[INFO] cloning repository https://github.com/keithyin/rsabpoa
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/keithyin/rsabpoa" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Frsabpoa", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Frsabpoa'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 97f9901fb57de401d931d75482b308cd6fe7cc5e
[INFO] testing keithyin/rsabpoa against 1.90.0 for beta-1.91-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Frsabpoa" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/keithyin/rsabpoa
[INFO] finished tweaking git repo https://github.com/keithyin/rsabpoa
[INFO] tweaked toml for git repo https://github.com/keithyin/rsabpoa written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/keithyin/rsabpoa on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/keithyin/rsabpoa already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded crossbeam v0.8.4
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded simba v0.9.0
[INFO] [stderr]   Downloaded matrixmultiply v0.3.9
[INFO] [stderr]   Downloaded zerocopy-derive v0.8.22
[INFO] [stderr]   Downloaded wide v0.7.32
[INFO] [stderr]   Downloaded rust-htslib v0.49.0
[INFO] [stderr]   Downloaded gskits v0.13.2
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded zerocopy v0.8.22
[INFO] [stderr]   Downloaded bio v2.2.0
[INFO] [stderr]   Downloaded ndarray v0.16.1
[INFO] [stderr]   Downloaded nalgebra v0.33.2
[INFO] [stderr]   Downloaded bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]   Downloaded petgraph v0.7.1
[INFO] [stderr]   Downloaded lzma-sys v0.1.20
[INFO] [stderr]   Downloaded libz-sys v1.1.21
[INFO] [stderr]   Downloaded curl-sys v0.4.80+curl-8.12.1
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.4.2+3.4.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 33593af13407d8a78f0ab1613a40287dd529c2ad2804d2a142738270ee96a423
[INFO] running `Command { std: "docker" "start" "-a" "33593af13407d8a78f0ab1613a40287dd529c2ad2804d2a142738270ee96a423", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "33593af13407d8a78f0ab1613a40287dd529c2ad2804d2a142738270ee96a423", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "33593af13407d8a78f0ab1613a40287dd529c2ad2804d2a142738270ee96a423", kill_on_drop: false }`
[INFO] [stdout] 33593af13407d8a78f0ab1613a40287dd529c2ad2804d2a142738270ee96a423
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 735f0320cae955386cb999d9ea1822df2da07984accd449b95608f4dc06c823d
[INFO] running `Command { std: "docker" "start" "-a" "735f0320cae955386cb999d9ea1822df2da07984accd449b95608f4dc06c823d", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.11
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling glob v0.3.2
[INFO] [stderr]    Compiling serde v1.0.218
[INFO] [stderr]    Compiling libc v0.2.170
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling libloading v0.8.6
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling quote v1.0.39
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling rustversion v1.0.20
[INFO] [stderr]    Compiling bytemuck v1.22.0
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling syn v2.0.99
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling smallvec v1.14.0
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling bitflags v2.9.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling thiserror v2.0.12
[INFO] [stderr]    Compiling zerocopy v0.8.22
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling percent-encoding v2.3.1
[INFO] [stderr]    Compiling portable-atomic v1.11.0
[INFO] [stderr]    Compiling hashbrown v0.15.2
[INFO] [stderr]    Compiling form_urlencoded v1.2.1
[INFO] [stderr]    Compiling wide v0.7.32
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling unicode-width v0.2.0
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling getrandom v0.3.1
[INFO] [stderr]    Compiling cc v1.2.16
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling rand_core v0.9.3
[INFO] [stderr]    Compiling indexmap v2.7.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling petgraph v0.7.1
[INFO] [stderr]    Compiling console v0.15.11
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling tracing-core v0.1.33
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling simba v0.9.0
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling sha1_smol v1.0.1
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling openssl-src v300.4.2+3.4.1
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling uuid v1.15.1
