[INFO] fetching crate crispr_screen 0.3.21...
[INFO] testing crispr_screen-0.3.21 against beta-2025-09-21 for beta-1.91-3
[INFO] extracting crate crispr_screen 0.3.21 into /workspace/builds/worker-1-tc2/source
[INFO] started tweaking crates.io crate crispr_screen 0.3.21
[INFO] finished tweaking crates.io crate crispr_screen 0.3.21
[INFO] tweaked toml for crates.io crate crispr_screen 0.3.21 written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate crispr_screen 0.3.21 on toolchain beta-2025-09-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate crispr_screen 0.3.21 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] baa9ca4f3efebe29710be94c00b22080d76e5c5da52d1fd3a34418e1f17ec928
[INFO] running `Command { std: "docker" "start" "-a" "baa9ca4f3efebe29710be94c00b22080d76e5c5da52d1fd3a34418e1f17ec928", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "baa9ca4f3efebe29710be94c00b22080d76e5c5da52d1fd3a34418e1f17ec928", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "baa9ca4f3efebe29710be94c00b22080d76e5c5da52d1fd3a34418e1f17ec928", kill_on_drop: false }`
[INFO] [stdout] baa9ca4f3efebe29710be94c00b22080d76e5c5da52d1fd3a34418e1f17ec928
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ccb9637704b76f75f21a2c8b60ca7a80c30e29eff263814e6e5cd558be389b24
[INFO] running `Command { std: "docker" "start" "-a" "ccb9637704b76f75f21a2c8b60ca7a80c30e29eff263814e6e5cd558be389b24", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.15
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[INFO] [stderr]    Compiling thiserror-impl v2.0.16
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling clap_derive v4.5.47
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[INFO] [stderr]    Compiling multiversion v0.7.4
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[INFO] [stderr]    Compiling clap v4.5.48
[INFO] [stderr]    Compiling ndarray-rand v0.15.0
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[INFO] [stderr]    Compiling env_logger v0.11.8
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[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling darling_macro v0.21.3
[INFO] [stderr]    Compiling darling v0.21.3
[INFO] [stderr]    Compiling bon-macros v3.7.2
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[INFO] [stderr]    Compiling indexmap v2.11.0
[INFO] [stderr]    Compiling compact_str v0.8.1
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling simba v0.8.1
[INFO] [stderr]    Compiling ndarray-stats v0.6.0
[INFO] [stderr]    Compiling bon v3.7.2
[INFO] [stderr]    Compiling geopagg v0.3.1
[INFO] [stderr]    Compiling polars-error v0.43.1
[INFO] [stderr]    Compiling nalgebra v0.32.6
[INFO] [stderr]    Compiling polars-row v0.43.1
[INFO] [stderr]    Compiling statrs v0.17.1
[INFO] [stderr]    Compiling polars-parquet v0.43.1
[INFO] [stderr]    Compiling intc v0.3.6
[INFO] [stderr]    Compiling alpha-rra v0.3.3
[INFO] [stderr]    Compiling polars-io v0.43.1
[INFO] [stderr]    Compiling crispr_screen v0.3.21 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 35s
[INFO] running `Command { std: "docker" "inspect" "ccb9637704b76f75f21a2c8b60ca7a80c30e29eff263814e6e5cd558be389b24", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ccb9637704b76f75f21a2c8b60ca7a80c30e29eff263814e6e5cd558be389b24", kill_on_drop: false }`
[INFO] [stdout] ccb9637704b76f75f21a2c8b60ca7a80c30e29eff263814e6e5cd558be389b24
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 68cd6dcb4294698d6d10b46a57371e7cebc659c5ad2a281700297b2e702195b2
[INFO] running `Command { std: "docker" "start" "-a" "68cd6dcb4294698d6d10b46a57371e7cebc659c5ad2a281700297b2e702195b2", kill_on_drop: false }`
[INFO] [stderr]    Compiling crispr_screen v0.3.21 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 8.46s
[INFO] running `Command { std: "docker" "inspect" "68cd6dcb4294698d6d10b46a57371e7cebc659c5ad2a281700297b2e702195b2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "68cd6dcb4294698d6d10b46a57371e7cebc659c5ad2a281700297b2e702195b2", kill_on_drop: false }`
[INFO] [stdout] 68cd6dcb4294698d6d10b46a57371e7cebc659c5ad2a281700297b2e702195b2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 99f0df9af5cddcd94b188b56475b8393ddde13115c84293a38c016bfeb76cff1
[INFO] running `Command { std: "docker" "start" "-a" "99f0df9af5cddcd94b188b56475b8393ddde13115c84293a38c016bfeb76cff1", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.26s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/crispr_screen-4bc89c11b5698f1a)
[INFO] [stdout] 
[INFO] [stdout] running 70 tests
[INFO] [stdout] test aggregation::testing::test_enum ... ok
[INFO] [stdout] test aggregation::testing::test_enum_inc_string ... ok
[INFO] [stdout] test aggregation::testing::test_enum_invalid ... ok
[INFO] [stdout] test aggregation::testing::test_enum_rra_string ... ok
[INFO] [stdout] test aggregation::testing::test_enum_case_insensitive ... ok
[INFO] [stdout] test aggregation::utils::testing::test_empirical_alpha ... ok
[INFO] [stdout] test aggregation::utils::testing::test_mask_zeros ... ok
[INFO] [stdout] test aggregation::utils::testing::test_set_alpha_threshold ... ok
[INFO] [stdout] test enrich::enrichment_testing::testing::test_enrichment_test_cdf ... ok
