[INFO] fetching crate mm2 0.25.6... [INFO] testing mm2-0.25.6 against 1.91.0 for beta-1.92-2 [INFO] extracting crate mm2 0.25.6 into /workspace/builds/worker-4-tc1/source [INFO] started tweaking crates.io crate mm2 0.25.6 [INFO] finished tweaking crates.io crate mm2 0.25.6 [INFO] tweaked toml for crates.io crate mm2 0.25.6 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate mm2 0.25.6 on toolchain 1.91.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate mm2 0.25.6 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded intervaltree v0.2.7 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded statrs v0.17.1 [INFO] [stderr] Downloaded console v0.15.10 [INFO] [stderr] Downloaded nalgebra-macros v0.2.2 [INFO] [stderr] Downloaded gskits v0.15.12 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded clap_derive v4.5.24 [INFO] [stderr] Downloaded sysinfo v0.34.2 [INFO] [stderr] Downloaded multimap v0.9.1 [INFO] [stderr] Downloaded simba v0.6.0 [INFO] [stderr] Downloaded indicatif v0.17.9 [INFO] [stderr] Downloaded nalgebra v0.29.0 [INFO] [stderr] Downloaded bio v1.6.0 [INFO] [stderr] Downloaded ordered-float v3.9.2 [INFO] [stderr] Downloaded serde_json v1.0.137 [INFO] [stderr] Downloaded clap v4.5.27 [INFO] [stderr] Downloaded derive-new v0.7.0 [INFO] [stderr] Downloaded csv-core v0.1.11 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded buffer-redux v1.0.2 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded libz-sys v1.1.21 [INFO] [stderr] Downloaded minimap2 v0.1.23+minimap2.2.28 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded statrs v0.16.1 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded bio v2.0.3 [INFO] [stderr] Downloaded rust-htslib v0.49.0 [INFO] [stderr] Downloaded multimap v0.10.0 [INFO] [stderr] Downloaded bytemuck v1.21.0 [INFO] [stderr] Downloaded hp_tr_finder v0.2.3 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded nalgebra v0.32.6 [INFO] [stderr] Downloaded minimap2-sys v0.1.21+minimap2.2.28 [INFO] [stderr] Downloaded cc v1.2.10 [INFO] [stderr] Downloaded unicode-ident v1.0.15 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded curl-sys v0.4.78+curl-8.11.0 [INFO] [stderr] Downloaded needletail v0.6.1 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] [stderr] Downloaded clap_builder v4.5.27 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 60b0907af59e2317e3997551a8c4bde0e5097f3ee393baa8226506e5b343b059 [INFO] running `Command { std: "docker" "start" "-a" "60b0907af59e2317e3997551a8c4bde0e5097f3ee393baa8226506e5b343b059", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "60b0907af59e2317e3997551a8c4bde0e5097f3ee393baa8226506e5b343b059", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "60b0907af59e2317e3997551a8c4bde0e5097f3ee393baa8226506e5b343b059", kill_on_drop: false }` [INFO] [stdout] 60b0907af59e2317e3997551a8c4bde0e5097f3ee393baa8226506e5b343b059 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3d43842fd1d03731d7edfa269aebd43c09146635d64432fd977dce92a7da0ce8 [INFO] running `Command { std: "docker" "start" "-a" "3d43842fd1d03731d7edfa269aebd43c09146635d64432fd977dce92a7da0ce8", kill_on_drop: false }` [INFO] [stderr] Compiling unicode-ident v1.0.15 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling bytemuck v1.21.0 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Compiling rustversion v1.0.19 [INFO] [stderr] Compiling proc-macro2 v1.0.93 [INFO] [stderr] Compiling cc v1.2.10 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling quote v1.0.38 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling syn v2.0.96 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling cmake v0.1.52 [INFO] [stderr] Compiling openssl-src v300.4.1+3.4.0 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling libloading v0.8.6 [INFO] 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[INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling portable-atomic v1.10.0 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling synstructure v0.13.1 [INFO] [stderr] Compiling form_urlencoded v1.2.1 [INFO] [stderr] Compiling minimap2-sys v0.1.21+minimap2.2.28 [INFO] [stderr] Compiling zerofrom-derive v0.1.5 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Compiling zerovec-derive v0.10.3 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.217 [INFO] [stderr] Compiling zerofrom v0.1.5 [INFO] [stderr] Compiling yoke v0.7.5 [INFO] [stderr] Compiling zerovec v0.10.4 [INFO] [stderr] Compiling icu_provider_macros v1.5.0 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling tinystr v0.7.6 [INFO] [stderr] Compiling icu_locid v1.5.0 [INFO] [stderr] 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[stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Compiling clap_builder v4.5.27 [INFO] [stderr] Compiling time v0.3.37 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling indicatif v0.17.9 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling uuid v1.12.1 [INFO] [stderr] Compiling needletail v0.6.1 [INFO] [stderr] Compiling chrono v0.4.39 [INFO] [stderr] Compiling statrs v0.17.1 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling bio v2.0.3 [INFO] [stderr] Compiling multimap v0.9.1 [INFO] [stderr] Compiling tracing-serde v0.2.0 [INFO] [stderr] Compiling clap_derive v4.5.24 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.14 [INFO] [stderr] Compiling crossbeam-queue v0.3.12 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling ordered-float v3.9.2 [INFO] [stderr] Compiling intervaltree v0.2.7 [INFO] [stderr] Compiling sysinfo v0.34.2 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling strum v0.25.0 [INFO] [stderr] Compiling tracing-subscriber v0.3.19 [INFO] [stderr] Compiling clap v4.5.27 [INFO] [stderr] Compiling hp_tr_finder v0.2.3 [INFO] [stderr] Compiling crossbeam v0.8.4 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling minimap2 v0.1.23+minimap2.2.28 [INFO] [stderr] Compiling statrs v0.16.1 [INFO] [stderr] Compiling bio v1.6.0 [INFO] [stderr] Compiling rust-htslib v0.49.0 [INFO] [stderr] Compiling gskits v0.15.12 [INFO] [stderr] Compiling mm2 v0.25.6 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `clap::builder::Str` [INFO] [stdout] --> src/align_processor/hp_tr_metric.