[INFO] fetching crate deepbiop-core 0.1.15...
[INFO] testing deepbiop-core-0.1.15 against 1.90.0 for beta-1.91-3
[INFO] extracting crate deepbiop-core 0.1.15 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate deepbiop-core 0.1.15
[INFO] finished tweaking crates.io crate deepbiop-core 0.1.15
[INFO] tweaked toml for crates.io crate deepbiop-core 0.1.15 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-core 0.1.15 on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-core 0.1.15 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "-a" "b03a79956763ddb42b607b11bb9af857b4a00f53a1ed430e5fe8759588b08067", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b03a79956763ddb42b607b11bb9af857b4a00f53a1ed430e5fe8759588b08067", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b03a79956763ddb42b607b11bb9af857b4a00f53a1ed430e5fe8759588b08067", kill_on_drop: false }`
[INFO] [stdout] b03a79956763ddb42b607b11bb9af857b4a00f53a1ed430e5fe8759588b08067
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8a1c802389cbdac8cd4d3268b3f2beeadd7bdfb3d6d3de9d1fe13a1d4c8635cb
[INFO] running `Command { std: "docker" "start" "-a" "8a1c802389cbdac8cd4d3268b3f2beeadd7bdfb3d6d3de9d1fe13a1d4c8635cb", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "inspect" "8a1c802389cbdac8cd4d3268b3f2beeadd7bdfb3d6d3de9d1fe13a1d4c8635cb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8a1c802389cbdac8cd4d3268b3f2beeadd7bdfb3d6d3de9d1fe13a1d4c8635cb", kill_on_drop: false }`
[INFO] [stdout] 8a1c802389cbdac8cd4d3268b3f2beeadd7bdfb3d6d3de9d1fe13a1d4c8635cb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 75117aa971cea74043a2afd7719e9acbce7898614bc7f93a181cb0cec4304226
[INFO] running `Command { std: "docker" "start" "-a" "75117aa971cea74043a2afd7719e9acbce7898614bc7f93a181cb0cec4304226", kill_on_drop: false }`
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[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling linux-raw-sys v0.4.15
[INFO] [stderr]    Compiling petgraph v0.6.5
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling multimap v0.10.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling ordered-float v4.6.0
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling fastrand v2.3.0
[INFO] [stderr]    Compiling wide v0.7.32
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling bstr v1.11.3
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling simba v0.8.1
[INFO] [stderr]    Compiling tempfile v3.15.0
[INFO] [stderr]    Compiling arrow-csv v54.0.0
[INFO] [stderr]    Compiling arrow-string v54.0.0
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling noodles-core v0.15.0
[INFO] [stderr]    Compiling noodles-fastq v0.16.0
[INFO] [stderr]    Compiling noodles-csi v0.41.0
[INFO] [stderr]    Compiling noodles-fasta v0.46.0
[INFO] [stderr]    Compiling noodles-sam v0.68.0
[INFO] [stderr]    Compiling numpy v0.23.0
[INFO] [stderr]    Compiling arrow v54.0.0
[INFO] [stderr]    Compiling pyo3-stub-gen v0.6.2
[INFO] [stderr]    Compiling noodles-bam v0.72.0
[INFO] [stderr]    Compiling noodles v0.87.0
[INFO] [stderr]    Compiling deepbiop-core v0.1.15 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling nalgebra v0.32.6
[INFO] [stderr]    Compiling statrs v0.17.1
[INFO] [stderr]    Compiling bio v2.0.3
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 40.28s
[INFO] running `Command { std: "docker" "inspect" "75117aa971cea74043a2afd7719e9acbce7898614bc7f93a181cb0cec4304226", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "75117aa971cea74043a2afd7719e9acbce7898614bc7f93a181cb0cec4304226", kill_on_drop: false }`
[INFO] [stdout] 75117aa971cea74043a2afd7719e9acbce7898614bc7f93a181cb0cec4304226
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 26134acafbcf4a5c8932db7e8f7d6b0eaf687fdbc5e733fd0604968f24f6cd1d
[INFO] running `Command { std: "docker" "start" "-a" "26134acafbcf4a5c8932db7e8f7d6b0eaf687fdbc5e733fd0604968f24f6cd1d", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.39s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/deepbiop_core-ab7d2a22f4615ae7)
[INFO] [stdout] 
[INFO] [stdout] running 12 tests
[INFO] [stdout] test kmer::tests::test_generate_kmers ... ok
[INFO] [stdout] test kmer::tests::test_to_original_target_region ... ok
[INFO] [stdout] test kmer::tests::test_update_target_region ... ok
[INFO] [stdout] test kmer::tests::test_generate_kmers_table_empty_base ... ok
[INFO] [stdout] test kmer::tests::test_seq_to_kmers ... ok
[INFO] [stdout] test kmer::tests::test_seq_to_kmers_and_offset_non_overlap ... ok
[INFO] [stdout] test kmer::tests::test_construct_seq_from_kmers ... ok
[INFO] [stdout] test kmer::tests::test_update_target_region_invalid_start_greater_than_end ... ok
[INFO] [stdout] test kmer::tests::test_update_target_region_valid ... ok
[INFO] [stdout] test kmer::tests::test_update_target_region_invalid_end_greater_than_seq_len ... ok
[INFO] [stdout] test kmer::tests::test_seq_to_kmers_and_offset_overlap ... ok
[INFO] [stdout] test kmer::tests::test_generate_kmers_table ... ok
[INFO] [stderr]    Doc-tests deepbiop_core
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test src/kmer.rs - kmer::seq_to_kmers (line 171) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::to_original_target_region (line 61) ... ok
[INFO] [stdout] test src/seq.rs - seq::reverse_complement (line 40) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::seq_to_kmers_and_offset (line 275) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::generate_kmers (line 372) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::kmers_to_seq (line 210) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::generate_kmers_table (line 340) ... ok
[INFO] [stdout] test src/kmer.rs - kmer::to_kmer_target_region (line 108) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.20s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "26134acafbcf4a5c8932db7e8f7d6b0eaf687fdbc5e733fd0604968f24f6cd1d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "26134acafbcf4a5c8932db7e8f7d6b0eaf687fdbc5e733fd0604968f24f6cd1d", kill_on_drop: false }`
[INFO] [stdout] 26134acafbcf4a5c8932db7e8f7d6b0eaf687fdbc5e733fd0604968f24f6cd1d
