[INFO] fetching crate pombase-gocam 0.97.0...
[INFO] testing pombase-gocam-0.97.0 against beta-2025-09-21 for beta-1.91-3
[INFO] extracting crate pombase-gocam 0.97.0 into /workspace/builds/worker-4-tc2/source
[INFO] started tweaking crates.io crate pombase-gocam 0.97.0
[INFO] finished tweaking crates.io crate pombase-gocam 0.97.0
[INFO] tweaked toml for crates.io crate pombase-gocam 0.97.0 written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate pombase-gocam 0.97.0 on toolchain beta-2025-09-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate pombase-gocam 0.97.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 595b0845b7a76a80858fdccff3bfe87f97aa059a780303bc50eccb4c8741f05e
[INFO] running `Command { std: "docker" "start" "-a" "595b0845b7a76a80858fdccff3bfe87f97aa059a780303bc50eccb4c8741f05e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "595b0845b7a76a80858fdccff3bfe87f97aa059a780303bc50eccb4c8741f05e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "595b0845b7a76a80858fdccff3bfe87f97aa059a780303bc50eccb4c8741f05e", kill_on_drop: false }`
[INFO] [stdout] 595b0845b7a76a80858fdccff3bfe87f97aa059a780303bc50eccb4c8741f05e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ef3fca864a4fa4d35d813e8820bb89d44da13dc8c0202e22c9ffb6324ec6c19a
[INFO] running `Command { std: "docker" "start" "-a" "ef3fca864a4fa4d35d813e8820bb89d44da13dc8c0202e22c9ffb6324ec6c19a", kill_on_drop: false }`
[INFO] [stderr]    Compiling siphasher v1.0.1
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling allocator-api2 v0.2.21
[INFO] [stderr]    Compiling foldhash v0.1.5
[INFO] [stderr]    Compiling memchr v2.7.5
[INFO] [stderr]    Compiling regex-syntax v0.8.6
[INFO] [stderr]    Compiling anyhow v1.0.98
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling phf_shared v0.11.3
[INFO] [stderr]    Compiling hashbrown v0.15.4
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling indexmap v2.9.0
[INFO] [stderr]    Compiling regex-automata v0.4.10
[INFO] [stderr]    Compiling phf_macros v0.11.3
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling serde_yaml v0.9.34+deprecated
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]    Compiling regex v1.11.2
[INFO] [stderr]    Compiling petgraph v0.8.2
[INFO] [stderr]    Compiling pombase-gocam v0.97.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 26.72s
[INFO] running `Command { std: "docker" "inspect" "ef3fca864a4fa4d35d813e8820bb89d44da13dc8c0202e22c9ffb6324ec6c19a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ef3fca864a4fa4d35d813e8820bb89d44da13dc8c0202e22c9ffb6324ec6c19a", kill_on_drop: false }`
[INFO] [stdout] ef3fca864a4fa4d35d813e8820bb89d44da13dc8c0202e22c9ffb6324ec6c19a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 57a3356651c9e6efe8490e98345dc9170f290ccbdd80fdacd466214794eb5ecf
[INFO] running `Command { std: "docker" "start" "-a" "57a3356651c9e6efe8490e98345dc9170f290ccbdd80fdacd466214794eb5ecf", kill_on_drop: false }`
[INFO] [stderr]    Compiling pombase-gocam v0.97.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 6.72s
[INFO] running `Command { std: "docker" "inspect" "57a3356651c9e6efe8490e98345dc9170f290ccbdd80fdacd466214794eb5ecf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "57a3356651c9e6efe8490e98345dc9170f290ccbdd80fdacd466214794eb5ecf", kill_on_drop: false }`
[INFO] [stdout] 57a3356651c9e6efe8490e98345dc9170f290ccbdd80fdacd466214794eb5ecf
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 9c41718a09c052740af45c8d352bf64642fb21ab6f880ce56573f384fe28b54e
[INFO] running `Command { std: "docker" "start" "-a" "9c41718a09c052740af45c8d352bf64642fb21ab6f880ce56573f384fe28b54e", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/pombase_gocam-609c7662efc2c7ca)
[INFO] [stdout] 
[INFO] [stdout] running 21 tests
[INFO] [stdout] test graph::tests::parse_raw_test ... ok
[INFO] [stdout] test tests::model_activity_enabled_by_test ... ok
[INFO] [stdout] test tests::retain_largest_subgraph_test ... ok
[INFO] [stdout] test tests::retain_enabling_genes_test ... ok
[INFO] [stdout] test raw::tests::parse_raw_test ... ok
[INFO] [stdout] test tests::parse_test ... ok
[INFO] [stdout] test gocam_py::tests::parse_test ... ok
[INFO] [stdout] test tests::test_genes_in_model ... ok
[INFO] [stdout] test tests::test_modified_genes_in_model ... ok
[INFO] [stdout] test tests::test_node_rel_direction ... ok
[INFO] [stdout] test tests::location_of_chemical ... ok
[INFO] [stdout] test tests::test_genes_enabling_activities ... ok
[INFO] [stdout] test tests::remove_chemicals_test ... ok
[INFO] [stdout] test tests::remove_chemicals_inputs_outputs_only_test ... ok
[INFO] [stdout] test raw::tests::parse_raw_test_with_complement ... ok
[INFO] [stdout] test tests::overlap_test ... ok
[INFO] [stdout] test tests::find_overlaps_test ... ok
[INFO] [stdout] test tests::merge_test ... ok
[INFO] [stdout] test tests::merge_test_three_models ... ok
[INFO] [stdout] test tests::merge_test_mss51 ... ok
[INFO] [stdout] test tests::merge_test_mss51_remove_chemicals ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 21 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.53s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests pombase_gocam
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test src/raw.rs - raw::gocam_parse_raw (line 445) ... ok
[INFO] [stdout] test src/lib.rs - (line 17) ... ok
[INFO] [stdout] test src/raw.rs - raw::GoCamRawModel (line 289) ... ok
[INFO] [stdout] test src/lib.rs - parse_gocam_model (line 2145) ... ok
[INFO] [stdout] test src/lib.rs - GoCamModel::new (line 221) ... ok
[INFO] [stdout] test src/raw.rs - raw (line 8) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.13s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "9c41718a09c052740af45c8d352bf64642fb21ab6f880ce56573f384fe28b54e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9c41718a09c052740af45c8d352bf64642fb21ab6f880ce56573f384fe28b54e", kill_on_drop: false }`
[INFO] [stdout] 9c41718a09c052740af45c8d352bf64642fb21ab6f880ce56573f384fe28b54e