[INFO] fetching crate ncbi-vdb-sys 0.1.6...
[INFO] testing ncbi-vdb-sys-0.1.6 against beta-2025-09-21 for beta-1.91-3
[INFO] extracting crate ncbi-vdb-sys 0.1.6 into /workspace/builds/worker-7-tc2/source
[INFO] removed /workspace/builds/worker-7-tc2/source/.cargo/config.toml
[INFO] started tweaking crates.io crate ncbi-vdb-sys 0.1.6
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate ncbi-vdb-sys 0.1.6
[INFO] tweaked toml for crates.io crate ncbi-vdb-sys 0.1.6 written to /workspace/builds/worker-7-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate ncbi-vdb-sys 0.1.6 on toolchain beta-2025-09-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate ncbi-vdb-sys 0.1.6 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a3602db2b520cf28d9d7ef64ba9767754cbda7653ab6a1862fa7e5eed6818d8d
[INFO] running `Command { std: "docker" "start" "-a" "a3602db2b520cf28d9d7ef64ba9767754cbda7653ab6a1862fa7e5eed6818d8d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a3602db2b520cf28d9d7ef64ba9767754cbda7653ab6a1862fa7e5eed6818d8d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a3602db2b520cf28d9d7ef64ba9767754cbda7653ab6a1862fa7e5eed6818d8d", kill_on_drop: false }`
[INFO] [stdout] a3602db2b520cf28d9d7ef64ba9767754cbda7653ab6a1862fa7e5eed6818d8d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 91a30a472e568c6278bcbe7183b713e2a18a2e4a33cedfbd74ed8d27bf31756a
[INFO] running `Command { std: "docker" "start" "-a" "91a30a472e568c6278bcbe7183b713e2a18a2e4a33cedfbd74ed8d27bf31756a", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.172
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling syn v2.0.101
[INFO] [stderr]    Compiling walkdir v2.5.0
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir)
[INFO] [stderr] error: failed to run custom build command for `ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/ncbi-vdb-sys-82e8f725fa2a604f/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=build.rs
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/libs
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/interfaces
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/setup/konfigure.perl
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/Makefile.env
[INFO] [stderr]   Configuring NCBI-VDB package
[INFO] [stderr]   checking system type... Linux
[INFO] [stderr]   checking OS distributor... 
[INFO] [stderr]   checking machine architecture... x86_64
[INFO] [stderr]   checking for supported architecture... x86_64 (64 bits) is supported
[INFO] [stderr]   checking for supported OS... Linux (linux) is supported
[INFO] [stderr]   checking for supported tool chain... gcc tool chain is supported
[INFO] [stderr]   checking for gcc... gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
[INFO] [stderr]   checking for g++... yes
[INFO] [stderr]   checking for Python 3... /usr/bin/python3
[INFO] [stderr]   checking whether g++ accepts -static-libstdc++... no
[INFO] [stderr]   checking for cmake... yes
[INFO] [stderr]   checking for fuse library... no
[INFO] [stderr]   checking for hdf5 library... no
[INFO] [stderr]   checking for magic library... no
[INFO] [stderr]   checking for xml2 library... no
[INFO] [stderr] 
[INFO] [stderr]   configure: creating 'build/ld.linux.exe_cmd.sh'
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   cannot open build/ld.linux.exe_cmd.sh to write at konfigure.perl line 885.
