[INFO] fetching crate tskit_rust 0.1.0... [INFO] testing tskit_rust-0.1.0 against beta-2025-09-21 for beta-1.91-3 [INFO] extracting crate tskit_rust 0.1.0 into /workspace/builds/worker-3-tc2/source [INFO] started tweaking crates.io crate tskit_rust 0.1.0 [INFO] finished tweaking crates.io crate tskit_rust 0.1.0 [INFO] tweaked toml for crates.io crate tskit_rust 0.1.0 written to /workspace/builds/worker-3-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate tskit_rust 0.1.0 on toolchain beta-2025-09-21 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 55 packages to latest compatible versions [INFO] [stderr] Adding bindgen v0.56.0 (available: v0.72.1) [INFO] [stderr] Adding thiserror v1.0.69 (available: v2.0.17) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 57952d82836bae081dbefd060c75d1a493fbb263b91e8634196329c884f5715d [INFO] running `Command { std: "docker" "start" "-a" "57952d82836bae081dbefd060c75d1a493fbb263b91e8634196329c884f5715d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "57952d82836bae081dbefd060c75d1a493fbb263b91e8634196329c884f5715d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "57952d82836bae081dbefd060c75d1a493fbb263b91e8634196329c884f5715d", kill_on_drop: false }` [INFO] [stdout] 57952d82836bae081dbefd060c75d1a493fbb263b91e8634196329c884f5715d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9363418d8cff0ee851a3f65d24ef99b03be022052d68f3b34678df6f4b6ef0c0 [INFO] running `Command { std: "docker" "start" "-a" "9363418d8cff0ee851a3f65d24ef99b03be022052d68f3b34678df6f4b6ef0c0", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Compiling glob v0.3.3 [INFO] [stderr] Compiling regex-syntax v0.8.6 [INFO] [stderr] Compiling unicode-width v0.1.14 [INFO] [stderr] Compiling humantime v2.3.0 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling log v0.4.28 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling nom v5.1.3 [INFO] [stderr] Compiling libloading v0.8.9 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling bindgen v0.56.0 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling cc v1.2.39 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling regex-automata v0.4.11 [INFO] [stderr] Compiling regex v1.11.3 [INFO] [stderr] Compiling env_logger v0.8.4 [INFO] [stderr] Compiling tskit_rust v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `tskit_rust v0.1.0 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/tskit_rust-e1576509ddef89e9/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] OUT_DIR = Some(/opt/rustwide/target/debug/build/tskit_rust-0c97f3f5b1d70a93/out) [INFO] [stderr] OPT_LEVEL = Some(0) [INFO] [stderr] TARGET = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] HOST = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] cargo:rerun-if-env-changed=CC_x86_64-unknown-linux-gnu [INFO] [stderr] CC_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CC_x86_64_unknown_linux_gnu [INFO] [stderr] CC_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CC [INFO] [stderr] HOST_CC = None [INFO] [stderr] cargo:rerun-if-env-changed=CC [INFO] [stderr] CC = None [INFO] [stderr] cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT [INFO] [stderr] RUSTC_WRAPPER = None [INFO] [stderr] cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some(true) [INFO] [stderr] CARGO_CFG_TARGET_FEATURE = Some(fxsr,sse,sse2) [INFO] [stderr] cargo:rerun-if-env-changed=CFLAGS [INFO] [stderr] CFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CFLAGS [INFO] [stderr] HOST_CFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CFLAGS_x86_64_unknown_linux_gnu [INFO] [stderr] CFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CFLAGS_x86_64-unknown-linux-gnu [INFO] [stderr] CFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CARGO_ENCODED_RUSTFLAGS = Some(--cap-lints=warn) [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 0 [INFO] [stderr] exit status: 0 [INFO] [stderr] cargo:rerun-if-env-changed=AR_x86_64-unknown-linux-gnu [INFO] [stderr] AR_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=AR_x86_64_unknown_linux_gnu [INFO] [stderr] AR_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_AR [INFO] [stderr] HOST_AR = None [INFO] [stderr] cargo:rerun-if-env-changed=AR [INFO] [stderr] AR = None [INFO] [stderr] cargo:rerun-if-env-changed=ARFLAGS [INFO] [stderr] ARFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_ARFLAGS [INFO] [stderr] HOST_ARFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=ARFLAGS_x86_64_unknown_linux_gnu [INFO] [stderr] ARFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=ARFLAGS_x86_64-unknown-linux-gnu [INFO] [stderr] ARFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rustc-link-lib=static=tskit [INFO] [stderr] cargo:rustc-link-search=native=/opt/rustwide/target/debug/build/tskit_rust-0c97f3f5b1d70a93/out [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/core.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/math.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/libc-header-start.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features-time64.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wordsize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/timesize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wordsize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/stdc-predef.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/sys/cdefs.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wordsize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/long-double.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/gnu/stubs.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/gnu/stubs-64.