[INFO] cloning repository https://github.com/rmhubley/BLAST_gapalign
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/rmhubley/BLAST_gapalign" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frmhubley%2FBLAST_gapalign", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frmhubley%2FBLAST_gapalign'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8beb37fa8be0666f90cb1470698728022d16bf98
[INFO] testing rmhubley/BLAST_gapalign against beta-2025-09-21 for beta-1.91-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frmhubley%2FBLAST_gapalign" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/rmhubley/BLAST_gapalign
[INFO] finished tweaking git repo https://github.com/rmhubley/BLAST_gapalign
[INFO] tweaked toml for git repo https://github.com/rmhubley/BLAST_gapalign written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/rmhubley/BLAST_gapalign on toolchain beta-2025-09-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/rmhubley/BLAST_gapalign already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 26adf2e735c20b8591fbf8499b2e5e4e5edf306afd2d51523e317b8800c50687
[INFO] running `Command { std: "docker" "start" "-a" "26adf2e735c20b8591fbf8499b2e5e4e5edf306afd2d51523e317b8800c50687", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "26adf2e735c20b8591fbf8499b2e5e4e5edf306afd2d51523e317b8800c50687", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "26adf2e735c20b8591fbf8499b2e5e4e5edf306afd2d51523e317b8800c50687", kill_on_drop: false }`
[INFO] [stdout] 26adf2e735c20b8591fbf8499b2e5e4e5edf306afd2d51523e317b8800c50687
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0c3715b4bde2368517581a5e4fc867a1b0a054df5ba7d6961166d525c617ef64
[INFO] running `Command { std: "docker" "start" "-a" "0c3715b4bde2368517581a5e4fc867a1b0a054df5ba7d6961166d525c617ef64", kill_on_drop: false }`
[INFO] [stderr]    Compiling blast_gapalign v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.44s
[INFO] running `Command { std: "docker" "inspect" "0c3715b4bde2368517581a5e4fc867a1b0a054df5ba7d6961166d525c617ef64", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0c3715b4bde2368517581a5e4fc867a1b0a054df5ba7d6961166d525c617ef64", kill_on_drop: false }`
[INFO] [stdout] 0c3715b4bde2368517581a5e4fc867a1b0a054df5ba7d6961166d525c617ef64
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c7f0e0e60f74fb00204219e35e8be587743eaa63205e3930313a09410af98550
[INFO] running `Command { std: "docker" "start" "-a" "c7f0e0e60f74fb00204219e35e8be587743eaa63205e3930313a09410af98550", kill_on_drop: false }`
[INFO] [stderr]    Compiling blast_gapalign v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.54s
[INFO] running `Command { std: "docker" "inspect" "c7f0e0e60f74fb00204219e35e8be587743eaa63205e3930313a09410af98550", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c7f0e0e60f74fb00204219e35e8be587743eaa63205e3930313a09410af98550", kill_on_drop: false }`
[INFO] [stdout] c7f0e0e60f74fb00204219e35e8be587743eaa63205e3930313a09410af98550
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] e1512a526a12cd61b7b2f0f6ef23397b92d3c48959ec2d0e6449dc1b98844b14
[INFO] running `Command { std: "docker" "start" "-a" "e1512a526a12cd61b7b2f0f6ef23397b92d3c48959ec2d0e6449dc1b98844b14", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.03s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/blast_gapalign-c05383079afcdc93)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test tests::test_align_ex_complex_left_aligned ... ok
[INFO] [stdout] test tests::test_align_ex_extended_gap ... ok
[INFO] [stdout] test tests::test_align_ex_alu3_sub ... ok
[INFO] [stdout] test tests::test_align_ex_alu1 ... ok
[INFO] [stdout] test tests::test_align_ex_left_right_extension ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests blast_gapalign
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "e1512a526a12cd61b7b2f0f6ef23397b92d3c48959ec2d0e6449dc1b98844b14", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e1512a526a12cd61b7b2f0f6ef23397b92d3c48959ec2d0e6449dc1b98844b14", kill_on_drop: false }`
[INFO] [stdout] e1512a526a12cd61b7b2f0f6ef23397b92d3c48959ec2d0e6449dc1b98844b14
