[INFO] fetching crate gff_diff 0.1.1... [INFO] testing gff_diff-0.1.1 against beta-2025-09-21 for beta-1.91-3 [INFO] extracting crate gff_diff 0.1.1 into /workspace/builds/worker-2-tc2/source [INFO] started tweaking crates.io crate gff_diff 0.1.1 [INFO] finished tweaking crates.io crate gff_diff 0.1.1 [INFO] tweaked toml for crates.io crate gff_diff 0.1.1 written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate gff_diff 0.1.1 on toolchain beta-2025-09-21 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate gff_diff 0.1.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d1e37b1cefc05c458a34dc15177f596b26d0daa34147dae08b5626932d8afffb [INFO] running `Command { std: "docker" "start" "-a" "d1e37b1cefc05c458a34dc15177f596b26d0daa34147dae08b5626932d8afffb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d1e37b1cefc05c458a34dc15177f596b26d0daa34147dae08b5626932d8afffb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d1e37b1cefc05c458a34dc15177f596b26d0daa34147dae08b5626932d8afffb", kill_on_drop: false }` [INFO] [stdout] d1e37b1cefc05c458a34dc15177f596b26d0daa34147dae08b5626932d8afffb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9497e714f21451cf8e5d80d8b94cd5dace6e31b6a9622eb35b6e5a133d4f20e0 [INFO] running `Command { std: "docker" "start" "-a" "9497e714f21451cf8e5d80d8b94cd5dace6e31b6a9622eb35b6e5a133d4f20e0", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.58 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling libc v0.2.82 [INFO] [stderr] Compiling serde_derive v1.0.119 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling serde v1.0.119 [INFO] [stderr] Compiling crossbeam-utils v0.8.1 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling const_fn v0.4.5 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Compiling byteorder v1.4.2 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling quote v1.0.8 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling indexmap v1.6.1 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.1 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling thread_local v1.1.0 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling regex-syntax v0.6.22 [INFO] [stderr] Compiling hashbrown v0.9.1 [INFO] [stderr] Compiling itoa v0.4.7 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling matrixmultiply v0.2.4 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling fixedbitset v0.2.0 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling serde_json v1.0.61 [INFO] [stderr] Compiling array-macro v1.0.5 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling snafu v0.6.10 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling enum-map v0.6.4 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling bio-types v0.10.0 [INFO] [stderr] Compiling ordered-float v1.1.1 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling libflate_lz77 v1.0.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.6.2 [INFO] [stderr] Compiling adler32 v1.2.0 [INFO] [stderr] Compiling triple_accel v0.3.4 [INFO] [stderr] Compiling rle-decode-fast v1.0.1 [INFO] [stderr] Compiling strum v0.18.0 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling libflate v1.0.3 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling ignore-result v0.2.0 [INFO] [stderr] Compiling bstr v0.2.14 [INFO] [stderr] Compiling csv v1.1.5 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.8.2 [INFO] [stderr] Compiling gff_diff v0.1.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/bin/gff_diff.rs:26:26 [INFO] [stdout] | [INFO] [stdout] 26 | Err(f) => panic!(f.to_string()), [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` (part of `#[warn(rust_2021_compatibility)]`) on by default [INFO] [stdout] help: add a "{}" format string to `Display` the message [INFO] [stdout] | [INFO] [stdout] 26 | Err(f) => panic!