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling chrono v0.4.40
[INFO] [stderr]    Compiling indicatif v0.17.11
[INFO] [stderr]    Compiling crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.14
[INFO] [stderr]    Compiling crossbeam-queue v0.3.12
[INFO] [stderr]    Compiling rsabpoa v0.4.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling libz-sys v1.1.21
[INFO] [stderr]    Compiling openssl-sys v0.9.106
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.80+curl-8.12.1
[INFO] [stderr]    Compiling crossbeam v0.8.4
[INFO] [stderr]    Compiling synstructure v0.13.1
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]    Compiling zerovec-derive v0.10.3
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling icu_provider_macros v1.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.218
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling tracing-attributes v0.1.28
[INFO] [stderr]    Compiling clap_derive v4.5.28
[INFO] [stderr]    Compiling zerocopy v0.7.35
[INFO] [stderr]    Compiling zerofrom v0.1.6
[INFO] [stderr]    Compiling yoke v0.7.5
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling zerovec v0.10.4
[INFO] [stderr]    Compiling ppv-lite86 v0.2.20
[INFO] [stderr]    Compiling tracing v0.1.41
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling rand v0.9.0
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling clap v4.5.31
[INFO] [stderr]    Compiling tinystr v0.7.6
[INFO] [stderr]    Compiling icu_collections v1.5.0
[INFO] [stderr]    Compiling icu_locid v1.5.0
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling icu_provider v1.5.0
[INFO] [stderr]    Compiling icu_locid_transform v1.5.0
[INFO] [stderr]    Compiling icu_properties v1.5.1
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling icu_normalizer v1.5.0
[INFO] [stderr]    Compiling idna_adapter v1.2.0
[INFO] [stderr]    Compiling idna v1.0.3
[INFO] [stderr]    Compiling url v2.5.4
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling multimap v0.10.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.2.0
[INFO] [stderr]    Compiling rust-htslib v0.49.0
[INFO] [stderr]    Compiling gskits v0.13.2
[INFO] [stdout] warning: type `__off_t` should have an upper camel case name
[INFO] [stdout]   --> src/abpoa_sys.rs:83:10
[INFO] [stdout]    |
[INFO] [stdout] 83 | pub type __off_t = ::std::os::raw::c_long;
[INFO] [stdout]    |          ^^^^^^^ help: convert the identifier to upper camel case: `OffT`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_camel_case_types)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type `__off64_t` should have an upper camel case name
[INFO] [stdout]   --> src/abpoa_sys.rs:84:10
[INFO] [stdout]    |
[INFO] [stdout] 84 | pub type __off64_t = ::std::os::raw::c_long;
[INFO] [stdout]    |          ^^^^^^^^^ help: convert the identifier to upper camel case: `Off64T`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type `__m128i` should have an upper camel case name
[INFO] [stdout]   --> src/abpoa_sys.rs:85:10
[INFO] [stdout]    |
[INFO] [stdout] 85 | pub type __m128i = [::std::os::raw::c_longlong; 2usize];
[INFO] [stdout]    |          ^^^^^^^ help: convert the identifier to upper camel case: `M128i`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type `_IO_lock_t` should have an upper camel case name
[INFO] [stdout]    --> src/abpoa_sys.rs:102:10
[INFO] [stdout]     |
[INFO] [stdout] 102 | pub type _IO_lock_t = ::std::os::raw::c_void;
[INFO] [stdout]     |          ^^^^^^^^^^ help: convert the identifier to upper camel case: `IoLockT`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `marker::PhantomData`
[INFO] [stdout]  --> src/abpoa.rs:1:23
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::{ffi::c_int, marker::PhantomData, ops::Deref};
[INFO] [stdout]   |                       ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `abpoa_add_graph_alignment`, `abpoa_align_sequence_to_graph`, `abpoa_cons_t`, `abpoa_free`, `abpoa_generate_consensus`, `abpoa_generate_rc_msa`, `abpoa_init`, `abpoa_msa1`, `abpoa_post_set_para`, `abpoa_reset`, and `utils::reverse_complement`
[INFO] [stdout]   --> src/abpoa.rs:6:9
[INFO] [stdout]    |
[INFO] [stdout]  6 |         abpoa_add_graph_alignment, abpoa_align_sequence_to_graph, abpoa_cons_t, abpoa_free,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^  ^^^^^^^^^^
[INFO] [stdout]  7 |         abpoa_generate_consensus, abpoa_generate_rc_msa, abpoa_init, abpoa_msa, abpoa_msa1,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^             ^^^^^^^^^^