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wordsize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/timesize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wordsize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/typesizes.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/time64.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/math-vector.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/libm-simd-decl-stubs.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/floatn.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/floatn-common.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/long-double.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/flt-eval-method.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/fp-logb.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/fp-fast.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/mathcalls-helper-functions.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/mathcalls.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/mathcalls-helper-functions.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/mathcalls.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/mathcalls-helper-functions.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/mathcalls.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stdbool.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stdint.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/stdint.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/libc-header-start.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wchar.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wordsize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/stdint-intn.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/stdint-uintn.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/stdint-least.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/stdio.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/libc-header-start.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stddef.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_size_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_null.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stdarg.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stdarg___gnuc_va_list.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/__fpos_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/__mbstate_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/__fpos64_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/__mbstate_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/__FILE.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/FILE.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/struct_FILE.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types/cookie_io_functions_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/types.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/stdio_lim.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/floatn.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/limits.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/limits.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/libc-header-start.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/features.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/posix1_lim.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/wordsize.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/local_lim.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/linux/limits.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/pthread_stack_min-dynamic.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/pthread_stack_min.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/x86_64-linux-gnu/bits/posix2_lim.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/trees.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/tables.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/stdio.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stdbool.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stdint.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/kastore/kastore.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stdbool.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stdint.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/stddef.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_ptrdiff_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_size_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_wchar_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_null.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_max_align_t.h [INFO] [stderr] cargo:rerun-if-changed=/usr/lib/llvm-18/lib/clang/18/include/__stddef_offsetof.h [INFO] [stderr] cargo:rerun-if-changed=/usr/include/stdio.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/core.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/genotypes.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/trees.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/convert.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/trees.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/stats.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/trees.