[INFO] cloning repository https://github.com/pharmacometric/NNCA [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/pharmacometric/NNCA" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpharmacometric%2FNNCA", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpharmacometric%2FNNCA'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ca562d63e1b963884f4f3acb5563d2d0b0a461af [INFO] testing pharmacometric/NNCA against 1.91.0 for beta-1.92-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpharmacometric%2FNNCA" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'... [INFO] [stderr] done. 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[INFO] started tweaking git repo https://github.com/pharmacometric/NNCA [INFO] finished tweaking git repo https://github.com/pharmacometric/NNCA [INFO] tweaked toml for git repo https://github.com/pharmacometric/NNCA written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/pharmacometric/NNCA on toolchain 1.91.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/pharmacometric/NNCA already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.91.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded statrs v0.16.1 [INFO] [stderr] Downloaded find-msvc-tools v0.1.0 [INFO] [stderr] Downloaded nalgebra v0.32.6 [INFO] [stderr] Downloaded cc v1.2.35 [INFO] [stderr] Downloaded simba v0.6.0 [INFO] [stderr] Downloaded nalgebra-macros v0.2.2 [INFO] [stderr] Downloaded nalgebra v0.29.0 [INFO] [stderr] Downloaded anyhow v1.0.99 [INFO] [stderr] Downloaded winapi-util v0.1.10 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 48e3595d2a26a8ea01aeb93f6a78f0bce338db3efb8f44ff6877ad6a09098fc6 [INFO] running `Command { std: "docker" "start" "-a" "48e3595d2a26a8ea01aeb93f6a78f0bce338db3efb8f44ff6877ad6a09098fc6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "48e3595d2a26a8ea01aeb93f6a78f0bce338db3efb8f44ff6877ad6a09098fc6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "48e3595d2a26a8ea01aeb93f6a78f0bce338db3efb8f44ff6877ad6a09098fc6", kill_on_drop: false }` [INFO] [stdout] 48e3595d2a26a8ea01aeb93f6a78f0bce338db3efb8f44ff6877ad6a09098fc6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 26a50e27ed9f03ea9511c748938fe823548677f3976aadf9373d7fbe8c9d76f6 [INFO] running `Command { std: "docker" "start" "-a" "26a50e27ed9f03ea9511c748938fe823548677f3976aadf9373d7fbe8c9d76f6", kill_on_drop: false }` [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling libc v0.2.175 [INFO] [stderr] Compiling bytemuck v1.23.2 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling regex-syntax v0.8.6 [INFO] [stderr] Compiling anyhow v1.0.99 [INFO] [stderr] Compiling serde_json v1.0.143 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling humantime v2.2.0 [INFO] [stderr] Compiling iana-time-zone v0.1.63 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling is-terminal v0.4.16 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling regex-automata v0.4.10 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling simba v0.8.1 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling regex v1.11.2 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling clap_derive v4.5.47 [INFO] [stderr] Compiling env_logger v0.10.2 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling clap v4.5.47 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling nalgebra v0.32.6 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling chrono v0.4.41 [INFO] [stderr] Compiling statrs v0.16.1 [INFO] [stderr] Compiling nca-analysis v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `DMatrix` and `DVector` [INFO] [stdout] --> src/parameters.rs:2:16 [INFO] [stdout] | [INFO] [stdout] 2 | use nalgebra::{DMatrix, DVector}; [INFO] [stdout] | ^^^^^^^ ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `statrs::statistics::Statistics` [INFO] [stdout] --> src/parameters.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use statrs::statistics::Statistics; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/stratification.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `stratum_key` [INFO] [stdout] --> src/output.rs:202:14 [INFO] [stdout] | [INFO] [stdout] 202 | for (stratum_key, stratum_results) in stratified_results { [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_stratum_key` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `key` [INFO] [stdout] --> src/output.rs:279:14 [INFO] [stdout] | [INFO] [stdout] 279 | for (key, regression) in &covariate_analysis.regression_analysis { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_key` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `stratum_key` [INFO] [stdout] --> src/main.rs:242:14 [INFO] [stdout] | [INFO] [stdout] 242 | for (stratum_key, stratum_results) in &results.stratified_results { [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_stratum_key` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 41.36s [INFO] running `Command { std: "docker" "inspect" "26a50e27ed9f03ea9511c748938fe823548677f3976aadf9373d7fbe8c9d76f6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "26a50e27ed9f03ea9511c748938fe823548677f3976aadf9373d7fbe8c9d76f6", kill_on_drop: false }` [INFO] [stdout] 26a50e27ed9f03ea9511c748938fe823548677f3976aadf9373d7fbe8c9d76f6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+1.91.