::panic_handler::{{closure}}::hbac492c61eb56a87 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:707:13 [INFO] [stdout] 13: 0x5643521b1709 - std::sys::backtrace::__rust_end_short_backtrace::haa3eac3df9535320 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 14: 0x5643521a0b9d - __rustc[de0091b922c53d7e]::rust_begin_unwind [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:698:5 [INFO] [stdout] 15: 0x5643521e53b0 - core::panicking::panic_fmt::h5138da2ef87be35b [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panicking.rs:75:14 [INFO] [stdout] 16: 0x5643521e49f6 - core::result::unwrap_failed::h5d9b16b0b732a2ac [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/result.rs:1855:5 [INFO] [stdout] 17: 0x56435216a5ec - rust_out::main::_doctest_main_src_bwt_converter_rs_139_0::h17b365b221371c50 [INFO] [stdout] 18: 0x56435216a406 - rust_out::main::hcbdc0960c876f2af [INFO] [stdout] 19: 0x5643521634d3 - core::ops::function::FnOnce::call_once::hfb4119cacd246208 [INFO] [stdout] 20: 0x564352163226 - std::sys::backtrace::__rust_begin_short_backtrace::h410c329a888fe2f7 [INFO] [stdout] 21: 0x564352163209 - std::rt::lang_start::{{closure}}::h39fc2126d871a896 [INFO] [stdout] 22: 0x5643521ad640 - core::ops::function::impls:: for &F>::call_once::hc7ed5622678f5124 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:287:21 [INFO] [stdout] 23: 0x5643521ad640 - std::panicking::catch_unwind::do_call::hc59414a11cf2a25a [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stdout] 24: 0x5643521ad640 - std::panicking::catch_unwind::hff67b45e0819a036 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stdout] 25: 0x5643521ad640 - std::panic::catch_unwind::hec0fb0db85f7fd60 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stdout] 26: 0x5643521ad640 - std::rt::lang_start_internal::{{closure}}::h74bea026352620a3 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/rt.rs:175:24 [INFO] [stdout] 27: 0x5643521ad640 - std::panicking::catch_unwind::do_call::h931ef1bf7bdfcae2 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stdout] 28: 0x5643521ad640 - std::panicking::catch_unwind::h3816830c825cbe04 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stdout] 29: 0x5643521ad640 - std::panic::catch_unwind::h408406c8f02ebb9d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stdout] 30: 0x5643521ad640 - std::rt::lang_start_internal::hce2b8b328837374b [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/rt.rs:171:5 [INFO] [stdout] 31: 0x5643521631f1 - std::rt::lang_start::h866de1957bb2b812 [INFO] [stdout] 32: 0x56435216a915 - main [INFO] [stdout] 33: 0x75833b70b1ca - [INFO] [stdout] 34: 0x75833b70b28b - __libc_start_main [INFO] [stdout] 35: 0x5643521626a5 - _start [INFO] [stdout] 36: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/bwt_converter.rs - bwt_converter::save_bwt_numpy (line 89) [INFO] [stdout] src/bwt_converter.rs - bwt_converter::save_bwt_runs_numpy (line 139) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 36 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 5.84s [INFO] [stdout] [INFO] [stderr] error: doctest failed, to rerun pass `--doc` [INFO] running `Command { std: "docker" "inspect" "1f61650d2da342a79b53a6a8464e3ea706bf0ec7075fe7285ba638bc151e3cb2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1f61650d2da342a79b53a6a8464e3ea706bf0ec7075fe7285ba638bc151e3cb2", kill_on_drop: false }` [INFO] [stdout] 1f61650d2da342a79b53a6a8464e3ea706bf0ec7075fe7285ba638bc151e3cb2