[INFO] fetching crate crispr_screen 0.3.21... [INFO] testing crispr_screen-0.3.21 against beta-2025-09-21 for beta-1.91-3 [INFO] extracting crate crispr_screen 0.3.21 into /workspace/builds/worker-1-tc2/source [INFO] started tweaking crates.io crate crispr_screen 0.3.21 [INFO] finished tweaking crates.io crate crispr_screen 0.3.21 [INFO] tweaked toml for crates.io crate crispr_screen 0.3.21 written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate crispr_screen 0.3.21 on toolchain beta-2025-09-21 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate crispr_screen 0.3.21 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] baa9ca4f3efebe29710be94c00b22080d76e5c5da52d1fd3a34418e1f17ec928 [INFO] running `Command { std: "docker" "start" "-a" "baa9ca4f3efebe29710be94c00b22080d76e5c5da52d1fd3a34418e1f17ec928", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "baa9ca4f3efebe29710be94c00b22080d76e5c5da52d1fd3a34418e1f17ec928", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "baa9ca4f3efebe29710be94c00b22080d76e5c5da52d1fd3a34418e1f17ec928", kill_on_drop: false }` [INFO] [stdout] baa9ca4f3efebe29710be94c00b22080d76e5c5da52d1fd3a34418e1f17ec928 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ccb9637704b76f75f21a2c8b60ca7a80c30e29eff263814e6e5cd558be389b24 [INFO] running `Command { std: "docker" "start" "-a" "ccb9637704b76f75f21a2c8b60ca7a80c30e29eff263814e6e5cd558be389b24", kill_on_drop: false }` [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling serde_core v1.0.226 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling serde v1.0.226 [INFO] [stderr] Compiling find-msvc-tools v0.1.1 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling array-init-cursor v0.2.1 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling target-features v0.1.6 [INFO] [stderr] Compiling castaway v0.2.4 [INFO] [stderr] Compiling polars-utils v0.43.1 [INFO] [stderr] Compiling simdutf8 v0.1.5 [INFO] [stderr] Compiling raw-cpuid v11.5.0 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling cc v1.2.37 [INFO] [stderr] Compiling planus v0.3.1 [INFO] [stderr] Compiling memmap2 v0.7.1 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling polars-schema v0.43.1 [INFO] [stderr] Compiling parking_lot_core v0.9.11 [INFO] [stderr] Compiling polars-arrow v0.43.1 [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Compiling strength_reduce v0.2.4 [INFO] [stderr] Compiling parking_lot v0.12.4 [INFO] [stderr] Compiling fast-float v0.2.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling streaming-iterator v0.1.9 [INFO] [stderr] Compiling atoi_simd v0.15.6 [INFO] [stderr] Compiling ethnum v1.5.2 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling polars-compute v0.43.1 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling regex-syntax v0.8.6 [INFO] [stderr] Compiling prettyplease v0.2.37 [INFO] [stderr] Compiling polars-core v0.43.1 [INFO] [stderr] Compiling anyhow v1.0.100 [INFO] [stderr] Compiling rand_core v0.9.3 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Compiling log v0.4.28 [INFO] [stderr] Compiling thiserror v2.0.16 [INFO] [stderr] Compiling xxhash-rust v0.8.15 [INFO] [stderr] Compiling streaming-decompression v0.1.2 [INFO] [stderr] Compiling rand_chacha v0.9.0 [INFO] [stderr] Compiling polars v0.43.1 [INFO] [stderr] Compiling parquet-format-safe v0.2.4 [INFO] [stderr] Compiling psm v0.1.26 [INFO] [stderr] Compiling stacker v0.1.21 [INFO] [stderr] Compiling glob v0.3.3 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling chrono v0.4.41 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling adjustp v0.1.6 [INFO] [stderr] Compiling noisy_float v0.2.0 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling clap_builder v4.5.48 [INFO] [stderr] Compiling rand v0.9.2 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling jiff v0.2.15 [INFO] [stderr] Compiling colored v3.0.0 [INFO] [stderr] Compiling regex-automata v0.4.10 [INFO] [stderr] Compiling darling_core v0.21.3 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Compiling multiversion-macros v0.7.4 [INFO] [stderr] Compiling bytemuck_derive v1.10.1 [INFO] [stderr] Compiling serde_derive v1.0.226 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling thiserror-impl v2.0.16 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Compiling clap_derive v4.5.47 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Compiling multiversion v0.7.4 [INFO] [stderr] Compiling bytemuck v1.23.2 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling regex v1.11.2 [INFO] [stderr] Compiling clap v4.5.48 [INFO] [stderr] Compiling ndarray-rand v0.15.0 [INFO] [stderr] Compiling env_filter v0.1.3 [INFO] [stderr] Compiling env_logger v0.11.8 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling darling_macro v0.21.3 [INFO] [stderr] Compiling darling v0.21.3 [INFO] [stderr] Compiling bon-macros