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/haplotype_matching.h [INFO] [stderr] cargo:rerun-if-changed=subprojects/tskit/tskit/trees.h [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] thread 'main' (526) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bindgen-0.56.0/src/ir/context.rs:846:9: [INFO] [stderr] "tsk_table_collection_t_struct_(unnamed_at_subprojects/tskit/tskit/tables_h_589_5)" is not a valid Ident [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x62acbf11e142 - std::backtrace_rs::backtrace::libunwind::trace::hcab59e1e990fdc24 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x62acbf11e142 - std::backtrace_rs::backtrace::trace_unsynchronized::he24cc57f3d2f47b7 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x62acbf11e142 - std::sys::backtrace::_print_fmt::hf8d65ede198eeb54 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x62acbf11e142 - ::fmt::h67edf0e4d33c343c [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x62acbf1301cf - core::fmt::rt::Argument::fmt::hef94184842aeafdd [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x62acbf1301cf - core::fmt::write::hcf0c66b48a8fa606 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x62acbf0e76d1 - std::io::default_write_fmt::h1ecb8c7cfa7da481 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x62acbf0e76d1 - std::io::Write::write_fmt::h051fe4a9e4fdbf48 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x62acbf0f4ef2 - std::sys::backtrace::BacktraceLock::print::h07e5435aa717b414 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x62acbf0fa82f - std::panicking::default_hook::{{closure}}::h91001850288db5f7 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x62acbf0fa689 - std::panicking::default_hook::h2346dbb704ef5512 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x62acbf0faf65 - std::panicking::panic_with_hook::hd2b063a6090d23a4 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x62acbf0fad4a - std::panicking::panic_handler::{{closure}}::he666d95f139a333e [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:707:13 [INFO] [stderr] 13: 0x62acbf0f5029 - std::sys::backtrace::__rust_end_short_backtrace::h631ad224854ebee5 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x62acbf0db6fd - __rustc[1d67440d6e82e4f]::rust_begin_unwind [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x62acbf13a710 - core::panicking::panic_fmt::h420ddb7fd73daf53 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x62acbf0b742f - proc_macro2::fallback::validate_ident::h52123bc591f951e3 [INFO] [stderr] 17: 0x62acbf0b7b58 - proc_macro2::fallback::Ident::new_checked::ha7809f8049b2d3ed [INFO] [stderr] 18: 0x62acbf0bd4c2 - proc_macro2::imp::Ident::new_checked::h107d83e6e43bc436 [INFO] [stderr] 19: 0x62acbf0cb8b7 - proc_macro2::Ident::new::hc43f726c0da57b4e [INFO] [stderr] 20: 0x62acbecf4116 - bindgen::ir::context::BindgenContext::rust_ident_raw::h90394a5bd5f875c6 [INFO] [stderr] 21: 0x62acbecf2080 - bindgen::ir::context::BindgenContext::rust_ident::hf9fa16850d87ba9d [INFO] [stderr] 22: 0x62acbed59ff0 - ::codegen::hd25f42815818495f [INFO] [stderr] 23: 0x62acbecbc6e5 - ::codegen::hfe3de20574d74eaf [INFO] [stderr] 24: 0x62acbed1f097 - ::codegen::hbf97fce6557f6041 [INFO] [stderr] 25: 0x62acbed602c8 - ::codegen::hd25f42815818495f [INFO] [stderr] 26: 0x62acbecbc6e5 - ::codegen::hfe3de20574d74eaf [INFO] [stderr] 27: 0x62acbed1f097 - ::codegen::hbf97fce6557f6041 [INFO] [stderr] 28: 0x62acbec604b5 - ::codegen::{{closure}}::h7f3cab89c75e5285 [INFO] [stderr] 29: 0x62acbec3a78f - ::codegen::h114b238574df25c6 [INFO] [stderr] 30: 0x62acbed1f06f - ::codegen::hbf97fce6557f6041 [INFO] [stderr] 31: 0x62acbec6f43d - bindgen::codegen::codegen::{{closure}}::he1fefc3b0b9a064f [INFO] [stderr] 32: 0x62acbecffd48 - bindgen::ir::context::BindgenContext::gen::h84fb0b47a3f2c5e0 [INFO] [stderr] 33: 0x62acbec6eb7d - bindgen::codegen::codegen::haa823721ab10055f [INFO] [stderr] 34: 0x62acbed44bac - bindgen::Bindings::generate::h73d233c62b0569ce [INFO] [stderr] 35: 0x62acbed41671 - bindgen::Builder::generate::h991ec9d02506a136 [INFO] [stderr] 36: 0x62acbeb85c1c - build_script_build::main::hb6defc07a5fc77f5 [INFO] [stderr] 37: 0x62acbeb86713 - core::ops::function::FnOnce::call_once::h602a0d0f67f841f1 [INFO] [stderr] 38: 0x62acbeb86666 - std::sys::backtrace::__rust_begin_short_backtrace::hba32d314610fa42e [INFO] [stderr] 39: 0x62acbeb86649 - std::rt::lang_start::{{closure}}::hccadc623931e6280 [INFO] [stderr] 40: 0x62acbf0e93a0 - core::ops::function::impls:: for &F>::call_once::h4967fb77e0dfb65c [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 41: 0x62acbf0e93a0 - std::panicking::catch_unwind::do_call::hf7e87675c3e14c23 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:590:40 [INFO] [stderr] 42: 0x62acbf0e93a0 - std::panicking::catch_unwind::h26f0e342004b5114 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:553:19 [INFO] [stderr] 43: 0x62acbf0e93a0 - std::panic::catch_unwind::h9ee33ca17775d897 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panic.rs:359:14 [INFO] [stderr] 44: 0x62acbf0e93a0 - std::rt::lang_start_internal::{{closure}}::h243ba3495fa13cf8 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/rt.rs:175:24 [INFO] [stderr] 45: 0x62acbf0e93a0 - std::panicking::catch_unwind::do_call::h819db0a7788e7259 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:590:40 [INFO] [stderr] 46: 0x62acbf0e93a0 - std::panicking::catch_unwind::h23e08fb4a7b9f405 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:553:19 [INFO] [stderr] 47: 0x62acbf0e93a0 - std::panic::catch_unwind::h7ca3d9eabb6135ff [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panic.rs:359:14 [INFO] [stderr] 48: 0x62acbf0e93a0 - std::rt::lang_start_internal::h06ad7395f4fda8d7 [INFO] [stderr] at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/rt.rs:171:5 [INFO] [stderr] 49: 0x62acbeb86631 - std::rt::lang_start::hd6963d5b79a026bc [INFO] [stderr] 50: 0x62acbeb87ac5 - main [INFO] [stderr] 51: 0x7482cdcb71ca - [INFO] [stderr] 52: 0x7482cdcb728b - __libc_start_main [INFO] [stderr] 53: 0x62acbeb854d5 - _start [INFO] [stderr] 54: 0x0 - [INFO] running `Command { std: "docker" "inspect" "9363418d8cff0ee851a3f65d24ef99b03be022052d68f3b34678df6f4b6ef0c0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9363418d8cff0ee851a3f65d24ef99b03be022052d68f3b34678df6f4b6ef0c0", kill_on_drop: false }` [INFO] [stdout] 9363418d8cff0ee851a3f65d24ef99b03be022052d68f3b34678df6f4b6ef0c0