[INFO] fetching crate raxtax 1.3.0...
[INFO] testing raxtax-1.3.0 against beta-2025-09-21 for beta-1.91-3
[INFO] extracting crate raxtax 1.3.0 into /workspace/builds/worker-3-tc2/source
[INFO] started tweaking crates.io crate raxtax 1.3.0
[INFO] finished tweaking crates.io crate raxtax 1.3.0
[INFO] tweaked toml for crates.io crate raxtax 1.3.0 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate raxtax 1.3.0 on toolchain beta-2025-09-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate raxtax 1.3.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6fe41795f11aaf5814be84ce457dea311d1a7c0371a20b99f1873ddcb16705c3
[INFO] running `Command { std: "docker" "start" "-a" "6fe41795f11aaf5814be84ce457dea311d1a7c0371a20b99f1873ddcb16705c3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6fe41795f11aaf5814be84ce457dea311d1a7c0371a20b99f1873ddcb16705c3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6fe41795f11aaf5814be84ce457dea311d1a7c0371a20b99f1873ddcb16705c3", kill_on_drop: false }`
[INFO] [stdout] 6fe41795f11aaf5814be84ce457dea311d1a7c0371a20b99f1873ddcb16705c3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] af3061f028c4c56296fdb72638fab7f3a1b231abfdb0f356714a8df457555ed7
[INFO] running `Command { std: "docker" "start" "-a" "af3061f028c4c56296fdb72638fab7f3a1b231abfdb0f356714a8df457555ed7", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling memchr v2.7.1
[INFO] [stderr]    Compiling paste v1.0.14
[INFO] [stderr]    Compiling bytemuck v1.15.0
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]    Compiling regex-syntax v0.8.2
[INFO] [stderr]    Compiling serde v1.0.203
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling syn v2.0.52
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling backtrace v0.3.69
[INFO] [stderr]    Compiling gimli v0.28.1
[INFO] [stderr]    Compiling portable-atomic v1.6.0
[INFO] [stderr]    Compiling strsim v0.11.0
[INFO] [stderr]    Compiling crc32fast v1.4.0
[INFO] [stderr]    Compiling safe_arch v0.7.1
[INFO] [stderr]    Compiling miniz_oxide v0.7.2
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling either v1.10.0
[INFO] [stderr]    Compiling clap_builder v4.5.2
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]    Compiling rustc-demangle v0.1.23
[INFO] [stderr]    Compiling wide v0.7.16
[INFO] [stderr]    Compiling aho-corasick v1.1.2
[INFO] [stderr]    Compiling object v0.32.2
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling log v0.4.21
[INFO] [stderr]    Compiling unicode-width v0.1.11
[INFO] [stderr]    Compiling crossbeam-deque v0.8.5
[INFO] [stderr]    Compiling anyhow v1.0.81
[INFO] [stderr]    Compiling console v0.15.8
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling crossbeam-queue v0.3.12
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling zerocopy v0.7.32
[INFO] [stderr]    Compiling regex-automata v0.4.6
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling rayon v1.9.0
[INFO] [stderr]    Compiling crossbeam v0.8.4
[INFO] [stderr]    Compiling flate2 v1.0.28
[INFO] [stderr]    Compiling simba v0.6.0
[INFO] [stderr]    Compiling core_affinity v0.8.1
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling exitcode v1.1.2
[INFO] [stderr]    Compiling addr2line v0.21.0
[INFO] [stderr]    Compiling serde_derive v1.0.203
[INFO] [stderr]    Compiling clap_derive v4.5.0
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling logging_timer_proc_macros v1.1.1
[INFO] [stderr]    Compiling indicatif v0.17.8
[INFO] [stderr]    Compiling logging_timer v1.1.1
[INFO] [stderr]    Compiling clap v4.5.2
[INFO] [stderr]    Compiling clap-verbosity-flag v2.2.0
[INFO] [stderr]    Compiling regex v1.10.4
[INFO] [stderr]    Compiling env_filter v0.1.0
[INFO] [stderr]    Compiling env_logger v0.11.3
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling raxtax v1.3.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]   --> src/lineage.rs:89:27
[INFO] [stdout]    |
[INFO] [stdout] 89 |                 .map(|&v| (v - 1.0 / self.tree.num_tips as f64)),
[INFO] [stdout]    |                           ^                                   ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 89 -                 .map(|&v| (v - 1.0 / self.tree.num_tips as f64)),
[INFO] [stdout] 89 +                 .map(|&v| v - 1.0 / self.tree.num_tips as f64),
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 33.57s
[INFO] running `Command { std: "docker" "inspect" "af3061f028c4c56296fdb72638fab7f3a1b231abfdb0f356714a8df457555ed7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "af3061f028c4c56296fdb72638fab7f3a1b231abfdb0f356714a8df457555ed7", kill_on_drop: false }`
[INFO] [stdout] af3061f028c4c56296fdb72638fab7f3a1b231abfdb0f356714a8df457555ed7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2598ebaa1d58cef0427bbda359a5e7876d03b41f6d0dce82ecfcfcde8c7036ef
