[INFO] fetching crate microBioRust-seqmetrics 0.1.2...
[INFO] testing microBioRust-seqmetrics-0.1.2 against 1.90.0 for beta-1.91-3
[INFO] extracting crate microBioRust-seqmetrics 0.1.2 into /workspace/builds/worker-6-tc1/source
[INFO] started tweaking crates.io crate microBioRust-seqmetrics 0.1.2
[INFO] finished tweaking crates.io crate microBioRust-seqmetrics 0.1.2
[INFO] tweaked toml for crates.io crate microBioRust-seqmetrics 0.1.2 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate microBioRust-seqmetrics 0.1.2 on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate microBioRust-seqmetrics 0.1.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded protein-translate v0.2.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded microBioRust v0.1.2
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded nalgebra v0.33.2
[INFO] [stderr]   Downloaded petgraph v0.8.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 14b8c9e369affca88492e057ae169d4980999ebe6371440eda05fbb770397443
[INFO] running `Command { std: "docker" "start" "-a" "14b8c9e369affca88492e057ae169d4980999ebe6371440eda05fbb770397443", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "14b8c9e369affca88492e057ae169d4980999ebe6371440eda05fbb770397443", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "14b8c9e369affca88492e057ae169d4980999ebe6371440eda05fbb770397443", kill_on_drop: false }`
[INFO] [stdout] 14b8c9e369affca88492e057ae169d4980999ebe6371440eda05fbb770397443
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 009732140eb2723a2a7bce7cdb6236192adc5c5bc98ba4bd58fda4a6163da292
[INFO] running `Command { std: "docker" "start" "-a" "009732140eb2723a2a7bce7cdb6236192adc5c5bc98ba4bd58fda4a6163da292", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling bytemuck v1.23.1
[INFO] [stderr]    Compiling rustversion v1.0.21
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling allocator-api2 v0.2.21
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling foldhash v0.1.5
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling anyhow v1.0.98
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling parking_lot_core v0.9.11
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling hashbrown v0.15.4
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling parking_lot v0.12.4
[INFO] [stderr]    Compiling signal-hook-registry v1.4.5
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling chrono v0.4.41
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling socket2 v0.5.10
[INFO] [stderr]    Compiling mio v1.0.4
[INFO] [stderr]    Compiling protein-translate v0.2.0
[INFO] [stderr]    Compiling indexmap v2.9.0
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling petgraph v0.8.2
[INFO] [stderr]    Compiling simba v0.9.0
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling clap_derive v4.5.40
[INFO] [stderr]    Compiling tokio-macros v2.5.0
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling tokio v1.45.1
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling thiserror v2.0.12
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling clap v4.5.40
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling microBioRust v0.1.2
[INFO] [stderr]    Compiling microBioRust-seqmetrics v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 47.84s
[INFO] running `Command { std: "docker" "inspect" "009732140eb2723a2a7bce7cdb6236192adc5c5bc98ba4bd58fda4a6163da292", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "009732140eb2723a2a7bce7cdb6236192adc5c5bc98ba4bd58fda4a6163da292", kill_on_drop: false }`
[INFO] [stdout] 009732140eb2723a2a7bce7cdb6236192adc5c5bc98ba4bd58fda4a6163da292
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 284ff9549989f87e5fe03789f1be7fd588140ebc8bab52228f70768d644b50b8
[INFO] running `Command { std: "docker" "start" "-a" "284ff9549989f87e5fe03789f1be7fd588140ebc8bab52228f70768d644b50b8", kill_on_drop: false }`
[INFO] [stderr]    Compiling microBioRust-seqmetrics v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 2.05s
[INFO] running `Command { std: "docker" "inspect" "284ff9549989f87e5fe03789f1be7fd588140ebc8bab52228f70768d644b50b8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "284ff9549989f87e5fe03789f1be7fd588140ebc8bab52228f70768d644b50b8", kill_on_drop: false }`
[INFO] [stdout] 284ff9549989f87e5fe03789f1be7fd588140ebc8bab52228f70768d644b50b8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 5c94368a4f80644fba4b1d18d028b7fa74366379dc04d4eb3b7813f5cb4921ec
[INFO] running `Command { std: "docker" "start" "-a" "5c94368a4f80644fba4b1d18d028b7fa74366379dc04d4eb3b7813f5cb4921ec", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.17s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/microBioRust_seqmetrics-96d62c7717aef62d)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test metrics::tests::main ... ok
[INFO] [stdout] test metrics::tests::count_aminos ... ok
[INFO] [stdout] test metrics::tests::collect_molecular_weight ... ok
[INFO] [stdout] test metrics::tests::suggest_transmembrane_domains ... ok
[INFO] [stdout] test metrics::tests::aromaticity ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests microBioRust_seqmetrics
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test src/metrics.rs - metrics (line 147) ... ok
[INFO] [stdout] test src/metrics.rs - metrics (line 104) ... ok
[INFO] [stdout] test src/metrics.rs - metrics (line 59) ... ok
[INFO] [stdout] test src/metrics.rs - metrics (line 8) ... ok
[INFO] [stdout] test src/metrics.rs - metrics (line 197) ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/metrics.rs - metrics (line 197) stdout ----
[INFO] [stdout] Test executable failed (exit status: 1).