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use clap::builder::Str; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `ext::BamRecordExtensions` and `self` [INFO] [stdout] --> src/bam_writer.rs:9:24 [INFO] [stdout] | [INFO] [stdout] 9 | use rust_htslib::bam::{ext::BamRecordExtensions, header::HeaderRecord, record::{self, Aux}, Header}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `dump_smc_input_bam` is never used [INFO] [stdout] --> src/bin/bam-rw.rs:5:4 [INFO] [stdout] | [INFO] [stdout] 5 | fn dump_smc_input_bam(subreads_bam_path: &str, o_filepath: &str, bam_threads: Option) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 7m 06s [INFO] running `Command { std: "docker" "inspect" "3d43842fd1d03731d7edfa269aebd43c09146635d64432fd977dce92a7da0ce8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3d43842fd1d03731d7edfa269aebd43c09146635d64432fd977dce92a7da0ce8", kill_on_drop: false }` [INFO] [stdout] 3d43842fd1d03731d7edfa269aebd43c09146635d64432fd977dce92a7da0ce8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9ba137668e3638757729325f2cd5a17d9ef14bb09dd2b63f83d67108e092e645 [INFO] running `Command { std: "docker" "start" "-a" "9ba137668e3638757729325f2cd5a17d9ef14bb09dd2b63f83d67108e092e645", kill_on_drop: false }` [INFO] [stderr] Compiling mm2 v0.25.6 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `clap::builder::Str` [INFO] [stdout] --> src/align_processor/hp_tr_metric.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use clap::builder::Str; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `ext::BamRecordExtensions` and `self` [INFO] [stdout] --> src/bam_writer.rs:9:24 [INFO] [stdout] | [INFO] [stdout] 9 | use rust_htslib::bam::{ext::BamRecordExtensions, header::HeaderRecord, record::{self, Aux}, Header}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `intervaltree` [INFO] [stdout] --> src/bin/gsmm2-hp-tr-metric.rs:518:46 [INFO] [stdout] | [INFO] [stdout] 518 | use hp_tr_finder::{all_seq_hp_tr_finder, intervaltree, UnitAndRepeats}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `clap::builder::Str` [INFO] [stdout] --> src/align_processor/hp_tr_metric.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use clap::builder::Str; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `ext::BamRecordExtensions` and `self` [INFO] [stdout] --> src/bam_writer.rs:9:24 [INFO] [stdout] | [INFO] [stdout] 9 | use rust_htslib::bam::{ext::BamRecordExtensions, header::HeaderRecord, record::{self, Aux}, Header}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `dump_smc_input_bam` is never used [INFO] [stdout] --> src/bin/bam-rw.rs:5:4 [INFO] [stdout] | [INFO] [stdout] 5 | fn dump_smc_input_bam(subreads_bam_path: &str, o_filepath: &str, bam_threads: Option) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/bin/gsmm2-aligned-metric.rs:499:13 [INFO] [stdout] | [INFO] [stdout] 499 | ... let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAACCGGCGA... [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/bin/gsmm2-time-err.rs:547:13 [INFO] [stdout] | [INFO] [stdout] 547 | ... let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAACCGGCGA... [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/bin/gsmm2-hp-tr-metric.rs:567:13 [INFO] [stdout] | [INFO] [stdout] 567 | ... let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAACCGGCGA... [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `records` [INFO] [stdout] --> src/lib.rs:687:17 [INFO] [stdout] | [INFO] [stdout] 687 | let mut records = vec![r1, r2, r3]; [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_records` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/lib.rs:687:13 [INFO] [stdout] | [INFO] [stdout] 687 | let mut records = vec![r1, r2, r3]; [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aligner` [INFO] [stdout] --> src/lib.rs:708:17 [INFO] [stdout] | [INFO] [stdout] 708 | let aligner = NoMemLeakAligner(aligner); [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_aligner` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seq` [INFO] [stdout] --> src/lib.rs:1057:13 [INFO] [stdout] | [INFO] [stdout] 1057 | let seq = b"AANNNNNNNNNNNNNAAAAAAAAANNNNCCCGTTT"; [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 7.21s [INFO] running `Command { std: "docker" "inspect" "9ba137668e3638757729325f2cd5a17d9ef14bb09dd2b63f83d67108e092e645", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9ba137668e3638757729325f2cd5a17d9ef14bb09dd2b63f83d67108e092e645", kill_on_drop: false }` [INFO] [stdout] 9ba137668e3638757729325f2cd5a17d9ef14bb09dd2b63f83d67108e092e645 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 56361dd492755c006207926fcb34b76abfe836ae2fbffbf53ef4beb73bd2586c [INFO] running `Command { std: "docker" "start" "-a" "56361dd492755c006207926fcb34b76abfe836ae2fbffbf53ef4beb73bd2586c", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `clap::builder::Str` [INFO] [stderr] --> src/align_processor/hp_tr_metric.rs:5:5 [INFO] [stderr] | [INFO] [stderr] 5 | use clap::builder::Str; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused imports: `ext::BamRecordExtensions` and `self` [INFO] [stderr] --> src/bam_writer.rs:9:24 [INFO] [stderr] | [INFO] [stderr] 9 | use rust_htslib::bam::{ext::BamRecordExtensions, header::HeaderRecord, record::{self, Aux}, Header}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ ^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `records` [INFO] [stderr] --> src/lib.rs:687:17 [INFO] [stderr] | [INFO] [stderr] 687 | let mut records = vec![r1, r2, r3]; [INFO] [stderr] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_records` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/lib.rs:687:13 [INFO] [stderr] | [INFO] [stderr] 687 | let mut records = vec![r1, r2, r3]; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `aligner` [INFO] [stderr] --> src/lib.rs:708:17 [INFO] [stderr] | [INFO] [stderr] 708 | let aligner = NoMemLeakAligner(aligner); [INFO] [stderr] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_aligner` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `seq` [INFO] [stderr] --> src/lib.rs:1057:13 [INFO] [stderr] | [INFO] [stderr] 1057 | let seq = b"AANNNNNNNNNNNNNAAAAAAAAANNNNCCCGTTT"; [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stderr] [INFO] [stderr] warning: `mm2` (lib) generated 2 warnings (run `cargo fix --lib -p mm2` to apply 2 suggestions) [INFO] [stderr] warning: `mm2` (lib test) generated 6 warnings (2 duplicates) (run `cargo fix --lib -p mm2 --tests` to apply 1 suggestion) [INFO] [stderr] warning: unused import: `intervaltree` [INFO] [stderr] --> src/bin/gsmm2-hp-tr-metric.rs:518:46 [INFO] [stderr] | [INFO] [stderr] 518 | use hp_tr_finder::{all_seq_hp_tr_finder, intervaltree, UnitAndRepeats}; [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `seq` [INFO] [stderr] --> src/bin/gsmm2-hp-tr-metric.rs:567:13 [INFO] [stderr] | [INFO] [stderr] 567 | ... let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAACCGGCGA... [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `seq` [INFO] [stderr] --> src/bin/gsmm2-aligned-metric.rs:499:13 [INFO] [stderr] | [INFO] [stderr] 499 | ... let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAACCGGCGA... [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `seq` [INFO] [stderr] --> src/bin/gsmm2-time-err.rs:547:13 [INFO] [stderr] | [INFO] [stderr] 547 | ... let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAACCGGCGA... [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_seq` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: function `dump_smc_input_bam` is never used [INFO] [stderr] --> src/bin/bam-rw.rs:5:4 [INFO] [stderr] | [INFO] [stderr] 5 | fn dump_smc_input_bam(subreads_bam_path: &str, o_filepath: &str, bam_threads: Option) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: `mm2` (bin "gsmm2-hp-tr-metric" test) generated 2 warnings (run `cargo fix --bin "gsmm2-hp-tr-metric" --tests` to apply 1 suggestion) [INFO] [stderr] warning: `mm2` (bin "gsmm2-aligned-metric" test) generated 1 warning [INFO] [stderr] warning: `mm2` (bin "gsmm2-time-err" test) generated 1 warning [INFO] [stderr] warning: `mm2` (bin "bam-rw" test) generated 1 warning [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.26s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/mm2-b10bc801a3eb1ada) [INFO] [stdout] [INFO] [stdout] running 16 tests [INFO] [stdout] test align_processor::align_metric::test::test_fill_align_info_from_align_pair ... ok [INFO] [stdout] test aligned_pairs::test::test_align_info ... ok [INFO] [stdout] test align_processor::time_err_metric::test::test_time_err_metric ... ok [INFO] [stdout] test mapping_ext::test::test_mapping_ext ... ok [INFO] [stdout] test tests::test_align_n ... ok [INFO] [stdout] test tests::test_align_short ... ok [INFO] [stdout] test tests::test_align_short2 ... ok [INFO] [stdout] test tests::test_bio ... ok [INFO] [stdout] test tests::test_bio_aign_n ... ok [INFO] [stdout] test tests::test_set_primary_alignment ... ok [INFO] [stdout] test tests::test_align ... ok [INFO] [stdout] test tests::test_align_single_query_to_target2 ... FAILED [INFO] [stdout] test tests::test_align_single_query_to_target ... FAILED [INFO] [stdout] test tests::test_align_single_query_to_target4 ... FAILED [INFO] [stdout] test tests::test_align_single_query_to_target3 ... FAILED [INFO] [stdout] test tests::build_aligner_memory_leak ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::test_align_single_query_to_target2 stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'tests::test_align_single_query_to_target2' (26) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39: [INFO] [stdout] open file error: test_data/MG1655.fa: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x596782aad372 - std::backtrace_rs::backtrace::libunwind::trace::h62f3c6bea0fedab3 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x596782aad372 - std::backtrace_rs::backtrace::trace_unsynchronized::hc41aaca6c0af0bde [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x596782aad372 - std::sys::backtrace::_print_fmt::h33ac2b97007106cc [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x596782aad372 - ::fmt::h4e0a3aeea0f9c085 