("{}", f.to_string()), [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [optimized + debuginfo] target(s) in 2m 40s [INFO] running `Command { std: "docker" "inspect" "9497e714f21451cf8e5d80d8b94cd5dace6e31b6a9622eb35b6e5a133d4f20e0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9497e714f21451cf8e5d80d8b94cd5dace6e31b6a9622eb35b6e5a133d4f20e0", kill_on_drop: false }` [INFO] [stdout] 9497e714f21451cf8e5d80d8b94cd5dace6e31b6a9622eb35b6e5a133d4f20e0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7ddeafbd0d78c3087021875d557b46293b9c3a6f6ff8c4a8c0b4afeadfae1269 [INFO] running `Command { std: "docker" "start" "-a" "7ddeafbd0d78c3087021875d557b46293b9c3a6f6ff8c4a8c0b4afeadfae1269", kill_on_drop: false }` [INFO] [stderr] Compiling gff_diff v0.1.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/bin/gff_diff.rs:26:26 [INFO] [stdout] | [INFO] [stdout] 26 | Err(f) => panic!(f.to_string()), [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` (part of `#[warn(rust_2021_compatibility)]`) on by default [INFO] [stdout] help: add a "{}" format string to `Display` the message [INFO] [stdout] | [INFO] [stdout] 26 | Err(f) => panic!("{}", f.to_string()), [INFO] [stdout] | +++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [optimized + debuginfo] target(s) in 14.70s [INFO] running `Command { std: "docker" "inspect" "7ddeafbd0d78c3087021875d557b46293b9c3a6f6ff8c4a8c0b4afeadfae1269", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7ddeafbd0d78c3087021875d557b46293b9c3a6f6ff8c4a8c0b4afeadfae1269", kill_on_drop: false }` [INFO] [stdout] 7ddeafbd0d78c3087021875d557b46293b9c3a6f6ff8c4a8c0b4afeadfae1269 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 66d6a921c5cf15a0b4990dfbddbe36e2a0bc9a77a1acd7dc9d5e679014c9a59b [INFO] running `Command { std: "docker" "start" "-a" "66d6a921c5cf15a0b4990dfbddbe36e2a0bc9a77a1acd7dc9d5e679014c9a59b", kill_on_drop: false }` [INFO] [stderr] warning: panic message is not a string literal [INFO] [stderr] --> src/bin/gff_diff.rs:26:26 [INFO] [stderr] | [INFO] [stderr] 26 | Err(f) => panic!(f.to_string()), [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stderr] = note: for more information, see [INFO] [stderr] = note: `#[warn(non_fmt_panics)]` (part of `#[warn(rust_2021_compatibility)]`) on by default [INFO] [stderr] help: add a "{}" format string to `Display` the message [INFO] [stderr] | [INFO] [stderr] 26 | Err(f) => panic!("{}", f.to_string()), [INFO] [stderr] | +++++ [INFO] [stderr] [INFO] [stderr] warning: `gff_diff` (bin "gff_diff" test) generated 1 warning (run `cargo fix --bin "gff_diff" --tests` to apply 1 suggestion) [INFO] [stderr] Finished `test` profile [optimized + debuginfo] target(s) in 0.15s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/gff_diff-256e6f3c3f7f8fe0) [INFO] [stdout] running 17 tests [INFO] [stdout] test tests::attribute_added ... ok [INFO] [stdout] test tests::alter_exon ... ok [INFO] [stdout] test tests::added_exon ... ok [INFO] [stdout] test tests::gene_validation_no_start ... ok [INFO] [stdout] test tests::gene_validation_ok ... ok [INFO] [stdout] test tests::gene_in_intron ... ok [INFO] [stdout] test tests::gene_validation_no_stop ... ok [INFO] [stdout] test tests::gene_merge ... ok [INFO] [stdout] test tests::iso_form ... ok [INFO] [stdout] test tests::gene_split ... ok [INFO] [stdout] test tests::iso_form_lost ... ok [INFO] [stdout] test tests::no_change ... ok [INFO] [stdout] test tests::gene_validation_3exons_ok ... ok [INFO] [stdout] test tests::new_gene ... ok [INFO] [stdout] test tests::no_change_isoforms ... ok [INFO] [stdout] test tests::utr_change ... ok [INFO] [stdout] test tests::remove_exon ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 17 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/gff_diff.rs (/opt/rustwide/target/debug/deps/gff_diff-908e93f2821017da) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests gff_diff [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "66d6a921c5cf15a0b4990dfbddbe36e2a0bc9a77a1acd7dc9d5e679014c9a59b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "66d6a921c5cf15a0b4990dfbddbe36e2a0bc9a77a1acd7dc9d5e679014c9a59b", kill_on_drop: false }` [INFO] [stdout] 66d6a921c5cf15a0b4990dfbddbe36e2a0bc9a77a1acd7dc9d5e679014c9a59b