[INFO] [stdout]  8 |         abpoa_para_t, abpoa_post_set_para, abpoa_res_t, abpoa_reset, abpoa_t,
[INFO] [stdout]    |                       ^^^^^^^^^^^^^^^^^^^               ^^^^^^^^^^^
[INFO] [stdout]  9 |     },
[INFO] [stdout] 10 |     utils::reverse_complement,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `abpoa::AlignMode`
[INFO] [stdout]  --> src/wrapper.rs:3:13
[INFO] [stdout]   |
[INFO] [stdout] 3 | use crate::{abpoa::AlignMode, abpoa_sys::{
[INFO] [stdout]   |             ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_read_ptr` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:107:9
[INFO] [stdout]     |
[INFO] [stdout] 107 |     pub _IO_read_ptr: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_ptr`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_snake_case)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_read_end` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:108:9
[INFO] [stdout]     |
[INFO] [stdout] 108 |     pub _IO_read_end: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_end`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_read_base` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:109:9
[INFO] [stdout]     |
[INFO] [stdout] 109 |     pub _IO_read_base: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_read_base`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_write_base` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:110:9
[INFO] [stdout]     |
[INFO] [stdout] 110 |     pub _IO_write_base: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_base`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_write_ptr` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:111:9
[INFO] [stdout]     |
[INFO] [stdout] 111 |     pub _IO_write_ptr: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_ptr`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_write_end` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:112:9
[INFO] [stdout]     |
[INFO] [stdout] 112 |     pub _IO_write_end: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_write_end`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_buf_base` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:113:9
[INFO] [stdout]     |
[INFO] [stdout] 113 |     pub _IO_buf_base: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_buf_base`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_buf_end` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:114:9
[INFO] [stdout]     |
[INFO] [stdout] 114 |     pub _IO_buf_end: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_buf_end`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_save_base` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:115:9
[INFO] [stdout]     |
[INFO] [stdout] 115 |     pub _IO_save_base: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_save_base`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_backup_base` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:116:9
[INFO] [stdout]     |
[INFO] [stdout] 116 |     pub _IO_backup_base: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_backup_base`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `_IO_save_end` should have a snake case name
[INFO] [stdout]    --> src/abpoa_sys.rs:117:9
[INFO] [stdout]     |
[INFO] [stdout] 117 |     pub _IO_save_end: *mut ::std::os::raw::c_char,
[INFO] [stdout]     |         ^^^^^^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `_io_save_end`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note:  "cc" "-m64" "/tmp/rustc9JHFS6/symbols.o" "<17 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librsabpoa-546bdf5238895926,libgskits-a32f2d32fb7d8259,libnum_cpus-809bbf5ef9260db2,libuuid-d418e2e1c7098baa,libsha1_smol-2d5fc294961d1e58,libchrono-c9ad0ad6c95c1450,libiana_time_zone-f40fb3fd1722fffa,libindicatif-607871b5659ca0be,libportable_atomic-eaf3f0a003f51fa1,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-672ae052c9cac052,libunicode_width-413e00174b63117b,libonce_cell-93805221d77d444c,libbio-fbe93b7fbe94916b,libstrum-4679d802b6eead1a,libcsv-a7eaddebc73a0932,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-6aba7dfb7d862871,libbytecount-8234beb11e75d805,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-513830e8b1ba7a7d,libstatrs-247f14b35ddf78d2,libnalgebra-36f44fa91f45a3aa,librand_distr-28f4620e13d9969c,libnum_rational-cb11104859f2743a,libtypenum-987523825771ddad,libsimba-a013d36739438392,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