[INFO] cloning repository https://github.com/mbhall88/drprg
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mbhall88/drprg" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmbhall88%2Fdrprg", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmbhall88%2Fdrprg'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ef65d4a46e2a31cc268d4e5a106fbce72fb95e0e
[INFO] testing mbhall88/drprg against beta-2025-09-21 for beta-1.91-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmbhall88%2Fdrprg" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/mbhall88/drprg
[INFO] finished tweaking git repo https://github.com/mbhall88/drprg
[INFO] tweaked toml for git repo https://github.com/mbhall88/drprg written to /workspace/builds/worker-6-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/mbhall88/drprg on toolchain beta-2025-09-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/mbhall88/drprg already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 097a8d117f3f00c14ff1254f48307d1a8133fb2a523bc1a235cd0bbb3b387c3f
[INFO] running `Command { std: "docker" "start" "-a" "097a8d117f3f00c14ff1254f48307d1a8133fb2a523bc1a235cd0bbb3b387c3f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "097a8d117f3f00c14ff1254f48307d1a8133fb2a523bc1a235cd0bbb3b387c3f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "097a8d117f3f00c14ff1254f48307d1a8133fb2a523bc1a235cd0bbb3b387c3f", kill_on_drop: false }`
[INFO] [stdout] 097a8d117f3f00c14ff1254f48307d1a8133fb2a523bc1a235cd0bbb3b387c3f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 41761bc7f7b4f63b7acc7672dbdcab761fdce1c931d1edecb80ca47f32932c15
[INFO] running `Command { std: "docker" "start" "-a" "41761bc7f7b4f63b7acc7672dbdcab761fdce1c931d1edecb80ca47f32932c15", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.140
[INFO] [stderr]    Compiling proc-macro2 v1.0.56
[INFO] [stderr]    Compiling quote v1.0.26
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling bytes v1.4.0
[INFO] [stderr]    Compiling io-lifetimes v1.0.9
[INFO] [stderr]    Compiling futures-core v0.3.28
[INFO] [stderr]    Compiling tokio v1.27.0
[INFO] [stderr]    Compiling rustix v0.37.7
[INFO] [stderr]    Compiling serde v1.0.159
[INFO] [stderr]    Compiling slab v0.4.8
[INFO] [stderr]    Compiling futures-task v0.3.28
[INFO] [stderr]    Compiling linux-raw-sys v0.3.1
[INFO] [stderr]    Compiling tracing-core v0.1.30
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling openssl v0.10.49
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling futures-util v0.3.28
[INFO] [stderr]    Compiling tinyvec v1.6.0
[INFO] [stderr]    Compiling futures-sink v0.3.28
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling rustversion v1.0.12
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling futures-io v0.3.28
[INFO] [stderr]    Compiling tracing v0.1.37
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[INFO] [stderr]    Compiling futures-channel v0.3.28
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[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
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[INFO] [stderr]    Compiling serde_derive v1.0.159
[INFO] [stderr]    Compiling noodles-gff v0.6.1
[INFO] [stderr]    Compiling encoding_rs v0.8.32
[INFO] [stderr]    Compiling url v2.3.1
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[INFO] [stderr]    Compiling regex v1.7.3
[INFO] [stderr]    Compiling jobserver v0.1.26
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[INFO] [stderr]    Compiling mio v0.8.6
[INFO] [stderr]    Compiling dirs-sys-next v0.1.2
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[INFO] [stderr]    Compiling noodles-bgzf v0.12.0
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[INFO] [stderr]    Compiling term v0.7.0
[INFO] [stderr]    Compiling rayon-core v1.11.0
[INFO] [stderr]    Compiling noodles-fasta v0.11.0
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[INFO] [stderr]    Compiling openssl-src v111.25.2+1.1.1t
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[INFO] [stderr]    Compiling time v0.1.45
[INFO] [stderr]    Compiling getrandom v0.2.8
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling termcolor v1.2.0
[INFO] [stderr]    Compiling encode_unicode v1.0.0
[INFO] [stderr]    Compiling either v1.8.1
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling openssl-sys v0.9.84
[INFO] [stderr]    Compiling libz-sys v1.1.8
[INFO] [stderr]    Compiling curl-sys v0.4.61+curl-8.0.1
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling hts-sys v2.0.3
[INFO] [stderr]    Compiling base64 v0.21.0
[INFO] [stderr]    Compiling unicode-width v0.1.10
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling iana-time-zone v0.1.56