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x596782abe5ef - core::fmt::rt::Argument::fmt::h1edd6a3e00b22f10 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x596782abe5ef - core::fmt::write::hecf68a131630c74d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/mod.rs:1468:25 [INFO] [stdout] 6: 0x596782a7a4a1 - std::io::default_write_fmt::ha6b238eff7f0ef8a [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x596782a7a4a1 - std::io::Write::write_fmt::h9846fe3d2a36c1ea [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x596782a86572 - std::sys::backtrace::BacktraceLock::print::h75160192768e5621 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x596782a8b2bf - std::panicking::default_hook::{{closure}}::h14d82797cfb1ddcb [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x596782a8b151 - std::panicking::default_hook::h63f9bf8161c5d325 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:325:9 [INFO] [stdout] 11: 0x5967829e308e - as core::ops::function::Fn>::call::hb8126f8384f98101 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/alloc/src/boxed.rs:1999:9 [INFO] [stdout] 12: 0x5967829e308e - test::test_main_with_exit_callback::{{closure}}::hae96ae0cd2f2ce70 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x596782a8ba2f - as core::ops::function::Fn>::call::ha703f6686c81d0c6 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/alloc/src/boxed.rs:1999:9 [INFO] [stdout] 14: 0x596782a8ba2f - std::panicking::panic_with_hook::h3173740e06bd0752 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:842:13 [INFO] [stdout] 15: 0x596782a8b7da - std::panicking::panic_handler::{{closure}}::hbac492c61eb56a87 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:707:13 [INFO] [stdout] 16: 0x596782a866b9 - std::sys::backtrace::__rust_end_short_backtrace::haa3eac3df9535320 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 17: 0x596782a6eacd - __rustc[de0091b922c53d7e]::rust_begin_unwind [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:698:5 [INFO] [stdout] 18: 0x596782ac62e0 - core::panicking::panic_fmt::h5138da2ef87be35b [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x596782ac5886 - core::result::unwrap_failed::h5d9b16b0b732a2ac [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/result.rs:1855:5 [INFO] [stdout] 20: 0x596782a31c1e - core::result::Result::expect::hba07c88002b4149d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/result.rs:1178:23 [INFO] [stdout] 21: 0x596782a3aacf - gskits::fastx_reader::fasta_reader::FastaFileReader::new::h1966bb474704c052 [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39 [INFO] [stdout] 22: 0x5967829a7920 - mm2::tests::test_align_single_query_to_target2::h0fb818a06805e9aa [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:715:23 [INFO] [stdout] 23: 0x5967829a87c7 - mm2::tests::test_align_single_query_to_target2::{{closure}}::h9fadd435b7bb28c9 [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:713:44 [INFO] [stdout] 24: 0x5967829adb46 - core::ops::function::FnOnce::call_once::h4d197e3a732e3b92 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x5967829e2e6b - core::ops::function::FnOnce::call_once::h8f50ae93d93b62b4 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x5967829e2e6b - test::__rust_begin_short_backtrace::h447963718d05a644 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:663:18 [INFO] [stdout] 27: 0x5967829f8aa5 - test::run_test_in_process::{{closure}}::hf890ba4755ca86c0 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:686:74 [INFO] [stdout] 28: 0x5967829f8aa5 - as core::ops::function::FnOnce<()>>::call_once::h31e4b2860e583faa [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 29: 0x5967829f8aa5 - std::panicking::catch_unwind::do_call::hec7cdbbe797e2cab [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stdout] 30: 0x5967829f8aa5 - std::panicking::catch_unwind::h24d3b93458b5ba67 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stdout] 31: 0x5967829f8aa5 - std::panic::catch_unwind::h46eeec7cf9c9336c [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stdout] 32: 0x5967829f8aa5 - test::run_test_in_process::h290de6e559006104 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:686:27 [INFO] [stdout] 33: 0x5967829f8aa5 - test::run_test::{{closure}}::h26eeb2c5f7e9a995 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:607:43 [INFO] [stdout] 34: 0x5967829cf2a4 - test::run_test::{{closure}}::h85af00882daabeaa [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:637:41 [INFO] [stdout] 35: 0x5967829cf2a4 - std::sys::backtrace::__rust_begin_short_backtrace::h9d9305dda51fa5f2 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:158:18 [INFO] [stdout] 36: 0x5967829d2c4a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hc6aada8b43f0527b [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 37: 0x5967829d2c4a - as core::ops::function::FnOnce<()>>::call_once::ha89fe5505c1206f5 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 38: 0x5967829d2c4a - std::panicking::catch_unwind::do_call::he3e0bef721d99583 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stdout] 39: 0x5967829d2c4a - std::panicking::catch_unwind::ha8241964d3d773cd [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stdout] 40: 0x5967829d2c4a - std::panic::catch_unwind::ha8554bc7696cae72 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stdout] 41: 0x5967829d2c4a - std::thread::Builder::spawn_unchecked_::{{closure}}::he06f1f62b4c90f8d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 