[INFO] fetching crate thaf 0.0.3...
[INFO] testing thaf-0.0.3 against beta-2025-09-21 for beta-1.91-3
[INFO] extracting crate thaf 0.0.3 into /workspace/builds/worker-0-tc2/source
[INFO] started tweaking crates.io crate thaf 0.0.3
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate thaf 0.0.3
[INFO] tweaked toml for crates.io crate thaf 0.0.3 written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate thaf 0.0.3 on toolchain beta-2025-09-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate thaf 0.0.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e6da6f62ee88e47dc9bbc08da860cae46541b0297533211c3358703db655b564
[INFO] running `Command { std: "docker" "start" "-a" "e6da6f62ee88e47dc9bbc08da860cae46541b0297533211c3358703db655b564", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e6da6f62ee88e47dc9bbc08da860cae46541b0297533211c3358703db655b564", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e6da6f62ee88e47dc9bbc08da860cae46541b0297533211c3358703db655b564", kill_on_drop: false }`
[INFO] [stdout] e6da6f62ee88e47dc9bbc08da860cae46541b0297533211c3358703db655b564
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 55c3dca3cf288d0a85179671c8aba798e4ee18c8c7a123ffbd5861b3aa31d217
[INFO] running `Command { std: "docker" "start" "-a" "55c3dca3cf288d0a85179671c8aba798e4ee18c8c7a123ffbd5861b3aa31d217", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling bytemuck v1.23.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustversion v1.0.21
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling indexmap v2.10.0
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling clap_builder v4.5.41
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling petgraph v0.8.2
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling simba v0.9.0
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling clap_derive v4.5.41
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling thiserror v2.0.12
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling clap v4.5.41
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling thaf v0.0.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 14s
[INFO] running `Command { std: "docker" "inspect" "55c3dca3cf288d0a85179671c8aba798e4ee18c8c7a123ffbd5861b3aa31d217", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "55c3dca3cf288d0a85179671c8aba798e4ee18c8c7a123ffbd5861b3aa31d217", kill_on_drop: false }`
[INFO] [stdout] 55c3dca3cf288d0a85179671c8aba798e4ee18c8c7a123ffbd5861b3aa31d217
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ffd2f13b4e1be9f09d5c53f59da874be2d21119c03abb2fdcdd2d8257a2aecdf
[INFO] running `Command { std: "docker" "start" "-a" "ffd2f13b4e1be9f09d5c53f59da874be2d21119c03abb2fdcdd2d8257a2aecdf", kill_on_drop: false }`
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling rustix v1.0.7
[INFO] [stderr]    Compiling tempfile v3.20.0
[INFO] [stderr]    Compiling thaf v0.0.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 7.46s
[INFO] running `Command { std: "docker" "inspect" "ffd2f13b4e1be9f09d5c53f59da874be2d21119c03abb2fdcdd2d8257a2aecdf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ffd2f13b4e1be9f09d5c53f59da874be2d21119c03abb2fdcdd2d8257a2aecdf", kill_on_drop: false }`
[INFO] [stdout] ffd2f13b4e1be9f09d5c53f59da874be2d21119c03abb2fdcdd2d8257a2aecdf
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 92edd9a41e024564e6c6c937935adaa6093b6f8e7ff9adfc173f5bf2e88b1e5b
[INFO] running `Command { std: "docker" "start" "-a" "92edd9a41e024564e6c6c937935adaa6093b6f8e7ff9adfc173f5bf2e88b1e5b", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/thaf-32e41ee598666d4c)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test gff3::tests::test_parse_attributes_basic ... ok
[INFO] [stdout] test transcript_builder::tests::test_build_transcripts_from_regions ... ok
[INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_minus ... ok
[INFO] [stdout] test gff3::tests::test_parse_gff3_to_regions_simple ... ok
[INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_plus ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_sort_minus ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_sort_plus ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_overlap_panic - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.08s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/thaf-e93f94320135abe6)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_minus ... ok
[INFO] [stdout] test gff3::tests::test_parse_attributes_basic ... ok
[INFO] [stdout] test transcript_builder::tests::test_build_transcripts_from_regions ... ok
[INFO] [stdout] test gff3::tests::test_parse_gff3_to_regions_simple ... ok
[INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_plus ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_sort_minus ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_sort_plus ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_overlap_panic - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/minitest.rs (/opt/rustwide/target/debug/deps/minitest-8628ec89010dc8a5)
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests thaf
[INFO] [stdout] running 1 test
[INFO] [stdout] test minimal_transcript_extraction ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "92edd9a41e024564e6c6c937935adaa6093b6f8e7ff9adfc173f5bf2e88b1e5b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "92edd9a41e024564e6c6c937935adaa6093b6f8e7ff9adfc173f5bf2e88b1e5b", kill_on_drop: false }`
[INFO] [stdout] 92edd9a41e024564e6c6c937935adaa6093b6f8e7ff9adfc173f5bf2e88b1e5b