[INFO] [stderr]    Compiling rayon v1.7.0
[INFO] [stderr]    Compiling env_logger v0.9.3
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling csv v1.2.1
[INFO] [stderr]    Compiling serde_urlencoded v0.7.1
[INFO] [stderr]    Compiling toml v0.5.11
[INFO] [stderr]    Compiling chrono v0.4.24
[INFO] [stderr]    Compiling uuid v1.3.0
[INFO] [stderr]    Compiling tar v0.4.38
[INFO] [stderr]    Compiling noodles v0.24.0
[INFO] [stderr]    Compiling float-cmp v0.9.0
[INFO] [stderr]    Compiling fs_extra v1.3.0
[INFO] [stderr]    Compiling is-terminal v0.4.6
[INFO] [stderr]    Compiling anstream v0.2.6
[INFO] [stderr]    Compiling clap_builder v4.2.1
[INFO] [stderr]    Compiling prettytable-rs v0.10.0
[INFO] [stderr]    Compiling tempfile v3.5.0
[INFO] [stderr]    Compiling strum v0.24.1
[INFO] [stderr]    Compiling openssl-macros v0.1.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.40
[INFO] [stderr]    Compiling clap_derive v4.2.0
[INFO] [stderr]    Compiling tokio-util v0.7.7
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling h2 v0.3.17
[INFO] [stderr]    Compiling thiserror v1.0.40
[INFO] [stderr]    Compiling clap v4.2.1
[INFO] [stderr]    Compiling bio-types v0.13.0
[INFO] [stderr]    Compiling hyper v0.14.25
[INFO] [stderr]    Compiling native-tls v0.2.11
[INFO] [stderr]    Compiling rust-htslib v0.39.5
[INFO] [stderr]    Compiling tokio-native-tls v0.3.1
[INFO] [stderr]    Compiling hyper-tls v0.5.0
[INFO] [stderr]    Compiling reqwest v0.11.16
[INFO] [stderr]    Compiling drprg v0.1.1 (/opt/rustwide/workdir)
[INFO] [stdout] error[E0308]: mismatched types
[INFO] [stdout]    --> src/builder.rs:265:9
[INFO] [stdout]     |
[INFO] [stdout] 263 |     fn prg_index_path(&self) -> PathBuf {
[INFO] [stdout]     |                                 ------- expected `PathBuf` because of return type
[INFO] [stdout] 264 |         let ext = format!("k{}.w{}.idx", self.pandora_k, self.pandora_w);
[INFO] [stdout] 265 |         self.prg_path().add_extension(ext.as_str().as_ref())
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `PathBuf`, found `bool`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0308]: mismatched types
[INFO] [stdout]    --> src/builder.rs:271:9
[INFO] [stdout]     |
[INFO] [stdout] 270 |     fn reference_index_file(&self) -> PathBuf {
[INFO] [stdout]     |                                       ------- expected `PathBuf` because of return type
[INFO] [stdout] 271 |         self.reference_file.add_extension(".fai".as_ref())
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `PathBuf`, found `bool`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0308]: mismatched types
[INFO] [stdout]    --> src/predict.rs:364:9
[INFO] [stdout]     |
[INFO] [stdout] 363 |     fn index_vcf_index_path(&self) -> PathBuf {
[INFO] [stdout]     |                                       ------- expected `PathBuf` because of return type
[INFO] [stdout] 364 |         self.index_vcf_path().add_extension(".csi".as_ref())
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `PathBuf`, found `bool`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0308]: mismatched types
[INFO] [stdout]    --> src/predict.rs:388:9
[INFO] [stdout]     |
[INFO] [stdout] 386 |     fn predict_vcf_filename(&self) -> PathBuf {
[INFO] [stdout]     |                                       ------- expected `PathBuf` because of return type
[INFO] [stdout] 387 |         let path = PathBuf::from(self.sample_name());
[INFO] [stdout] 388 |         path.add_extension(".drprg.bcf".as_ref())
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `PathBuf`, found `bool`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0308]: mismatched types
[INFO] [stdout]    --> src/predict.rs:397:9
[INFO] [stdout]     |
[INFO] [stdout] 395 |     fn json_filename(&self) -> PathBuf {
[INFO] [stdout]     |                                ------- expected `PathBuf` because of return type
[INFO] [stdout] 396 |         let path = PathBuf::from(self.sample_name());
[INFO] [stdout] 397 |         path.add_extension(".drprg.json".as_ref())
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `PathBuf`, found `bool`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0308`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `drprg` (bin "drprg") due to 5 previous errors
[INFO] running `Command { std: "docker" "inspect" "41761bc7f7b4f63b7acc7672dbdcab761fdce1c931d1edecb80ca47f32932c15", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "41761bc7f7b4f63b7acc7672dbdcab761fdce1c931d1edecb80ca47f32932c15", kill_on_drop: false }`
[INFO] [stdout] 41761bc7f7b4f63b7acc7672dbdcab761fdce1c931d1edecb80ca47f32932c15