[INFO] [stdout] 
[INFO] [stdout] stdout:
[INFO] [stdout] gathering records
[INFO] [stdout] gathered ids
[INFO] [stdout] all sequences are the same length, proceeding
[INFO] [stdout] 
[INFO] [stdout] stderr:
[INFO] [stdout] Error: Read-only file system (os error 30)
[INFO] [stdout] 
[INFO] [stdout] Stack backtrace:
[INFO] [stdout]    0: anyhow::error::<impl core::convert::From<E> for anyhow::Error>::from
[INFO] [stdout]    1: <core::result::Result<T,F> as core::ops::try_trait::FromResidual<core::result::Result<core::convert::Infallible,E>>>::from_residual
[INFO] [stdout]    2: microBioRust_seqmetrics::write_dst_csv::write_distances_csv::{{closure}}
[INFO] [stdout]    3: rust_out::main::{{closure}}
[INFO] [stdout]    4: tokio::runtime::park::CachedParkThread::block_on::{{closure}}
[INFO] [stdout]    5: tokio::runtime::park::CachedParkThread::block_on
[INFO] [stdout]    6: tokio::runtime::context::blocking::BlockingRegionGuard::block_on
[INFO] [stdout]    7: tokio::runtime::scheduler::multi_thread::MultiThread::block_on::{{closure}}
[INFO] [stdout]    8: tokio::runtime::context::runtime::enter_runtime
[INFO] [stdout]    9: tokio::runtime::scheduler::multi_thread::MultiThread::block_on
[INFO] [stdout]   10: tokio::runtime::runtime::Runtime::block_on_inner
[INFO] [stdout]   11: tokio::runtime::runtime::Runtime::block_on
[INFO] [stdout]   12: rust_out::main
[INFO] [stdout]   13: core::ops::function::FnOnce::call_once
[INFO] [stdout]   14: std::sys::backtrace::__rust_begin_short_backtrace
[INFO] [stdout]   15: std::rt::lang_start::{{closure}}
[INFO] [stdout]   16: core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once
[INFO] [stdout]              at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:290:21
[INFO] [stdout]   17: std::panicking::catch_unwind::do_call
[INFO] [stdout]              at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:589:40
[INFO] [stdout]   18: std::panicking::catch_unwind
[INFO] [stdout]              at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:552:19
[INFO] [stdout]   19: std::panic::catch_unwind
[INFO] [stdout]              at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panic.rs:359:14
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] [stdout]   20: std::rt::lang_start_internal::{{closure}}
[INFO] [stdout]              at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/rt.rs:175:24
[INFO] [stdout]   21: std::panicking::catch_unwind::do_call
[INFO] [stdout]              at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:589:40
[INFO] [stdout]   22: std::panicking::catch_unwind
[INFO] [stdout]              at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:552:19
[INFO] [stdout]   23: std::panic::catch_unwind
[INFO] [stdout]              at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panic.rs:359:14
[INFO] [stdout]   24: std::rt::lang_start_internal
[INFO] [stdout]              at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/rt.rs:171:5
[INFO] [stdout]   25: std::rt::lang_start
[INFO] [stdout]   26: main
[INFO] [stdout]   27: <unknown>
[INFO] [stdout]   28: __libc_start_main
[INFO] [stdout]   29: _start
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/metrics.rs - metrics (line 197)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 4 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.50s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "5c94368a4f80644fba4b1d18d028b7fa74366379dc04d4eb3b7813f5cb4921ec", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5c94368a4f80644fba4b1d18d028b7fa74366379dc04d4eb3b7813f5cb4921ec", kill_on_drop: false }`
[INFO] [stdout] 5c94368a4f80644fba4b1d18d028b7fa74366379dc04d4eb3b7813f5cb4921ec