[INFO] [stdout] test aggregation::utils::testing::test_set_alpha_threshold_no_adjust ... ok
[INFO] [stdout] test enrich::enrichment_testing::testing::test_calculate_p ... ok
[INFO] [stdout] test enrich::enrichment_testing::testing::test_calculate_r ... ok
[INFO] [stdout] test aggregation::utils::testing::test_filter_zeros ... ok
[INFO] [stdout] test aggregation::utils::testing::test_filter_zeros_all ... ok
[INFO] [stdout] test aggregation::utils::testing::test_filter_zeros_empty ... ok
[INFO] [stdout] test aggregation::utils::testing::test_select_from_mask ... ok
[INFO] [stdout] test aggregation::utils::testing::test_select_from_mask_array ... ok
[INFO] [stdout] test enrich::enrichment_testing::testing::test_enrichment_test_sf ... ok
[INFO] [stdout] test enrich::enrichment_testing::testing::test_get_nonzero_minimum ... ok
[INFO] [stdout] test enrich::enrichment_testing::testing::test_map_enrichment ... ok
[INFO] [stdout] test enrich::enrichment_testing::testing::test_select_treatments ... ok
[INFO] [stdout] test enrich::enrichment_testing::testing::test_set_zero_to_minimum_nonzero ... ok
[INFO] [stdout] test enrich::enrichment_testing::testing::test_set_nonzero_minimum ... ok
[INFO] [stdout] test enrich::results::testing::test_calculate_base_mean ... ok
[INFO] [stdout] test enrich::results::testing::test_calculate_log_fold_change ... ok
[INFO] [stdout] test enrich::results::testing::test_enrichment_result ... ok
[INFO] [stdout] test io::screenviz::testing::test_screenviz_incpvalue ... ok
[INFO] [stdout] test model::logged_ols::testing::test_min_nonzero_none ... ok
[INFO] [stdout] test enrich::results::testing::test_calculate_fdr ... ok
[INFO] [stdout] test model::logged_ols::testing::test_min_nonzero_some ... ok
[INFO] [stdout] test enrich::results::testing::test_calculate_fold_change ... ok
[INFO] [stdout] test io::screenviz::testing::test_screenviz_rra ... ok
[INFO] [stdout] test io::utils::testing::unsupported_datatypes_dataframe_to_ndarray ... ok
[INFO] [stdout] test enrich::results::testing::test_calculate_twosided ... ok
[INFO] [stdout] test io::utils::testing::mixed_type_dataframe_to_ndarray ... ok
[INFO] [stdout] test io::screenviz::testing::test_screenviz_incprod ... ok
[INFO] [stdout] test model::logged_ols::testing::test_mask_varied ... ok
[INFO] [stdout] test model::logged_ols::testing::test_mask_zscore ... ok
[INFO] [stdout] test model::logged_ols::testing::test_replace_nonzero ... ok
[INFO] [stdout] test model::math::testing::test_determinant ... ok
[INFO] [stdout] test model::logged_ols::testing::test_sorted_intersection ... ok
[INFO] [stdout] test model::math::testing::test_inverse ... ok
[INFO] [stdout] test model::sqmean::testing::test_sqmean ... ok
[INFO] [stdout] test model::ols::testing::test_ols ... ok
[INFO] [stdout] test norm::median_ratio_norm::testing::test_median_even ... ok
[INFO] [stdout] test utils::config::testing::test_correction ... ok
[INFO] [stdout] test utils::agg::testing::test_aggregate_fold_changes ... ok
[INFO] [stdout] test utils::config::testing::test_aggregation ... ok
[INFO] [stdout] test utils::config::testing::test_model_choice ... ok
[INFO] [stdout] test utils::config::testing::test_normalization ... ok
[INFO] [stdout] test utils::config::testing::test_prefix ... ok
[INFO] [stdout] test utils::filter::testing::test_filtering ... ok
[INFO] [stdout] test utils::math::testing::test_geometric_mean_unweighted ... ok
[INFO] [stdout] test utils::filter::testing::test_filtering_controls ... ok
[INFO] [stdout] test norm::median_ratio_norm::testing::test_median_error ... ok
[INFO] [stdout] test utils::logging::testing::test_logger ... ok
[INFO] [stdout] test utils::logging::testing::test_logger_quiet ... ok
[INFO] [stdout] test norm::median_ratio_norm::testing::test_median_odd ... ok
[INFO] [stdout] test utils::agg::testing::test_unique_indices ... ok
[INFO] [stdout] test aggregation::results::testing::test_aggregation_result ... ok
[INFO] [stdout] test utils::math::testing::test_geometric_mean_weighted ... ok
[INFO] [stdout] test aggregation::testing::test_enum_gene_aggregation_inc ... ok
[INFO] [stdout] test aggregation::testing::test_enum_gene_aggregation_rra ... ok
[INFO] [stdout] test enrich::enrichment_testing::testing::test_select_controls ... ok
[INFO] [stdout] test enrich::enrichment_testing::testing::test_row_median ... ok
[INFO] [stdout] test norm::total_norm::testing::test_total_normalization ... ok
[INFO] [stdout] test utils::math::testing::test_zscore ... ok
[INFO] [stdout] test norm::median_ratio_norm::testing::test_median_normalization ... ok
[INFO] [stdout] test model::ols::testing::test_ols_known_function ... ok
[INFO] [stdout] test model::wols::testing::test_wls_known_function ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 70 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 27.41s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "99f0df9af5cddcd94b188b56475b8393ddde13115c84293a38c016bfeb76cff1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "99f0df9af5cddcd94b188b56475b8393ddde13115c84293a38c016bfeb76cff1", kill_on_drop: false }`
[INFO] [stdout] 99f0df9af5cddcd94b188b56475b8393ddde13115c84293a38c016bfeb76cff1