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6d8c79d083f82660d45e9de176d7ed13c34a16b9aaeaa45e75d4f1091835213b [INFO] running `Command { std: "docker" "start" "-a" "6d8c79d083f82660d45e9de176d7ed13c34a16b9aaeaa45e75d4f1091835213b", kill_on_drop: false }` [INFO] [stdout] warning: unused imports: `DMatrix` and `DVector` [INFO] [stdout] --> src/parameters.rs:2:16 [INFO] [stdout] | [INFO] [stdout] 2 | use nalgebra::{DMatrix, DVector}; [INFO] [stdout] | ^^^^^^^ ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `statrs::statistics::Statistics` [INFO] [stdout] --> src/parameters.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use statrs::statistics::Statistics; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/stratification.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling nca-analysis v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `stratum_key` [INFO] [stdout] --> src/output.rs:202:14 [INFO] [stdout] | [INFO] [stdout] 202 | for (stratum_key, stratum_results) in stratified_results { [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_stratum_key` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `key` [INFO] [stdout] --> src/output.rs:279:14 [INFO] [stdout] | [INFO] [stdout] 279 | for (key, regression) in &covariate_analysis.regression_analysis { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_key` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `stratum_key` [INFO] [stdout] --> src/main.rs:242:14 [INFO] [stdout] | [INFO] [stdout] 242 | for (stratum_key, stratum_results) in &results.stratified_results { [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_stratum_key` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `tempfile` [INFO] [stdout] --> tests/integration_tests.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use tempfile::TempDir; [INFO] [stdout] | ^^^^^^^^ use of unresolved module or unlinked crate `tempfile` [INFO] [stdout] | [INFO] [stdout] = help: if you wanted to use a crate named `tempfile`, use `cargo add tempfile` to add it to your `Cargo.toml` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::PathBuf` [INFO] [stdout] --> tests/integration_tests.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use std::path::PathBuf; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `tempfile` [INFO] [stdout] --> src/main.rs:271:9 [INFO] [stdout] | [INFO] [stdout] 271 | use tempfile::TempDir; [INFO] [stdout] | ^^^^^^^^ use of unresolved module or unlinked crate `tempfile` [INFO] [stdout] | [INFO] [stdout] = help: if you wanted to use a crate named `tempfile`, use `cargo add tempfile` to add it to your `Cargo.toml` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `stratum_key` [INFO] [stdout] --> src/main.rs:242:14 [INFO] [stdout] | [INFO] [stdout] 242 | for (stratum_key, stratum_results) in &results.stratified_results { [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_stratum_key` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stderr] error: could not compile `nca-analysis` (bin "nca-analysis" test) due to 1 previous error; 1 warning emitted [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] error[E0063]: missing fields `dose_normalization`, `perform_covariate_analysis` and `stratification` in initializer of `nca_analysis::AnalysisConfig` [INFO] [stdout] --> tests/integration_tests.rs:26:18 [INFO] [stdout] | [INFO] [stdout] 26 | let config = AnalysisConfig { [INFO] [stdout] | ^^^^^^^^^^^^^^ missing `dose_normalization`, `perform_covariate_analysis` and `stratification` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0063]: missing fields `dose_normalization`, `perform_covariate_analysis` and `stratification` in initializer of `nca_analysis::AnalysisConfig` [INFO] [stdout] --> tests/integration_tests.rs:97:18 [INFO] [stdout] | [INFO] [stdout] 97 | let config = AnalysisConfig { [INFO] [stdout] | ^^^^^^^^^^^^^^ missing `dose_normalization`, `perform_covariate_analysis` and `stratification` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0063, E0432. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0063`. [INFO] [stdout] [INFO] [stderr] error: could not compile `nca-analysis` (test "integration_tests") due to 3 previous errors; 1 warning emitted [INFO] [stdout] warning: unused imports: `DMatrix` and `DVector` [INFO] [stdout] --> src/parameters.rs:2:16 [INFO] [stdout] | [INFO] [stdout] 2 | use nalgebra::{DMatrix, DVector}; [INFO] [stdout] | ^^^^^^^ ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `statrs::statistics::Statistics` [INFO] [stdout] --> src/parameters.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use statrs::statistics::Statistics; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/stratification.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `stratum_key` [INFO] [stdout] --> src/output.rs:202:14 [INFO] [stdout] | [INFO] [stdout] 202 | for (stratum_key, stratum_results) in stratified_results { [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_stratum_key` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `key` [INFO] [stdout] --> src/output.rs:279:14 [INFO] [stdout] | [INFO] [stdout] 279 | for (key, regression) in &covariate_analysis.regression_analysis { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_key` [INFO] [stdout] [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "6d8c79d083f82660d45e9de176d7ed13c34a16b9aaeaa45e75d4f1091835213b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6d8c79d083f82660d45e9de176d7ed13c34a16b9aaeaa45e75d4f1091835213b", kill_on_drop: false }` [INFO] [stdout] 6d8c79d083f82660d45e9de176d7ed13c34a16b9aaeaa45e75d4f1091835213b