-e680a95670287430,librand_chacha-7bb30014d3856d12,libppv_lite86-d7c996c4f0f26d7f,libzerocopy-c28ec1438b9ed37b,librand_core-89720e9345148a3c,libgetrandom-ec3c5dade0288b9d,libcfg_if-3183e62f61f23a61,libordered_float-9cf69ac56d814972,libndarray-efc3cd5951885a71,libmatrixmultiply-019e0e5668445cba,libnum_complex-c7e6152ebcfcfb8a,librawpointer-f73a58cd128df828,libmultimap-df0d600731132db9,libitertools-84d813d5e7608b24,libeither-d34eb70c8ca3ae87,libanyhow-8da934a0522d811b,libnum_integer-be3ea1656379f3aa,libbv-0e9d3d46185fde2d,libvec_map-0e1528b7d267a883,libserde-b9094f772b7cdf81,libbit_set-ba3ed83e4317f91e,libbit_vec-dfc9667cba086ae9,libfxhash-4da70fad991848bc,libpetgraph-40edfd5ae4391232,libindexmap-b4a3e93467c503d7,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-25768b5df1347498,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1,librust_htslib-569e114a75b88f35,libthiserror-4d3ef9a83272e4cb,libieee754-60e2000e17500601,libhts_sys-2a668d9856c31d58,liblzma_sys-7d40bd89ffdfb68e,libcurl_sys-e916468a2fee39ea,libopenssl_sys-b1ba96ea8fcd44f3,liblibz_sys-24e2e3e00bbd8905,liblibc-317f291a841a3693,libbzip2_sys-cd77ccc27017ec70,liburl-60d63c94a2ad7a2e,libidna-6caf306df578b37e,libidna_adapter-e0313aba47c72ad7,libicu_normalizer-3fb494409f30fbc8,libicu_normalizer_data-c8b7c0341c4e2b5f,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-2b006734e0087962,libicu_properties-056eecbaac3ba41a,libicu_properties_data-b5b9b11cefe065f7,libicu_locid_transform-d2a5ed8bd8383eda,libicu_locid_transform_data-8576e3fbdf497e17,libicu_collections-7a66f7b62c4ac9fc,libicu_provider-0fbe0f05a3ad99ce,libicu_locid-545af73c03eb1b5b,liblitemap-5d6ff1c38a537ea4,libtinystr-08c4b0817680a6b0,libzerovec-0143643654cfbf61,libwriteable-763d6213d7786cb3,libyoke-22826fa6e769a1af,libzerofrom-f6e00a8d3db05972,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,libbio_types-5d3f760a6d83962b,libthiserror-10addc296824896d,libbyteorder-3f91e0f3212dbed5,libregex-92e861d4d10c9c11,libregex_automata-c8d14152a82e1bc7,libaho_corasick-689bc23dcdad714a,libmemchr-19b8063cb8773ce3,libregex_syntax-a2301440a5fca75a,liblinear_map-d596f9554216bf54,liblazy_static-509a3481d98abb23,libnewtype_derive-4c81d7c987eb5ade,libcustom_derive-9dcd9871da8e8905,libcrossbeam-70c37b4b75751106,libcrossbeam_deque-c4a40318fe1e21a0,libcrossbeam_channel-af82ed417ef2108d,libcrossbeam_queue-4a33ce142ea1783a,libcrossbeam_epoch-331b6a766d29dc1d,libcrossbeam_utils-227be8784775253b,libclap-c33790339b498b40,libclap_builder-3b036ae1b07d523e,libstrsim-3c066906e8d6c466,libanstream-dfc30e3ac73f2cd5,libanstyle_query-db83a68c694b9d63,libis_terminal_polyfill-a5c67c126de8c486,libcolorchoice-a3b77acdbdb1ab0d,libanstyle_parse-29d48ff3e45feb97,libutf8parse-b4c8bbdcb9de0cd7,libclap_lex-8385a67ebf54a985,libanstyle-3993e49bc768331b}.rlib" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lm" "-lz" "-lpthread" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustc9JHFS6/raw-dylibs" "-B<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/rsabpoa-c1c553a1540d7599/out/abPOA-v1.5.3/lib" "-L" "/opt/rustwide/target/debug/build/hts-sys-3b34a9a3f9e3ad40/out" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-77b0cadb4f4dfde0/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-9596cb501dd8db47/out/build" "-L" "/opt/rustwide/target/debug/build/libz-sys-a72077ed47be9e31/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-a72077ed47be9e31/out/lib" "-L" "/opt/rustwide/target/debug/build/openssl-sys-69702fa4fb56ae6e/out/openssl-build/install/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-ad1728575f300e8f/out" "-L" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/abpoa_consensus-a1dc5cbbcb9cb999" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: some arguments are omitted. use `--verbose` to show all linker arguments
[INFO] [stdout]   = note: rust-lld: error: duplicate symbol: kvsprintf
[INFO] [stdout]           >>> defined at kstring.c:9 (src/kstring.c:9)
[INFO] [stdout]           >>>            kstring.o:(kvsprintf) in archive /opt/rustwide/target/debug/deps/librsabpoa-546bdf5238895926.rlib
[INFO] [stdout]           >>> defined at kstring.c:143 (/opt/rustwide/target/debug/build/hts-sys-3b34a9a3f9e3ad40/out/htslib/kstring.c:143)
[INFO] [stdout]           >>>            05557ae68d7d9a53-kstring.o:(.text.kvsprintf+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-2a668d9856c31d58.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: duplicate symbol: ksprintf
