[INFO] fetching crate rna-algos 0.1.37...
[INFO] testing rna-algos-0.1.37 against beta-2025-09-21 for beta-1.91-3
[INFO] extracting crate rna-algos 0.1.37 into /workspace/builds/worker-0-tc2/source
[INFO] started tweaking crates.io crate rna-algos 0.1.37
[INFO] finished tweaking crates.io crate rna-algos 0.1.37
[INFO] tweaked toml for crates.io crate rna-algos 0.1.37 written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate rna-algos 0.1.37 on toolchain beta-2025-09-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate rna-algos 0.1.37 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 47018818eb98997769269593a9b90757c5f94236dfc3f67a6d6117caaaa5ac18
[INFO] running `Command { std: "docker" "start" "-a" "47018818eb98997769269593a9b90757c5f94236dfc3f67a6d6117caaaa5ac18", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "47018818eb98997769269593a9b90757c5f94236dfc3f67a6d6117caaaa5ac18", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "47018818eb98997769269593a9b90757c5f94236dfc3f67a6d6117caaaa5ac18", kill_on_drop: false }`
[INFO] [stdout] 47018818eb98997769269593a9b90757c5f94236dfc3f67a6d6117caaaa5ac18
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 88497afdffd0955f2b840f14f1389815042d6cfedf47579a138f88ac9851d439
[INFO] running `Command { std: "docker" "start" "-a" "88497afdffd0955f2b840f14f1389815042d6cfedf47579a138f88ac9851d439", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] [stderr]    Compiling proc-macro2 v1.0.50
[INFO] [stderr]    Compiling syn v1.0.107
[INFO] [stderr]    Compiling libm v0.2.6
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling libc v0.2.139
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling serde v1.0.152
[INFO] [stderr]    Compiling paste v1.0.11
[INFO] [stderr]    Compiling bytemuck v1.13.0
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustversion v1.0.11
[INFO] [stderr]    Compiling matrixmultiply v0.3.2
[INFO] [stderr]    Compiling safe_arch v0.6.0
[INFO] [stderr]    Compiling quote v1.0.23
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling wide v0.7.5
[INFO] [stderr]    Compiling num-bigint v0.3.3
[INFO] [stderr]    Compiling indexmap v1.9.2
[INFO] [stderr]    Compiling getrandom v0.2.8
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling thiserror v1.0.38
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling aho-corasick v0.7.20
[INFO] [stderr]    Compiling ahash v0.8.3
[INFO] [stderr]    Compiling num-iter v0.1.43
[INFO] [stderr]    Compiling num-rational v0.3.2
[INFO] [stderr]    Compiling regex-syntax v0.6.28
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling num-complex v0.4.3
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling anyhow v1.0.68
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling simba v0.6.0
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling unicode-width v0.1.10
[INFO] [stderr]    Compiling either v1.8.1
[INFO] [stderr]    Compiling fixedbitset v0.4.2
[INFO] [stderr]    Compiling once_cell v1.17.0
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling ryu v1.0.12
[INFO] [stderr]    Compiling petgraph v0.6.2
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling getopts v0.2.21
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling regex v1.7.1
[INFO] [stderr]    Compiling ndarray v0.15.6
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling num-complex v0.3.1
[INFO] [stderr]    Compiling ordered-float v3.4.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bytecount v0.6.3
[INFO] [stderr]    Compiling strum v0.24.1
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling rna-ss-params v0.1.24
[INFO] [stderr]    Compiling num v0.3.1
[INFO] [stderr]    Compiling hashbrown v0.13.2
[INFO] [stderr]    Compiling num_cpus v1.15.0
[INFO] [stderr]    Compiling scoped_threadpool v0.1.9
[INFO] [stderr]    Compiling serde_derive v1.0.152
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.38
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling enum-map v1.1.1
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]    Compiling bio-types v0.13.0
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.1.0
[INFO] [stderr]    Compiling rna-algos v0.1.37 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]   --> src/utils.rs:19:9
[INFO] [stdout]    |
[INFO] [stdout] 19 | pub use std::io::prelude::*;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 39s
[INFO] running `Command { std: "docker" "inspect" "88497afdffd0955f2b840f14f1389815042d6cfedf47579a138f88ac9851d439", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "88497afdffd0955f2b840f14f1389815042d6cfedf47579a138f88ac9851d439", kill_on_drop: false }`
[INFO] [stdout] 88497afdffd0955f2b840f14f1389815042d6cfedf47579a138f88ac9851d439