[INFO] running `Command { std: "docker" "start" "-a" "2598ebaa1d58cef0427bbda359a5e7876d03b41f6d0dce82ecfcfcde8c7036ef", kill_on_drop: false }`
[INFO] [stderr]    Compiling raxtax v1.3.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]   --> src/lineage.rs:89:27
[INFO] [stdout]    |
[INFO] [stdout] 89 |                 .map(|&v| (v - 1.0 / self.tree.num_tips as f64)),
[INFO] [stdout]    |                           ^                                   ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 89 -                 .map(|&v| (v - 1.0 / self.tree.num_tips as f64)),
[INFO] [stdout] 89 +                 .map(|&v| v - 1.0 / self.tree.num_tips as f64),
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]   --> src/lineage.rs:89:27
[INFO] [stdout]    |
[INFO] [stdout] 89 |                 .map(|&v| (v - 1.0 / self.tree.num_tips as f64)),
[INFO] [stdout]    |                           ^                                   ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 89 -                 .map(|&v| (v - 1.0 / self.tree.num_tips as f64)),
[INFO] [stdout] 89 +                 .map(|&v| v - 1.0 / self.tree.num_tips as f64),
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 2.45s
[INFO] running `Command { std: "docker" "inspect" "2598ebaa1d58cef0427bbda359a5e7876d03b41f6d0dce82ecfcfcde8c7036ef", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2598ebaa1d58cef0427bbda359a5e7876d03b41f6d0dce82ecfcfcde8c7036ef", kill_on_drop: false }`
[INFO] [stdout] 2598ebaa1d58cef0427bbda359a5e7876d03b41f6d0dce82ecfcfcde8c7036ef
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] e2a6ab4ea8f562f89848bd63fbbaf16616051bc95088cf1203a3748b074dc5f2
[INFO] running `Command { std: "docker" "start" "-a" "e2a6ab4ea8f562f89848bd63fbbaf16616051bc95088cf1203a3748b074dc5f2", kill_on_drop: false }`
[INFO] [stderr] warning: unnecessary parentheses around closure body
[INFO] [stderr]   --> src/lineage.rs:89:27
[INFO] [stderr]    |
[INFO] [stderr] 89 |                 .map(|&v| (v - 1.0 / self.tree.num_tips as f64)),
[INFO] [stderr]    |                           ^                                   ^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 89 -                 .map(|&v| (v - 1.0 / self.tree.num_tips as f64)),
[INFO] [stderr] 89 +                 .map(|&v| v - 1.0 / self.tree.num_tips as f64),
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: `raxtax` (lib) generated 1 warning (run `cargo fix --lib -p raxtax` to apply 1 suggestion)
[INFO] [stderr] warning: `raxtax` (lib test) generated 1 warning (1 duplicate)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.15s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/raxtax-55d9c6f1834d36c3)
[INFO] [stdout] 
[INFO] [stdout] running 14 tests
[INFO] [stdout] test parser::tests::test_query_parser ... ok
[INFO] [stdout] test prob::tests::test_pmf ... ok
[INFO] [stdout] test utils::tests::test_cosine_similarity ... ok
[INFO] [stdout] test prob::tests::test_hit_prob ... ok
[INFO] [stdout] test utils::tests::test_decompress_sequence ... ok
[INFO] [stdout] test utils::tests::test_euclidean_distance ... ok
[INFO] [stdout] test utils::tests::test_sequence_to_kmers ... ok
[INFO] [stdout] test utils::tests::test_map ... ok
[INFO] [stdout] test utils::tests::test_euclidean_norm ... ok
[INFO] [stdout] test parser::tests::test_str_parser ... ok
[INFO] [stdout] test lineage::tests::test_likelihood_edge_case ... ok
[INFO] [stdout] test lineage::tests::test_tree_construction ... ok
[INFO] [stdout] test parser::tests::test_kmers ... ok
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/raxtax-725d4fc31d84cc7d)
[INFO] [stdout] test lineage::tests::test_variable_lineage_length ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 14 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.10s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests raxtax
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr] warning: unnecessary parentheses around closure body
[INFO] [stderr]   --> src/lineage.rs:89:27
[INFO] [stderr]    |
[INFO] [stderr] 89 |                 .map(|&v| (v - 1.0 / self.tree.num_tips as f64)),
[INFO] [stderr]    |                           ^                                   ^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 89 -                 .map(|&v| (v - 1.0 / self.tree.num_tips as f64)),
[INFO] [stderr] 89 +                 .map(|&v| v - 1.0 / self.tree.num_tips as f64),
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: 1 warning emitted
[INFO] [stderr] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "e2a6ab4ea8f562f89848bd63fbbaf16616051bc95088cf1203a3748b074dc5f2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e2a6ab4ea8f562f89848bd63fbbaf16616051bc95088cf1203a3748b074dc5f2", kill_on_drop: false }`
[INFO] [stdout] e2a6ab4ea8f562f89848bd63fbbaf16616051bc95088cf1203a3748b074dc5f2