[INFO] [stdout]           >>> defined at kstring.c:28 (src/kstring.c:28)
[INFO] [stdout]           >>>            kstring.o:(ksprintf) in archive /opt/rustwide/target/debug/deps/librsabpoa-546bdf5238895926.rlib
[INFO] [stdout]           >>> defined at kstring.c:178 (/opt/rustwide/target/debug/build/hts-sys-3b34a9a3f9e3ad40/out/htslib/kstring.c:178)
[INFO] [stdout]           >>>            05557ae68d7d9a53-kstring.o:(.text.ksprintf+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-2a668d9856c31d58.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: duplicate symbol: kstrtok
[INFO] [stdout]           >>> defined at kstring.c:38 (src/kstring.c:38)
[INFO] [stdout]           >>>            kstring.o:(kstrtok) in archive /opt/rustwide/target/debug/deps/librsabpoa-546bdf5238895926.rlib
[INFO] [stdout]           >>> defined at kstring.c:188 (/opt/rustwide/target/debug/build/hts-sys-3b34a9a3f9e3ad40/out/htslib/kstring.c:188)
[INFO] [stdout]           >>>            05557ae68d7d9a53-kstring.o:(.text.kstrtok+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-2a668d9856c31d58.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: duplicate symbol: ksplit_core
[INFO] [stdout]           >>> defined at kstring.c:66 (src/kstring.c:66)
[INFO] [stdout]           >>>            kstring.o:(ksplit_core) in archive /opt/rustwide/target/debug/deps/librsabpoa-546bdf5238895926.rlib
[INFO] [stdout]           >>> defined at kstring.c:225 (/opt/rustwide/target/debug/build/hts-sys-3b34a9a3f9e3ad40/out/htslib/kstring.c:225)
[INFO] [stdout]           >>>            05557ae68d7d9a53-kstring.o:(.text.ksplit_core+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-2a668d9856c31d58.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: duplicate symbol: kgetline
[INFO] [stdout]           >>> defined at kstring.c:110 (src/kstring.c:110)
[INFO] [stdout]           >>>            kstring.o:(kgetline) in archive /opt/rustwide/target/debug/deps/librsabpoa-546bdf5238895926.rlib
[INFO] [stdout]           >>> defined at kstring.c:271 (/opt/rustwide/target/debug/build/hts-sys-3b34a9a3f9e3ad40/out/htslib/kstring.c:271)
[INFO] [stdout]           >>>            05557ae68d7d9a53-kstring.o:(.text.kgetline+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-2a668d9856c31d58.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: duplicate symbol: kmemmem
[INFO] [stdout]           >>> defined at kstring.c:177 (src/kstring.c:177)
[INFO] [stdout]           >>>            kstring.o:(kmemmem) in archive /opt/rustwide/target/debug/deps/librsabpoa-546bdf5238895926.rlib
[INFO] [stdout]           >>> defined at kstring.c:378 (/opt/rustwide/target/debug/build/hts-sys-3b34a9a3f9e3ad40/out/htslib/kstring.c:378)
[INFO] [stdout]           >>>            05557ae68d7d9a53-kstring.o:(.text.kmemmem+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-2a668d9856c31d58.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: duplicate symbol: kstrstr
[INFO] [stdout]           >>> defined at kstring.c:198 (src/kstring.c:198)
[INFO] [stdout]           >>>            kstring.o:(kstrstr) in archive /opt/rustwide/target/debug/deps/librsabpoa-546bdf5238895926.rlib
[INFO] [stdout]           >>> defined at kstring.c:400 (/opt/rustwide/target/debug/build/hts-sys-3b34a9a3f9e3ad40/out/htslib/kstring.c:400)
[INFO] [stdout]           >>>            05557ae68d7d9a53-kstring.o:(.text.kstrstr+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-2a668d9856c31d58.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: duplicate symbol: kstrnstr
[INFO] [stdout]           >>> defined at kstring.c:203 (src/kstring.c:203)
[INFO] [stdout]           >>>            kstring.o:(kstrnstr) in archive /opt/rustwide/target/debug/deps/librsabpoa-546bdf5238895926.rlib
[INFO] [stdout]           >>> defined at kstring.c:405 (/opt/rustwide/target/debug/build/hts-sys-3b34a9a3f9e3ad40/out/htslib/kstring.c:405)
[INFO] [stdout]           >>>            05557ae68d7d9a53-kstring.o:(.text.kstrnstr+0x0) in archive /opt/rustwide/target/debug/deps/libhts_sys-2a668d9856c31d58.rlib
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `rsabpoa` (bin "abpoa_consensus") due to 1 previous error
[INFO] running `Command { std: "docker" "inspect" "735f0320cae955386cb999d9ea1822df2da07984accd449b95608f4dc06c823d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "735f0320cae955386cb999d9ea1822df2da07984accd449b95608f4dc06c823d", kill_on_drop: false }`
[INFO] [stdout] 735f0320cae955386cb999d9ea1822df2da07984accd449b95608f4dc06c823d