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 858d0d5f1a5f1e676cec1d2e150036932cdfc7c8ce248d96a83c028e0acb831b
[INFO] running `Command { std: "docker" "start" "-a" "858d0d5f1a5f1e676cec1d2e150036932cdfc7c8ce248d96a83c028e0acb831b", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] [stderr]    Compiling crossbeam-utils v0.8.14
[INFO] [stderr]    Compiling memoffset v0.7.1
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.13
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling serde_json v1.0.91
[INFO] [stderr]    Compiling rayon-core v1.10.2
[INFO] [stderr]    Compiling itoa v1.0.5
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]   --> src/utils.rs:19:9
[INFO] [stdout]    |
[INFO] [stdout] 19 | pub use std::io::prelude::*;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling plotters-backend v0.3.4
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling half v1.8.2
[INFO] [stderr]    Compiling cast v0.3.0
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling walkdir v2.3.2
[INFO] [stderr]    Compiling criterion-plot v0.4.5
[INFO] [stderr]    Compiling oorandom v11.1.3
[INFO] [stderr]    Compiling crossbeam-channel v0.5.6
[INFO] [stderr]    Compiling plotters-svg v0.3.3
[INFO] [stderr]    Compiling serde_cbor v0.11.2
[INFO] [stderr]    Compiling plotters v0.3.4
[INFO] [stderr]    Compiling crossbeam-deque v0.8.2
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling rayon v1.6.1
[INFO] [stderr]    Compiling criterion v0.3.6
[INFO] [stderr]    Compiling rna-algos v0.1.37 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]   --> src/utils.rs:19:9
[INFO] [stdout]    |
[INFO] [stdout] 19 | pub use std::io::prelude::*;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 27.43s
[INFO] running `Command { std: "docker" "inspect" "858d0d5f1a5f1e676cec1d2e150036932cdfc7c8ce248d96a83c028e0acb831b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "858d0d5f1a5f1e676cec1d2e150036932cdfc7c8ce248d96a83c028e0acb831b", kill_on_drop: false }`
[INFO] [stdout] 858d0d5f1a5f1e676cec1d2e150036932cdfc7c8ce248d96a83c028e0acb831b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] d38fdf779520ac0d35b9ed57dead42883afd9c498f9e7489ae6578a5d7d9a79b
[INFO] running `Command { std: "docker" "start" "-a" "d38fdf779520ac0d35b9ed57dead42883afd9c498f9e7489ae6578a5d7d9a79b", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] [stdout] 
[INFO] [stderr] warning: unused import: `std::io::prelude::*`
[INFO] [stdout] running 0 tests
[INFO] [stderr]   --> src/utils.rs:19:9
[INFO] [stdout] 
[INFO] [stderr]    |
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stderr] 19 | pub use std::io::prelude::*;
[INFO] [stdout] 
[INFO] [stderr]    |         ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stderr]    |
[INFO] [stdout] running 0 tests
[INFO] [stderr]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stderr] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stderr] warning: `rna-algos` (lib) generated 1 warning (run `cargo fix --lib -p rna-algos` to apply 1 suggestion)
[INFO] [stdout] 
[INFO] [stderr] warning: `rna-algos` (lib test) generated 1 warning (1 duplicate)
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.21s
[INFO] [stdout] running 0 tests
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rna_algos-ae6949ce42856707)
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/centroid_fold.rs (/opt/rustwide/target/debug/deps/centroid_fold-3389241d2f88dc11)
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stderr]      Running unittests src/bin/durbin_algo.rs (/opt/rustwide/target/debug/deps/durbin_algo-debe161cb4de1817)
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/generate_align_scores.rs (/opt/rustwide/target/debug/deps/generate_align_scores-ff8d26cc2cec916c)
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/mccaskill_algo.rs (/opt/rustwide/target/debug/deps/mccaskill_algo-f372b2cbed42988e)
[INFO] [stdout] running 0 tests
[INFO] [stderr]      Running tests/tests.rs (/opt/rustwide/target/debug/deps/tests-8866ea5d6a6544b7)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stderr] 
[INFO] [stderr] thread '<unknown>' (36) has overflowed its stack
[INFO] [stderr] fatal runtime error: stack overflow, aborting
[INFO] [stderr] error: test failed, to rerun pass `--test tests`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/deps/tests-8866ea5d6a6544b7` (signal: 6, SIGABRT: process abort signal)
[INFO] running `Command { std: "docker" "inspect" "d38fdf779520ac0d35b9ed57dead42883afd9c498f9e7489ae6578a5d7d9a79b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d38fdf779520ac0d35b9ed57dead42883afd9c498f9e7489ae6578a5d7d9a79b", kill_on_drop: false }`
[INFO] [stdout] d38fdf779520ac0d35b9ed57dead42883afd9c498f9e7489ae6578a5d7d9a79b
