[INFO] fetching crate poasta 0.1.0... [INFO] testing poasta-0.1.0 against beta-2025-09-21 for beta-1.91-3 [INFO] extracting crate poasta 0.1.0 into /workspace/builds/worker-5-tc2/source [INFO] started tweaking crates.io crate poasta 0.1.0 [INFO] finished tweaking crates.io crate poasta 0.1.0 [INFO] tweaked toml for crates.io crate poasta 0.1.0 written to /workspace/builds/worker-5-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate poasta 0.1.0 on toolchain beta-2025-09-21 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate poasta 0.1.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 93c99171984467cc5a8d8b89c9f57f10008d57be87bd596ea964bcd5d7376b70 [INFO] running `Command { std: "docker" "start" "-a" "93c99171984467cc5a8d8b89c9f57f10008d57be87bd596ea964bcd5d7376b70", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "93c99171984467cc5a8d8b89c9f57f10008d57be87bd596ea964bcd5d7376b70", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "93c99171984467cc5a8d8b89c9f57f10008d57be87bd596ea964bcd5d7376b70", kill_on_drop: false }` [INFO] [stdout] 93c99171984467cc5a8d8b89c9f57f10008d57be87bd596ea964bcd5d7376b70 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 6073cb8829fd9b33782e8499c1ded405c36ee602d780c8bee629775b86ea8d79 [INFO] running `Command { std: "docker" "start" "-a" "6073cb8829fd9b33782e8499c1ded405c36ee602d780c8bee629775b86ea8d79", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.85 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Compiling serde v1.0.203 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling memchr v2.7.2 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling zlib-rs v0.5.1 [INFO] [stderr] Compiling crc32fast v1.4.2 [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Compiling utf8parse v0.2.1 [INFO] [stderr] Compiling anstyle-parse v0.2.4 [INFO] [stderr] Compiling anstyle v1.0.7 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.0 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Compiling anstyle-query v1.0.3 [INFO] [stderr] Compiling allocator-api2 v0.2.21 [INFO] [stderr] Compiling foldhash v0.1.5 [INFO] [stderr] Compiling colorchoice v1.0.1 [INFO] [stderr] Compiling version_check v0.9.4 [INFO] [stderr] Compiling anstream v0.6.14 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling syn v2.0.66 [INFO] [stderr] Compiling bstr v1.11.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.15 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling hashbrown v0.15.4 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling serde_json v1.0.117 [INFO] [stderr] Compiling clap_lex v0.7.0 [INFO] [stderr] Compiling noodles-core v0.17.0 [INFO] [stderr] Compiling num-bigint v0.4.5 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling anyhow v1.0.86 [INFO] [stderr] Compiling indexmap v2.10.0 [INFO] [stderr] Compiling clap_builder v4.5.2 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling noodles-fastq v0.19.0 [INFO] [stderr] Compiling num-iter v0.1.45 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling itoa v1.0.11 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling ryu v1.0.18 [INFO] [stderr] Compiling once_cell v1.19.0 [INFO] [stderr] Compiling zerocopy v0.7.34 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling nonmax v0.5.5 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling num v0.4.3 [INFO] [stderr] Compiling serde_derive v1.0.203 [INFO] [stderr] Compiling clap_derive v4.5.4 [INFO] [stderr] Compiling libz-rs-sys v0.5.1 [INFO] [stderr] Compiling flate2 v1.1.2 [INFO] [stderr] Compiling noodles-bgzf v0.41.0 [INFO] [stderr] Compiling noodles-fasta v0.54.0 [INFO] [stderr] Compiling clap v4.5.4 [INFO] [stderr] Compiling noodles v0.99.0 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling smallvec v1.13.2 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling poasta v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 02s [INFO] running `Command { std: "docker" "inspect" "6073cb8829fd9b33782e8499c1ded405c36ee602d780c8bee629775b86ea8d79", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6073cb8829fd9b33782e8499c1ded405c36ee602d780c8bee629775b86ea8d79", kill_on_drop: false }` [INFO] [stdout] 6073cb8829fd9b33782e8499c1ded405c36ee602d780c8bee629775b86ea8d79 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 708a3066e3c3ccf82e93ad38dedfe599088daa646aa1d26e3d5a660a6375e555 [INFO] running `Command { std: "docker" "start" "-a" "708a3066e3c3ccf82e93ad38dedfe599088daa646aa1d26e3d5a660a6375e555", kill_on_drop: false }` [INFO] [stderr] Compiling poasta v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 4.04s [INFO] running `Command { std: "docker" "inspect" "708a3066e3c3ccf82e93ad38dedfe599088daa646aa1d26e3d5a660a6375e555", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "708a3066e3c3ccf82e93ad38dedfe599088daa646aa1d26e3d5a660a6375e555", kill_on_drop: false }` [INFO] [stdout] 708a3066e3c3ccf82e93ad38dedfe599088daa646aa1d26e3d5a660a6375e555 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 460e36823c8ba7d3c2883204a6768e7a98dabd7313433f239385a412a166bca9 [INFO] running `Command { std: "docker" "start" "-a" "460e36823c8ba7d3c2883204a6768e7a98dabd7313433f239385a412a166bca9", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.16s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/poasta-08da0faeb2df064a) [INFO] [stdout] [INFO] [stdout] running 20 tests [INFO] [stdout] test aligner::queue::tests::test_layered_queue ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_gap_cost_calculation ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_deletion_handling ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_mixed_operations ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_simple_alignment_comparison ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_state_transitions ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_bubble_graph_alignment ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_long_gap_preference ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_two_piece_breakpoint ... ok [INFO] [stdout] test io::gfa::tests::test_invalid_header ... ok [INFO] [stdout] test io::gfa::tests::test_invalid_link ... ok [INFO] [stdout] test io::gfa::tests::test_invalid_segment ... ok [INFO] [stdout] test io::gfa::tests::test_parse_header ... ok [INFO] [stdout] test io::graph::tests::test_load_graph_from_gfa ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_very_long_gaps ... ok [INFO] [stdout] test io::gfa::tests::test_parse_segment ... ok [INFO] [stdout] test bubbles::finder::tests::test_superbubble_finder ... ok [INFO] [stdout] test io::gfa::tests::test_parse_link ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_two_piece_behavior_simple ... ok [INFO] [stdout] test aligner::scoring::gap_affine_2piece::tests::test_invalid_parameters - should panic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 20 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/lasagna.rs (/opt/rustwide/target/debug/deps/lasagna-32c5fc8c83c66176) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/poasta.rs (/opt/rustwide/target/debug/deps/poasta-a907497fba757684) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests poasta [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "460e36823c8ba7d3c2883204a6768e7a98dabd7313433f239385a412a166bca9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "460e36823c8ba7d3c2883204a6768e7a98dabd7313433f239385a412a166bca9", kill_on_drop: false }` [INFO] [stdout] 460e36823c8ba7d3c2883204a6768e7a98dabd7313433f239385a412a166bca9