[INFO] fetching crate ncbi-vdb-sys 0.1.6...
[INFO] testing ncbi-vdb-sys-0.1.6 against 1.90.0 for beta-1.91-3
[INFO] extracting crate ncbi-vdb-sys 0.1.6 into /workspace/builds/worker-7-tc1/source
[INFO] removed /workspace/builds/worker-7-tc1/source/.cargo/config.toml
[INFO] started tweaking crates.io crate ncbi-vdb-sys 0.1.6
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate ncbi-vdb-sys 0.1.6
[INFO] tweaked toml for crates.io crate ncbi-vdb-sys 0.1.6 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate ncbi-vdb-sys 0.1.6 on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate ncbi-vdb-sys 0.1.6 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded clap v4.5.37
[INFO] [stderr]   Downloaded clap_builder v4.5.37
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b7a0706e432a9f602880e47f603b3c94f6bda09ed99418c755d58a831a2828e0
[INFO] running `Command { std: "docker" "start" "-a" "b7a0706e432a9f602880e47f603b3c94f6bda09ed99418c755d58a831a2828e0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b7a0706e432a9f602880e47f603b3c94f6bda09ed99418c755d58a831a2828e0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b7a0706e432a9f602880e47f603b3c94f6bda09ed99418c755d58a831a2828e0", kill_on_drop: false }`
[INFO] [stdout] b7a0706e432a9f602880e47f603b3c94f6bda09ed99418c755d58a831a2828e0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 117a7042ab368285f73ef61ce014ebfe7745f24c47e439fa023334f168170347
[INFO] running `Command { std: "docker" "start" "-a" "117a7042ab368285f73ef61ce014ebfe7745f24c47e439fa023334f168170347", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.172
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling syn v2.0.101
[INFO] [stderr]    Compiling walkdir v2.5.0
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr] error: failed to run custom build command for `ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/ncbi-vdb-sys-8bfd2ea2ba03dfac/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=build.rs
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/libs
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/interfaces
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/setup/konfigure.perl
[INFO] [stderr]   cargo:rerun-if-changed=vendor/ncbi-vdb/Makefile.env
[INFO] [stderr]   Configuring NCBI-VDB package
[INFO] [stderr]   checking system type... Linux
[INFO] [stderr]   checking OS distributor... 
[INFO] [stderr]   checking machine architecture... x86_64
[INFO] [stderr]   checking for supported architecture... x86_64 (64 bits) is supported
[INFO] [stderr]   checking for supported OS... Linux (linux) is supported
[INFO] [stderr]   checking for supported tool chain... gcc tool chain is supported
[INFO] [stderr]   checking for gcc... gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
[INFO] [stderr]   checking for g++... yes
[INFO] [stderr]   checking for Python 3... /usr/bin/python3
[INFO] [stderr]   checking whether g++ accepts -static-libstdc++... no
[INFO] [stderr]   checking for cmake... yes
[INFO] [stderr]   checking for fuse library... no
[INFO] [stderr]   checking for hdf5 library... no
[INFO] [stderr]   checking for magic library... no
[INFO] [stderr]   checking for xml2 library... no
[INFO] [stderr] 
[INFO] [stderr]   configure: creating 'build/ld.linux.exe_cmd.sh'
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   cannot open build/ld.linux.exe_cmd.sh to write at konfigure.perl line 885.