42: 0x5967829d2c4a - core::ops::function::FnOnce::call_once{{vtable.shim}}::ha7fd20ecae19b9b9 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 43: 0x596782a8189f - as core::ops::function::FnOnce>::call_once::h43642ed9c40e0ab2 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 44: 0x596782a8189f - std::sys::thread::unix::Thread::new::thread_start::h38da0f633f090ce2 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/thread/unix.rs:126:17 [INFO] [stdout] 45: 0x713eabe3eaa4 - [INFO] [stdout] 46: 0x713eabecba64 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::test_align_single_query_to_target stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'tests::test_align_single_query_to_target' (25) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39: [INFO] [stdout] open file error: test_data/GCF_000005845.2_ASM584v2_genomic.fna: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x596782aad372 - std::backtrace_rs::backtrace::libunwind::trace::h62f3c6bea0fedab3 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x596782aad372 - std::backtrace_rs::backtrace::trace_unsynchronized::hc41aaca6c0af0bde [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x596782aad372 - std::sys::backtrace::_print_fmt::h33ac2b97007106cc [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x596782aad372 - ::fmt::h4e0a3aeea0f9c085 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x596782abe5ef - core::fmt::rt::Argument::fmt::h1edd6a3e00b22f10 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x596782abe5ef - core::fmt::write::hecf68a131630c74d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/mod.rs:1468:25 [INFO] [stdout] 6: 0x596782a7a4a1 - std::io::default_write_fmt::ha6b238eff7f0ef8a [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x596782a7a4a1 - std::io::Write::write_fmt::h9846fe3d2a36c1ea [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x596782a86572 - std::sys::backtrace::BacktraceLock::print::h75160192768e5621 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x596782a8b2bf - std::panicking::default_hook::{{closure}}::h14d82797cfb1ddcb [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x596782a8b151 - std::panicking::default_hook::h63f9bf8161c5d325 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:325:9 [INFO] [stdout] 11: 0x5967829e308e - as core::ops::function::Fn>::call::hb8126f8384f98101 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/alloc/src/boxed.rs:1999:9 [INFO] [stdout] 12: 0x5967829e308e - test::test_main_with_exit_callback::{{closure}}::hae96ae0cd2f2ce70 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x596782a8ba2f - as core::ops::function::Fn>::call::ha703f6686c81d0c6 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/alloc/src/boxed.rs:1999:9 [INFO] [stdout] 14: 0x596782a8ba2f - std::panicking::panic_with_hook::h3173740e06bd0752 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:842:13 [INFO] [stdout] 15: 0x596782a8b7da - std::panicking::panic_handler::{{closure}}::hbac492c61eb56a87 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:707:13 [INFO] [stdout] 16: 0x596782a866b9 - std::sys::backtrace::__rust_end_short_backtrace::haa3eac3df9535320 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 17: 0x596782a6eacd - __rustc[de0091b922c53d7e]::rust_begin_unwind [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:698:5 [INFO] [stdout] 18: 0x596782ac62e0 - core::panicking::panic_fmt::h5138da2ef87be35b [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x596782ac5886 - core::result::unwrap_failed::h5d9b16b0b732a2ac [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/result.rs:1855:5 [INFO] [stdout] 20: 0x596782a31c1e - core::result::Result::expect::hba07c88002b4149d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/result.rs:1178:23 [INFO] [stdout] 21: 0x596782a3aacf - gskits::fastx_reader::fasta_reader::FastaFileReader::new::h1966bb474704c052 [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39 [INFO] [stdout] 22: 0x5967829a71f0 - mm2::tests::test_align_single_query_to_target::ha241a243a2a8782d [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:639:23 [INFO] [stdout] 23: 0x5967829a7897 - mm2::tests::test_align_single_query_to_target::{{closure}}::h67c4d84c7fe899e8 [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:637:43 [INFO] [stdout] 24: 0x5967829ad916 - core::ops::function::FnOnce::call_once::h0a46f866555564aa [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x5967829e2e6b - core::ops::function::FnOnce::call_once::h8f50ae93d93b62b4 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x5967829e2e6b - test::__rust_begin_short_backtrace::h447963718d05a644 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:663:18 [INFO] [stdout] 27: 0x5967829f8aa5 - test::run_test_in_process::{{closure}}::hf890ba4755ca86c0 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:686:74 [INFO] [stdout] 28: 0x5967829f8aa5 - as core::ops::function::FnOnce<()>>::call_once::h31e4b2860e583faa [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 29: 0x5967829f8aa5 - std::panicking::catch_unwind::do_call::hec7cdbbe797e2cab [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stdout] 30: 0x5967829f8aa5 - std::panicking::catch_unwind::h24d3b93458b5ba67 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stdout] 31: 0x5967829f8aa5 - std::panic::catch_unwind::h46eeec7cf9c9336c [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stdout] 32: 0x5967829f8aa5 - test::run_test_in_process::h290de6e559006104 