[INFO] fetching crate fasten 0.8.7... [INFO] testing fasten-0.8.7 against beta-2025-09-21 for beta-1.91-3 [INFO] extracting crate fasten 0.8.7 into /workspace/builds/worker-3-tc2/source [INFO] started tweaking crates.io crate fasten 0.8.7 [INFO] finished tweaking crates.io crate fasten 0.8.7 [INFO] tweaked toml for crates.io crate fasten 0.8.7 written to /workspace/builds/worker-3-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate fasten 0.8.7 on toolchain beta-2025-09-21 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate fasten 0.8.7 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9d21f07835206bfffd2f6c534d68dfba535130a7bf1d63097993c44c8219b657 [INFO] running `Command { std: "docker" "start" "-a" "9d21f07835206bfffd2f6c534d68dfba535130a7bf1d63097993c44c8219b657", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9d21f07835206bfffd2f6c534d68dfba535130a7bf1d63097993c44c8219b657", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9d21f07835206bfffd2f6c534d68dfba535130a7bf1d63097993c44c8219b657", kill_on_drop: false }` [INFO] [stdout] 9d21f07835206bfffd2f6c534d68dfba535130a7bf1d63097993c44c8219b657 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d630226ec08344d235e36e666040689b44c44144c629f9c78fbe1ac3c25e2b38 [INFO] running `Command { std: "docker" "start" "-a" "d630226ec08344d235e36e666040689b44c44144c629f9c78fbe1ac3c25e2b38", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Compiling libc v0.2.149 [INFO] [stderr] Compiling autocfg v0.1.8 [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling num-traits v0.2.17 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling num-bigint v0.2.6 [INFO] [stderr] Compiling memchr v2.6.4 [INFO] [stderr] Compiling num-rational v0.2.4 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-iter v0.1.43 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling regex-syntax v0.8.2 [INFO] [stderr] Compiling owning_ref v0.2.4 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling miniz_oxide v0.7.1 [INFO] [stderr] Compiling smallvec v0.6.14 [INFO] [stderr] Compiling rand_isaac v0.1.1 [INFO] [stderr] Compiling rand_hc v0.1.0 [INFO] [stderr] Compiling rand_xorshift v0.1.1 [INFO] [stderr] Compiling rand_jitter v0.1.4 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling futures v0.1.31 [INFO] [stderr] Compiling unicode-width v0.1.11 [INFO] [stderr] Compiling smallvec v0.3.4 [INFO] [stderr] Compiling crossbeam v0.2.12 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling aho-corasick v1.1.2 [INFO] [stderr] Compiling cc v1.0.83 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling getrandom v0.2.10 [INFO] [stderr] Compiling thread-id v3.3.0 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stderr] Compiling time v0.1.45 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling threadpool v1.8.1 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling parking_lot_core v0.2.14 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling parking_lot v0.3.8 [INFO] [stderr] Compiling libz-sys v1.1.12 [INFO] [stderr] Compiling lz4-sys v1.9.4 [INFO] [stderr] Compiling multiqueue v0.3.2 [INFO] [stderr] Compiling flate2 v1.0.28 [INFO] [stderr] Compiling regex-automata v0.4.3 [INFO] [stderr] Compiling bam v0.1.4 [INFO] [stderr] Compiling num v0.2.1 [INFO] [stderr] Compiling statistical v1.0.0 [INFO] [stderr] Compiling fancy-regex v0.13.0 [INFO] [stderr] Compiling regex v1.10.2 [INFO] [stderr] Compiling lz4 v1.24.0 [INFO] [stderr] Compiling fastq v0.6.0 [INFO] [stderr] Compiling fasten v0.8.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 29.26s [INFO] running `Command { std: "docker" "inspect" "d630226ec08344d235e36e666040689b44c44144c629f9c78fbe1ac3c25e2b38", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d630226ec08344d235e36e666040689b44c44144c629f9c78fbe1ac3c25e2b38", kill_on_drop: false }` [INFO] [stdout] d630226ec08344d235e36e666040689b44c44144c629f9c78fbe1ac3c25e2b38 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f5594039d84448a53155c34d6dab6938085cb15901ec96bf237e3fd68b7bafa3 [INFO] running `Command { std: "docker" "start" "-a" "f5594039d84448a53155c34d6dab6938085cb15901ec96bf237e3fd68b7bafa3", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Compiling fasten v0.8.