[INFO] fetching crate librna-sys 0.3.0... [INFO] testing librna-sys-0.3.0 against 1.91.0 for beta-1.92-2 [INFO] extracting crate librna-sys 0.3.0 into /workspace/builds/worker-0-tc1/source [INFO] started tweaking crates.io crate librna-sys 0.3.0 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate librna-sys 0.3.0 [INFO] tweaked toml for crates.io crate librna-sys 0.3.0 written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate librna-sys 0.3.0 on toolchain 1.91.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate librna-sys 0.3.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded shlex v1.1.0 [INFO] [stderr] Downloaded pyo3-macros v0.22.2 [INFO] [stderr] Downloaded pyo3-ffi v0.22.2 [INFO] [stderr] Downloaded prettyplease v0.2.22 [INFO] [stderr] Downloaded pyo3-macros-backend v0.22.2 [INFO] [stderr] Downloaded pyo3 v0.22.2 [INFO] [stderr] Downloaded pyo3-build-config v0.22.2 [INFO] [stderr] Downloaded indoc v2.0.5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 434dd3f7599b80e17d93bb761e01af08e0447beb4be074cac3a926581cc4455e [INFO] running `Command { std: "docker" "start" "-a" "434dd3f7599b80e17d93bb761e01af08e0447beb4be074cac3a926581cc4455e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "434dd3f7599b80e17d93bb761e01af08e0447beb4be074cac3a926581cc4455e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "434dd3f7599b80e17d93bb761e01af08e0447beb4be074cac3a926581cc4455e", kill_on_drop: false }` [INFO] [stdout] 434dd3f7599b80e17d93bb761e01af08e0447beb4be074cac3a926581cc4455e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b50ff5ef87b4f73dd0335fee1c22eb7c30affe7cdd18b725801eaed5db6e7ba6 [INFO] running `Command { std: "docker" "start" "-a" "b50ff5ef87b4f73dd0335fee1c22eb7c30affe7cdd18b725801eaed5db6e7ba6", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.86 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling unicode-ident v1.0.6 [INFO] [stderr] Compiling libc v0.2.158 [INFO] [stderr] Compiling prettyplease v0.2.22 [INFO] [stderr] Compiling log v0.4.17 [INFO] [stderr] Compiling bindgen v0.70.1 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling shlex v1.1.0 [INFO] [stderr] Compiling libloading v0.7.3 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling clang-sys v1.3.1 [INFO] [stderr] Compiling nom v7.1.1 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling syn v2.0.77 [INFO] [stderr] Compiling regex v1.5.5 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling librna-sys v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: librna-sys@0.3.0: pkg_config failed ( [INFO] [stderr] warning: librna-sys@0.3.0: Consider setting LIBRNA_INCLUDE_DIR/LIBRNA_LIB_DIR instead. [INFO] [stderr] warning: librna-sys@0.3.0: environment variable not found. Using default LIBRNA_INCLUDE_DIR=/usr/include [INFO] [stderr] warning: librna-sys@0.3.0: environment variable not found. Using default LIBRNA_LIB_DIR=/usr/lib [INFO] [stderr] warning: librna-sys@0.3.0: libRNA.a not found! [INFO] [stderr] warning: librna-sys@0.3.0: Fallback mode for locally building libRNA.a is not yet implemented. [INFO] [stderr] error: failed to run custom build command for `librna-sys v0.3.0 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/librna-sys-063e7ff186ed95ad/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=src/wrapper.h [INFO] [stderr] cargo:rerun-if-env-changed=LIBRNA_LIB_DIR [INFO] [stderr] cargo:rerun-if-env-changed=LIBRNA_INCLUDE_DIR [INFO] [stderr] cargo:rerun-if-env-changed=RNALIB2_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:warning=pkg_config failed ( [INFO] [stderr] pkg-config exited with status code 1 [INFO] [stderr] > PKG_CONFIG_ALLOW_SYSTEM_LIBS=1 PKG_CONFIG_ALLOW_SYSTEM_CFLAGS=1 pkg-config --static --libs --cflags RNAlib2 RNAlib2 >= 2.5.0 [INFO] [stderr] [INFO] [stderr] The system library `RNAlib2` required by crate `librna-sys` was not found. [INFO] [stderr] The file `RNAlib2.pc` needs to be installed and the PKG_CONFIG_PATH environment variable must contain its parent directory. [INFO] [stderr] The PKG_CONFIG_PATH environment variable is not set. [INFO] [stderr] [INFO] [stderr] HINT: if you have installed the library, try setting PKG_CONFIG_PATH to the directory containing `RNAlib2.pc`. [INFO] [stderr] ). [INFO] [stderr] cargo:warning=Consider setting LIBRNA_INCLUDE_DIR/LIBRNA_LIB_DIR instead. [INFO] [stderr] cargo:warning=environment variable not found. Using default LIBRNA_INCLUDE_DIR=/usr/include [INFO] [stderr] cargo:warning=environment variable not found. Using default LIBRNA_LIB_DIR=/usr/lib [INFO] [stderr] cargo:warning=libRNA.a not found! [INFO] [stderr] cargo:warning=Fallback mode for locally building libRNA.a is not yet implemented. [INFO] [stderr] cargo:rustc-link-lib=static=RNA [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] cargo:rustc-link-lib=gsl [INFO] [stderr] cargo:rustc-link-lib=mpfr [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=gmp [INFO] [stderr] cargo:include=/usr/include [INFO] [stderr] cargo:include=/usr/include/ViennaRNA [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] src/wrapper.h:9:10: fatal error: 'ViennaRNA/2Dfold.h' file not found [INFO] [stderr] [INFO] [stderr] thread 'main' (538) panicked at src/build.rs:95:10: [INFO] [stderr] Unable to generate bindings: ClangDiagnostic("src/wrapper.h:9:10: fatal error: 'ViennaRNA/2Dfold.h' file not found\n") [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5ba2d183ecc2 - std::backtrace_rs::backtrace::libunwind::trace::h62f3c6bea0fedab3 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x5ba2d183ecc2 - std::backtrace_rs::backtrace::trace_unsynchronized::hc41aaca6c0af0bde [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x5ba2d183ecc2 - std::sys::backtrace::_print_fmt::h33ac2b97007106cc [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x5ba2d183ecc2 - ::fmt::h4e0a3aeea0f9c085 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x5ba2d18501df - core::fmt::rt::Argument::fmt::h1edd6a3e00b22f10 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x5ba2d18501df - core::fmt::write::hecf68a131630c74d [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x5ba2d180f731 - std::io::default_write_fmt::haf8355dc2afbec95 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x5ba2d180f731 - std::io::Write::write_fmt::h93c9a261259c931a [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x5ba2d181a6c2 - std::sys::backtrace::BacktraceLock::print::h75160192768e5621 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x5ba2d181d78f - std::panicking::default_hook::{{closure}}::h14d82797cfb1ddcb [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x5ba2d181d5e9 - std::panicking::default_hook::h63f9bf8161c5d325 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x5ba2d181dec5 - std::panicking::panic_with_hook::h3173740e06bd0752 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x5ba2d181dcaa - std::panicking::panic_handler::{{closure}}::hbac492c61eb56a87 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:707:13 [INFO] [stderr] 13: 0x5ba2d181a809 - std::sys::backtrace::__rust_end_short_backtrace::haa3eac3df9535320 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x5ba2d180372d - __rustc[de0091b922c53d7e]::rust_begin_unwind [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x5ba2d185a0f0 - core::panicking::panic_fmt::h5138da2ef87be35b [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x5ba2d1859376 - core::result::unwrap_failed::h5d9b16b0b732a2ac [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/result.rs:1855:5 [INFO] [stderr] 17: 0x5ba2d13222b4 - core::result::Result::expect::h18ec58317d793843 [INFO] [stderr] 18: 0x5ba2d131fee5 - build_script_build::main::h215abfe770c97978 [INFO] [stderr] 19: 0x5ba2d13210e3 - core::ops::function::FnOnce::call_once::h46723e61d2fe0e79 [INFO] [stderr] 20: 0x5ba2d1320ca6 - std::sys::backtrace::__rust_begin_short_backtrace::h39e2e3d30bd17d4c [INFO] [stderr] 21: 0x5ba2d1320c89 - std::rt::lang_start::{{closure}}::h8527c10da35aadb8 [INFO] [stderr] 22: 0x5ba2d1811270 - core::ops::function::impls:: for &F>::call_once::hc7ed5622678f5124 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 23: 0x5ba2d1811270 - std::panicking::catch_unwind::do_call::hc59414a11cf2a25a [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stderr] 24: 0x5ba2d1811270 - std::panicking::catch_unwind::hff67b45e0819a036 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stderr] 25: 0x5ba2d1811270 - std::panic::catch_unwind::hec0fb0db85f7fd60 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stderr] 26: 0x5ba2d1811270 - std::rt::lang_start_internal::{{closure}}::h74bea026352620a3 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/rt.rs:175:24 [INFO] [stderr] 27: 0x5ba2d1811270 - std::panicking::catch_unwind::do_call::h931ef1bf7bdfcae2 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:590:40 [INFO] [stderr] 28: 0x5ba2d1811270 - std::panicking::catch_unwind::h3816830c825cbe04 [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panicking.rs:553:19 [INFO] [stderr] 29: 0x5ba2d1811270 - std::panic::catch_unwind::h408406c8f02ebb9d [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/panic.rs:359:14 [INFO] [stderr] 30: 0x5ba2d1811270 - std::rt::lang_start_internal::hce2b8b328837374b [INFO] [stderr] at /rustc/f8297e351a40c1439a467bbbb6879088047f50b3/library/std/src/rt.rs:171:5 [INFO] [stderr] 31: 0x5ba2d1320c71 - std::rt::lang_start::h371a7c62413895df [INFO] [stderr] 32: 0x5ba2d1323f25 - main [INFO] [stderr] 33: 0x785af4e461ca - [INFO] [stderr] 34: 0x785af4e4628b - __libc_start_main [INFO] [stderr] 35: 0x5ba2d131e415 - _start [INFO] [stderr] 36: 0x0 - [INFO] running `Command { std: "docker" "inspect" "b50ff5ef87b4f73dd0335fee1c22eb7c30affe7cdd18b725801eaed5db6e7ba6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b50ff5ef87b4f73dd0335fee1c22eb7c30affe7cdd18b725801eaed5db6e7ba6", kill_on_drop: false }` [INFO] [stdout] b50ff5ef87b4f73dd0335fee1c22eb7c30affe7cdd18b725801eaed5db6e7ba6