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (131) panicked at build.rs:37:13:
[INFO] [stderr]   Configure failed
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x623a8beb54f2 - std::backtrace_rs::backtrace::libunwind::trace::hcab59e1e990fdc24
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x623a8beb54f2 - std::backtrace_rs::backtrace::trace_unsynchronized::he24cc57f3d2f47b7
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x623a8beb54f2 - std::sys::backtrace::_print_fmt::hf8d65ede198eeb54
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x623a8beb54f2 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h67edf0e4d33c343c
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x623a8bec4a5f - core::fmt::rt::Argument::fmt::hef94184842aeafdd
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/fmt/rt.rs:173:76
[INFO] [stderr]      5:     0x623a8bec4a5f - core::fmt::write::hcf0c66b48a8fa606
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/fmt/mod.rs:1468:25
[INFO] [stderr]      6:     0x623a8be8b0a1 - std::io::default_write_fmt::h1ecb8c7cfa7da481
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x623a8be8b0a1 - std::io::Write::write_fmt::h051fe4a9e4fdbf48
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/io/mod.rs:1954:13
[INFO] [stderr]      8:     0x623a8be94a22 - std::sys::backtrace::BacktraceLock::print::h07e5435aa717b414
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x623a8be9679c - std::panicking::default_hook::{{closure}}::h91001850288db5f7
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:301:27
[INFO] [stderr]     10:     0x623a8be965f6 - std::panicking::default_hook::h2346dbb704ef5512
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:328:9
[INFO] [stderr]     11:     0x623a8be96e25 - std::panicking::panic_with_hook::hd2b063a6090d23a4
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:834:13
[INFO] [stderr]     12:     0x623a8be96c86 - std::panicking::panic_handler::{{closure}}::he666d95f139a333e
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:700:13
[INFO] [stderr]     13:     0x623a8be94b59 - std::sys::backtrace::__rust_end_short_backtrace::h631ad224854ebee5
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/sys/backtrace.rs:174:18
[INFO] [stderr]     14:     0x623a8be7f7ed - __rustc[1d67440d6e82e4f]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:698:5
[INFO] [stderr]     15:     0x623a8bec8090 - core::panicking::panic_fmt::h420ddb7fd73daf53
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/panicking.rs:75:14
[INFO] [stderr]     16:     0x623a8be628db - build_script_build::main::ha0462c37a0e5aebf
[INFO] [stderr]     17:     0x623a8be630e3 - core::ops::function::FnOnce::call_once::h027cd4ba4ac1294e
[INFO] [stderr]     18:     0x623a8be62da6 - std::sys::backtrace::__rust_begin_short_backtrace::h096c6613bcab3c35
[INFO] [stderr]     19:     0x623a8be62c99 - std::rt::lang_start::{{closure}}::h71f4cf01bfe3d168
[INFO] [stderr]     20:     0x623a8be8c9a0 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h4967fb77e0dfb65c
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/ops/function.rs:287:21
[INFO] [stderr]     21:     0x623a8be8c9a0 - std::panicking::catch_unwind::do_call::hf7e87675c3e14c23
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:590:40
[INFO] [stderr]     22:     0x623a8be8c9a0 - std::panicking::catch_unwind::h26f0e342004b5114
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:553:19
[INFO] [stderr]     23:     0x623a8be8c9a0 - std::panic::catch_unwind::h9ee33ca17775d897
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panic.rs:359:14
[INFO] [stderr]     24:     0x623a8be8c9a0 - std::rt::lang_start_internal::{{closure}}::h243ba3495fa13cf8
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/rt.rs:175:24
[INFO] [stderr]     25:     0x623a8be8c9a0 - std::panicking::catch_unwind::do_call::h819db0a7788e7259
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:590:40
[INFO] [stderr]     26:     0x623a8be8c9a0 - std::panicking::catch_unwind::h23e08fb4a7b9f405
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:553:19
[INFO] [stderr]     27:     0x623a8be8c9a0 - std::panic::catch_unwind::h7ca3d9eabb6135ff
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panic.rs:359:14
[INFO] [stderr]     28:     0x623a8be8c9a0 - std::rt::lang_start_internal::h06ad7395f4fda8d7
[INFO] [stderr]                                  at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/rt.rs:171:5
[INFO] [stderr]     29:     0x623a8be62c81 - std::rt::lang_start::he397dc9833028b2a
[INFO] [stderr]     30:     0x623a8be66075 - main
[INFO] [stderr]     31:     0x76349a7761ca - <unknown>
[INFO] [stderr]     32:     0x76349a77628b - __libc_start_main
[INFO] [stderr]     33:     0x623a8be61ec5 - _start
[INFO] [stderr]     34:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "91a30a472e568c6278bcbe7183b713e2a18a2e4a33cedfbd74ed8d27bf31756a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "91a30a472e568c6278bcbe7183b713e2a18a2e4a33cedfbd74ed8d27bf31756a", kill_on_drop: false }`
[INFO] [stdout] 91a30a472e568c6278bcbe7183b713e2a18a2e4a33cedfbd74ed8d27bf31756a