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:686:27 [INFO] [stdout] 33: 0x5967829f8aa5 - test::run_test::{{closure}}::h26eeb2c5f7e9a995 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:607:43 [INFO] [stdout] 34: 0x5967829cf2a4 - test::run_test::{{closure}}::h85af00882daabeaa [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:637:41 [INFO] [stdout] 35: 0x5967829cf2a4 - std::sys::backtrace::__rust_begin_short_backtrace::h9d9305dda51fa5f2 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:158:18 [INFO] [stdout] 36: 0x5967829d2c4a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hc6aada8b43f0527b [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 37: 0x5967829d2c4a - as core::ops::function::FnOnce<()>>::call_once::ha89fe5505c1206f5 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 38: 0x5967829d2c4a - std::panicking::catch_unwind::do_call::he3e0bef721d99583 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stdout] 39: 0x5967829d2c4a - std::panicking::catch_unwind::ha8241964d3d773cd [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stdout] 40: 0x5967829d2c4a - std::panic::catch_unwind::ha8554bc7696cae72 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stdout] 41: 0x5967829d2c4a - std::thread::Builder::spawn_unchecked_::{{closure}}::he06f1f62b4c90f8d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 42: 0x5967829d2c4a - core::ops::function::FnOnce::call_once{{vtable.shim}}::ha7fd20ecae19b9b9 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 43: 0x596782a8189f - as core::ops::function::FnOnce>::call_once::h43642ed9c40e0ab2 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 44: 0x596782a8189f - std::sys::thread::unix::Thread::new::thread_start::h38da0f633f090ce2 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/thread/unix.rs:126:17 [INFO] [stdout] 45: 0x713eabe3eaa4 - [INFO] [stdout] 46: 0x713eabecba64 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::test_align_single_query_to_target4 stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'tests::test_align_single_query_to_target4' (28) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39: [INFO] [stdout] open file error: test_data/MG1655.fa: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x596782aad372 - std::backtrace_rs::backtrace::libunwind::trace::h62f3c6bea0fedab3 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x596782aad372 - std::backtrace_rs::backtrace::trace_unsynchronized::hc41aaca6c0af0bde [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x596782aad372 - std::sys::backtrace::_print_fmt::h33ac2b97007106cc [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x596782aad372 - ::fmt::h4e0a3aeea0f9c085 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x596782abe5ef - core::fmt::rt::Argument::fmt::h1edd6a3e00b22f10 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x596782abe5ef - core::fmt::write::hecf68a131630c74d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/mod.rs:1468:25 [INFO] [stdout] 6: 0x596782a7a4a1 - std::io::default_write_fmt::ha6b238eff7f0ef8a [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x596782a7a4a1 - std::io::Write::write_fmt::h9846fe3d2a36c1ea [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x596782a86572 - std::sys::backtrace::BacktraceLock::print::h75160192768e5621 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x596782a8b2bf - std::panicking::default_hook::{{closure}}::h14d82797cfb1ddcb [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x596782a8b151 - std::panicking::default_hook::h63f9bf8161c5d325 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:325:9 [INFO] [stdout] 11: 0x5967829e308e - as core::ops::function::Fn>::call::hb8126f8384f98101 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/alloc/src/boxed.rs:1999:9 [INFO] [stdout] 12: 0x5967829e308e - test::test_main_with_exit_callback::{{closure}}::hae96ae0cd2f2ce70 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x596782a8ba2f - as core::ops::function::Fn>::call::ha703f6686c81d0c6 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/alloc/src/boxed.rs:1999:9 [INFO] [stdout] 14: 0x596782a8ba2f - std::panicking::panic_with_hook::h3173740e06bd0752 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:842:13 [INFO] [stdout] 15: 0x596782a8b7da - std::panicking::panic_handler::{{closure}}::hbac492c61eb56a87 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:707:13 [INFO] [stdout] 16: 0x596782a866b9 - std::sys::backtrace::__rust_end_short_backtrace::haa3eac3df9535320 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 17: 0x596782a6eacd - __rustc[de0091b922c53d7e]::rust_begin_unwind [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:698:5 [INFO] [stdout] 18: 0x596782ac62e0 - core::panicking::panic_fmt::h5138da2ef87be35b [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x596782ac5886 - core::result::unwrap_failed::h5d9b16b0b732a2ac [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/result.rs:1855:5 [INFO] [stdout] 20: 0x596782a31c1e - core::result::Result::expect::hba07c88002b4149d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/result.rs:1178:23 [INFO] [stdout] 21: 0x596782a3aacf - gskits::fastx_reader::fasta_reader::FastaFileReader::new::h1966bb474704c052 [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39 [INFO] [stdout] 22: 0x5967829a91d1 - mm2::tests::test_align_single_query_to_target4::hbec0365ad35abec3 [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:924:23 [INFO] [stdout] 23: 0x5967829a9a07 - mm2::tests::test_align_single_query_to_target4::{{closure}}::h0106dc67c73c0edb [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:922:44 [INFO] [stdout] 24: 0x5967829ad9c6 - core::ops::function::FnOnce::call_once::h20c0a10c6d7c52d0 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x5967829e2e6b - core::ops::function::FnOnce::call_once::h8f50ae93d93b62b4 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x5967829e2e6b - test::__rust_begin_short_backtrace::h447963718d05a644 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:663:18 [INFO] [stdout] 27: 0x5967829f8aa5 - test::run_test_in_process::{{closure}}::hf890ba4755ca86c0 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:686:74 [INFO] [stdout] 28: 0x5967829f8aa5 - as core::ops::function::FnOnce<()>>::call_once::h31e4b2860e583faa [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 29: 0x5967829f8aa5 - std::panicking::catch_unwind::do_call::hec7cdbbe797e2cab [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stdout] 30: 0x5967829f8aa5 - std::panicking::catch_unwind::h24d3b93458b5ba67 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stdout] 31: 0x5967829f8aa5 - std::panic::catch_unwind::h46eeec7cf9c9336c [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stdout] 32: 0x5967829f8aa5 - test::run_test_in_process::h290de6e559006104 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:686:27 [INFO] [stdout] 33: 0x5967829f8aa5 - test::run_test::{{closure}}::h26eeb2c5f7e9a995 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:607:43 [INFO] [stdout] 34: 0x5967829cf2a4 - test::run_test::{{closure}}::h85af00882daabeaa [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:637:41 [INFO] [stdout] 35: 0x5967829cf2a4 - std::sys::backtrace::__rust_begin_short_backtrace::h9d9305dda51fa5f2 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:158:18 [INFO] [stdout] 36: 0x5967829d2c4a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hc6aada8b43f0527b [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 37: 0x5967829d2c4a - as core::ops::function::FnOnce<()>>::call_once::ha89fe5505c1206f5 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 38: 0x5967829d2c4a - std::panicking::catch_unwind::do_call::he3e0bef721d99583 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stdout] 39: 0x5967829d2c4a - std::panicking::catch_unwind::ha8241964d3d773cd [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stdout] 40: 0x5967829d2c4a - std::panic::catch_unwind::ha8554bc7696cae72 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stdout] 41: 0x5967829d2c4a - std::thread::Builder::spawn_unchecked_::{{closure}}::he06f1f62b4c90f8d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 42: 0x5967829d2c4a - core::ops::function::FnOnce::call_once{{vtable.shim}}::ha7fd20ecae19b9b9 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 43: 0x596782a8189f - as core::ops::function::FnOnce>::call_once::h43642ed9c40e0ab2 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 44: 0x596782a8189f - std::sys::thread::unix::Thread::new::thread_start::h38da0f633f090ce2 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/thread/unix.rs:126:17 [INFO] [stdout] 45: 0x713eabe3eaa4 - [INFO] [stdout] 46: 0x713eabecba64 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::test_align_single_query_to_target3 stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'tests::test_align_single_query_to_target3' (27) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39: [INFO] [stdout] open file error: test_data/MG1655.fa: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x596782aad372 - std::backtrace_rs::backtrace::libunwind::trace::h62f3c6bea0fedab3 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x596782aad372 - std::backtrace_rs::backtrace::trace_unsynchronized::hc41aaca6c0af0bde [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x596782aad372 - std::sys::backtrace::_print_fmt::h33ac2b97007106cc [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x596782aad372 - ::fmt::h4e0a3aeea0f9c085 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x596782abe5ef - core::fmt::rt::Argument::fmt::h1edd6a3e00b22f10 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x596782abe5ef - core::fmt::write::hecf68a131630c74d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/mod.rs:1468:25 [INFO] [stdout] 6: 0x596782a7a4a1 - std::io::default_write_fmt::ha6b238eff7f0ef8a [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x596782a7a4a1 - std::io::Write::write_fmt::h9846fe3d2a36c1ea [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x596782a86572 - std::sys::backtrace::BacktraceLock::print::h75160192768e5621 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x596782a8b2bf - std::panicking::default_hook::{{closure}}::h14d82797cfb1ddcb [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x596782a8b151 - std::panicking::default_hook::h63f9bf8161c5d325 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:325:9 [INFO] [stdout] 11: 0x5967829e308e - as core::ops::function::Fn>::call::hb8126f8384f98101 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/alloc/src/boxed.rs:1999:9 [INFO] [stdout] 12: 0x5967829e308e - test::test_main_with_exit_callback::{{closure}}::hae96ae0cd2f2ce70 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x596782a8ba2f - as core::ops::function::Fn>::call::ha703f6686c81d0c6 [INFO] [stderr] error: test failed, to rerun pass `--lib` [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/alloc/src/boxed.rs:1999:9 [INFO] [stdout] 14: 0x596782a8ba2f - std::panicking::panic_with_hook::h3173740e06bd0752 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:842:13 [INFO] [stdout] 15: 0x596782a8b7da - std::panicking::panic_handler::{{closure}}::hbac492c61eb56a87 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:707:13 [INFO] [stdout] 16: 0x596782a866b9 - std::sys::backtrace::__rust_end_short_backtrace::haa3eac3df9535320 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 17: 0x596782a6eacd - __rustc[de0091b922c53d7e]::rust_begin_unwind [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:698:5 [INFO] [stdout] 18: 0x596782ac62e0 - core::panicking::panic_fmt::h5138da2ef87be35b [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x596782ac5886 - core::result::unwrap_failed::h5d9b16b0b732a2ac [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/result.rs:1855:5 [INFO] [stdout] 20: 0x596782a31c1e - core::result::Result::expect::hba07c88002b4149d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/result.rs:1178:23 [INFO] [stdout] 21: 0x596782a3aacf - gskits::fastx_reader::fasta_reader::FastaFileReader::new::h1966bb474704c052 [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gskits-0.15.12/src/fastx_reader/fasta_reader.rs:15:39 [INFO] [stdout] 22: 0x5967829a8870 - mm2::tests::test_align_single_query_to_target3::h1a6112a3262a1d0d [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:802:23 [INFO] [stdout] 23: 0x5967829a9137 - mm2::tests::test_align_single_query_to_target3::{{closure}}::had2c369494116aa8 [INFO] [stdout] at /opt/rustwide/workdir/src/lib.rs:800:44 [INFO] [stdout] 24: 0x5967829add26 - core::ops::function::FnOnce::call_once::hc2c948ddc7516be1 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x5967829e2e6b - core::ops::function::FnOnce::call_once::h8f50ae93d93b62b4 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x5967829e2e6b - test::__rust_begin_short_backtrace::h447963718d05a644 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:663:18 [INFO] [stdout] 27: 0x5967829f8aa5 - test::run_test_in_process::{{closure}}::hf890ba4755ca86c0 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:686:74 [INFO] [stdout] 28: 0x5967829f8aa5 - as core::ops::function::FnOnce<()>>::call_once::h31e4b2860e583faa [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 29: 0x5967829f8aa5 - std::panicking::catch_unwind::do_call::hec7cdbbe797e2cab [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stdout] 30: 0x5967829f8aa5 - std::panicking::catch_unwind::h24d3b93458b5ba67 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stdout] 31: 0x5967829f8aa5 - std::panic::catch_unwind::h46eeec7cf9c9336c [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stdout] 32: 0x5967829f8aa5 - test::run_test_in_process::h290de6e559006104 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:686:27 [INFO] [stdout] 33: 0x5967829f8aa5 - test::run_test::{{closure}}::h26eeb2c5f7e9a995 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:607:43 [INFO] [stdout] 34: 0x5967829cf2a4 - test::run_test::{{closure}}::h85af00882daabeaa [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/test/src/lib.rs:637:41 [INFO] [stdout] 35: 0x5967829cf2a4 - std::sys::backtrace::__rust_begin_short_backtrace::h9d9305dda51fa5f2 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:158:18 [INFO] [stdout] 36: 0x5967829d2c4a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hc6aada8b43f0527b [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 37: 0x5967829d2c4a - as core::ops::function::FnOnce<()>>::call_once::ha89fe5505c1206f5 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 38: 0x5967829d2c4a - std::panicking::catch_unwind::do_call::he3e0bef721d99583 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stdout] 39: 0x5967829d2c4a - std::panicking::catch_unwind::ha8241964d3d773cd [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stdout] 40: 0x5967829d2c4a - std::panic::catch_unwind::ha8554bc7696cae72 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stdout] 41: 0x5967829d2c4a - std::thread::Builder::spawn_unchecked_::{{closure}}::he06f1f62b4c90f8d [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 42: 0x5967829d2c4a - core::ops::function::FnOnce::call_once{{vtable.shim}}::ha7fd20ecae19b9b9 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 43: 0x596782a8189f - as core::ops::function::FnOnce>::call_once::h43642ed9c40e0ab2 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 44: 0x596782a8189f - std::sys::thread::unix::Thread::new::thread_start::h38da0f633f090ce2 [INFO] [stdout] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/thread/unix.rs:126:17 [INFO] [stdout] 45: 0x713eabe3eaa4 - [INFO] [stdout] 46: 0x713eabecba64 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::test_align_single_query_to_target [INFO] [stdout] tests::test_align_single_query_to_target2 [INFO] [stdout] tests::test_align_single_query_to_target3 [INFO] [stdout] tests::test_align_single_query_to_target4 [INFO] [stdout] [INFO] [stdout] test result: FAILED. 12 passed; 4 failed; 0 ignored; 0 measured; 0 filtered out; finished in 14.83s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "56361dd492755c006207926fcb34b76abfe836ae2fbffbf53ef4beb73bd2586c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "56361dd492755c006207926fcb34b76abfe836ae2fbffbf53ef4beb73bd2586c", kill_on_drop: false }` [INFO] [stdout] 56361dd492755c006207926fcb34b76abfe836ae2fbffbf53ef4beb73bd2586c