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at build.rs:37:13:
[INFO] [stderr]   Configure failed
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x644cbadb3f72 - std::backtrace_rs::backtrace::libunwind::trace::h2d45396358f41939
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x644cbadb3f72 - std::backtrace_rs::backtrace::trace_unsynchronized::hffcefc0b67f1d6e2
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x644cbadb3f72 - std::sys::backtrace::_print_fmt::hd72f71d23b436b92
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x644cbadb3f72 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::hdcfcb6d4c8489523
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x644cbadd3b43 - core::fmt::rt::Argument::fmt::h2c56b3114963061a
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/fmt/rt.rs:173:76
[INFO] [stderr]      5:     0x644cbadd3b43 - core::fmt::write::h8a494366950f23bb
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/fmt/mod.rs:1468:25
[INFO] [stderr]      6:     0x644cbadb16d3 - std::io::default_write_fmt::ha27fbccbc65eb6fa
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x644cbadb16d3 - std::io::Write::write_fmt::h6556609fca33d0b1
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/io/mod.rs:1954:13
[INFO] [stderr]      8:     0x644cbadb3dc2 - std::sys::backtrace::BacktraceLock::print::hb2a626a81e06b2dc
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x644cbadb5193 - std::panicking::default_hook::{{closure}}::h4f78485264f12d10
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:300:27
[INFO] [stderr]     10:     0x644cbadb4f75 - std::panicking::default_hook::h2c66fc99e962531d
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:327:9
[INFO] [stderr]     11:     0x644cbadb5a65 - std::panicking::rust_panic_with_hook::h33ac55f64bbd807d
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:833:13
[INFO] [stderr]     12:     0x644cbadb58c6 - std::panicking::begin_panic_handler::{{closure}}::h30e7cb89678a57fe
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:699:13
[INFO] [stderr]     13:     0x644cbadb4469 - std::sys::backtrace::__rust_end_short_backtrace::hed60f27456c16ced
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:174:18
[INFO] [stderr]     14:     0x644cbadb558d - __rustc[de2ca18b4c54d5b8]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:697:5
[INFO] [stderr]     15:     0x644cbadd2e10 - core::panicking::panic_fmt::h62f63d096dd276af
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panicking.rs:75:14
[INFO] [stderr]     16:     0x644cbad74deb - build_script_build::main::hc045358e08430404
[INFO] [stderr]     17:     0x644cbad71903 - core::ops::function::FnOnce::call_once::h21864bb18bb5f61a
[INFO] [stderr]     18:     0x644cbad71586 - std::sys::backtrace::__rust_begin_short_backtrace::hceba5c3c692f3381
[INFO] [stderr]     19:     0x644cbad71479 - std::rt::lang_start::{{closure}}::h408539f6bae2687d
[INFO] [stderr]     20:     0x644cbadae030 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h638295a043b40957
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:290:21
[INFO] [stderr]     21:     0x644cbadae030 - std::panicking::catch_unwind::do_call::hbd68098bdea1ca50
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:589:40
[INFO] [stderr]     22:     0x644cbadae030 - std::panicking::catch_unwind::h50591d85bf847c7c
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:552:19
[INFO] [stderr]     23:     0x644cbadae030 - std::panic::catch_unwind::h2487b4c4f2ae22c6
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panic.rs:359:14
[INFO] [stderr]     24:     0x644cbadae030 - std::rt::lang_start_internal::{{closure}}::h61f0945cc6c9a811
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/rt.rs:175:24
[INFO] [stderr]     25:     0x644cbadae030 - std::panicking::catch_unwind::do_call::h34b9c3722acd6bd1
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:589:40
[INFO] [stderr]     26:     0x644cbadae030 - std::panicking::catch_unwind::hf9a822ea043fb0d6
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:552:19
[INFO] [stderr]     27:     0x644cbadae030 - std::panic::catch_unwind::h5b3cac802237ed89
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panic.rs:359:14
[INFO] [stderr]     28:     0x644cbadae030 - std::rt::lang_start_internal::h34f9328d113fd60a
[INFO] [stderr]                                  at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/rt.rs:171:5
[INFO] [stderr]     29:     0x644cbad71461 - std::rt::lang_start::h01ab0d42a91585da
[INFO] [stderr]     30:     0x644cbad75175 - main
[INFO] [stderr]     31:     0x7ff4bceaa1ca - <unknown>
[INFO] [stderr]     32:     0x7ff4bceaa28b - __libc_start_main
[INFO] [stderr]     33:     0x644cbad71015 - _start
[INFO] [stderr]     34:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "117a7042ab368285f73ef61ce014ebfe7745f24c47e439fa023334f168170347", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "117a7042ab368285f73ef61ce014ebfe7745f24c47e439fa023334f168170347", kill_on_drop: false }`
[INFO] [stdout] 117a7042ab368285f73ef61ce014ebfe7745f24c47e439fa023334f168170347