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.91s [INFO] running `Command { std: "docker" "inspect" "f5594039d84448a53155c34d6dab6938085cb15901ec96bf237e3fd68b7bafa3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f5594039d84448a53155c34d6dab6938085cb15901ec96bf237e3fd68b7bafa3", kill_on_drop: false }` [INFO] [stdout] f5594039d84448a53155c34d6dab6938085cb15901ec96bf237e3fd68b7bafa3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 30c3ade21b287336a98e492ca69197a1fdcc53f63f33a382a6839e1b3ee2804f [INFO] running `Command { std: "docker" "start" "-a" "30c3ade21b287336a98e492ca69197a1fdcc53f63f33a382a6839e1b3ee2804f", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/fasten-be1c8feb9e1061f4) [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test io::seq::test_new_seq ... ok [INFO] [stdout] test io::fastq::test_the_fast_reader ... ok [INFO] [stdout] test io::seq::test_cleanable ... ok [INFO] [stdout] test io::fastq::test_the_careful_reader ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_clean.rs (/opt/rustwide/target/debug/deps/fasten_clean-5f388e458f1a8e0f) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_combine.rs (/opt/rustwide/target/debug/deps/fasten_combine-a7da5253eeae39ed) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_convert.rs (/opt/rustwide/target/debug/deps/fasten_convert-c95b913adb157ca3) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_inspect.rs (/opt/rustwide/target/debug/deps/fasten_inspect-bc2408397b26a58b) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stderr] Running unittests src/bin/fasten_kmer.rs (/opt/rustwide/target/debug/deps/fasten_kmer-54dff63dde9bd561) [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test test_kmer_counting_4mers ... ok [INFO] [stdout] test test_kmer_counting_homopolymers ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_metrics.rs (/opt/rustwide/target/debug/deps/fasten_metrics-09332c40d40d7288) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_average_quality ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_mutate.rs (/opt/rustwide/target/debug/deps/fasten_mutate-ea1534d07a73ca2d) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_normalize.rs (/opt/rustwide/target/debug/deps/fasten_normalize-9f4b2def4ed14c97) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_pe.rs (/opt/rustwide/target/debug/deps/fasten_pe-591893cd6ad2f041) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_progress.rs (/opt/rustwide/target/debug/deps/fasten_progress-6d6210a638924a8d) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_quality_filter.rs (/opt/rustwide/target/debug/deps/fasten_quality_filter-f4ea5a0ca3402d09) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_randomize.rs (/opt/rustwide/target/debug/deps/fasten_randomize-5ba18f0258c722be) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_regex.rs (/opt/rustwide/target/debug/deps/fasten_regex-e85d97a94a0bf281) [INFO] [stderr] Running unittests src/bin/fasten_repair.rs (/opt/rustwide/target/debug/deps/fasten_repair-863ffca67481d608) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_replace.rs (/opt/rustwide/target/debug/deps/fasten_replace-44e6e3dd5b667ab8) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_sample.rs (/opt/rustwide/target/debug/deps/fasten_sample-172d005a7fc4ba3c) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_shuffle.rs (/opt/rustwide/target/debug/deps/fasten_shuffle-8ac118d8cf5c903f) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_sort.rs (/opt/rustwide/target/debug/deps/fasten_sort-1fca9d1944595d0d) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test test_sort_fastq_basic ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_straighten.rs (/opt/rustwide/target/debug/deps/fasten_straighten-f549a15da9395ff4) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test challenge_dataset ... ok [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_trim.rs (/opt/rustwide/target/debug/deps/fasten_trim-fee01e4b229ca32c) [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/bin/fasten_validate.rs (/opt/rustwide/target/debug/deps/fasten_validate-e7c189926db45f55) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests fasten [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "30c3ade21b287336a98e492ca69197a1fdcc53f63f33a382a6839e1b3ee2804f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "30c3ade21b287336a98e492ca69197a1fdcc53f63f33a382a6839e1b3ee2804f", kill_on_drop: false }` [INFO] [stdout] 30c3ade21b287336a98e492ca69197a1fdcc53f63f33a382a6839e1b3ee2804f