v3.7.2 [INFO] [stderr] Compiling polars-arrow-format v0.1.0 [INFO] [stderr] Compiling indexmap v2.11.0 [INFO] [stderr] Compiling compact_str v0.8.1 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling simba v0.8.1 [INFO] [stderr] Compiling ndarray-stats v0.6.0 [INFO] [stderr] Compiling bon v3.7.2 [INFO] [stderr] Compiling geopagg v0.3.1 [INFO] [stderr] Compiling polars-error v0.43.1 [INFO] [stderr] Compiling nalgebra v0.32.6 [INFO] [stderr] Compiling polars-row v0.43.1 [INFO] [stderr] Compiling statrs v0.17.1 [INFO] [stderr] Compiling polars-parquet v0.43.1 [INFO] [stderr] Compiling intc v0.3.6 [INFO] [stderr] Compiling alpha-rra v0.3.3 [INFO] [stderr] Compiling polars-io v0.43.1 [INFO] [stderr] Compiling crispr_screen v0.3.21 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 35s [INFO] running `Command { std: "docker" "inspect" "ccb9637704b76f75f21a2c8b60ca7a80c30e29eff263814e6e5cd558be389b24", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ccb9637704b76f75f21a2c8b60ca7a80c30e29eff263814e6e5cd558be389b24", kill_on_drop: false }` [INFO] [stdout] ccb9637704b76f75f21a2c8b60ca7a80c30e29eff263814e6e5cd558be389b24 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 68cd6dcb4294698d6d10b46a57371e7cebc659c5ad2a281700297b2e702195b2 [INFO] running `Command { std: "docker" "start" "-a" "68cd6dcb4294698d6d10b46a57371e7cebc659c5ad2a281700297b2e702195b2", kill_on_drop: false }` [INFO] [stderr] Compiling crispr_screen v0.3.21 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 8.46s [INFO] running `Command { std: "docker" "inspect" "68cd6dcb4294698d6d10b46a57371e7cebc659c5ad2a281700297b2e702195b2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "68cd6dcb4294698d6d10b46a57371e7cebc659c5ad2a281700297b2e702195b2", kill_on_drop: false }` [INFO] [stdout] 68cd6dcb4294698d6d10b46a57371e7cebc659c5ad2a281700297b2e702195b2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 99f0df9af5cddcd94b188b56475b8393ddde13115c84293a38c016bfeb76cff1 [INFO] running `Command { std: "docker" "start" "-a" "99f0df9af5cddcd94b188b56475b8393ddde13115c84293a38c016bfeb76cff1", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.26s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/crispr_screen-4bc89c11b5698f1a) [INFO] [stdout] [INFO] [stdout] running 70 tests [INFO] [stdout] test aggregation::testing::test_enum ... ok [INFO] [stdout] test aggregation::testing::test_enum_inc_string ... ok [INFO] [stdout] test aggregation::testing::test_enum_invalid ... ok [INFO] [stdout] test aggregation::testing::test_enum_rra_string ... ok [INFO] [stdout] test aggregation::testing::test_enum_case_insensitive ... ok [INFO] [stdout] test aggregation::utils::testing::test_empirical_alpha ... ok [INFO] [stdout] test aggregation::utils::testing::test_mask_zeros ... ok [INFO] [stdout] test aggregation::utils::testing::test_set_alpha_threshold ... ok [INFO] [stdout] test enrich::enrichment_testing::testing::test_enrichment_test_cdf ... ok [INFO] [stdout] test aggregation::utils::testing::test_set_alpha_threshold_no_adjust ... ok [INFO] [stdout] test enrich::enrichment_testing::testing::test_calculate_p ... ok [INFO] [stdout] test enrich::enrichment_testing::testing::test_calculate_r ... ok [INFO] [stdout] test aggregation::utils::testing::test_filter_zeros ... ok [INFO] [stdout] test aggregation::utils::testing::test_filter_zeros_all ... ok [INFO] [stdout] test aggregation::utils::testing::test_filter_zeros_empty ... ok [INFO] [stdout] test aggregation::utils::testing::test_select_from_mask ... ok [INFO] [stdout] test aggregation::utils::testing::test_select_from_mask_array ... ok [INFO] [stdout] test enrich::enrichment_testing::testing::test_enrichment_test_sf ... ok [INFO] [stdout] test enrich::enrichment_testing::testing::test_get_nonzero_minimum ... ok [INFO] [stdout] test enrich::enrichment_testing::testing::test_map_enrichment ... ok [INFO] [stdout] test enrich::enrichment_testing::testing::test_select_treatments ... ok [INFO] [stdout] test enrich::enrichment_testing::testing::test_set_zero_to_minimum_nonzero ... ok [INFO] [stdout] test enrich::enrichment_testing::testing::test_set_nonzero_minimum ... ok [INFO] [stdout] test enrich::results::testing::test_calculate_base_mean ... ok [INFO] [stdout] test enrich::results::testing::test_calculate_log_fold_change ... ok [INFO] [stdout] test enrich::results::testing::test_enrichment_result ... ok [INFO] [stdout] test io::screenviz::testing::test_screenviz_incpvalue ... ok [INFO] [stdout] test model::logged_ols::testing::test_min_nonzero_none ... ok [INFO] [stdout] test enrich::results::testing::test_calculate_fdr ... ok [INFO] [stdout] test model::logged_ols::testing::test_min_nonzero_some ... ok [INFO] [stdout] test enrich::results::testing::test_calculate_fold_change ... ok [INFO] [stdout] test io::screenviz::testing::test_screenviz_rra ... ok [INFO] [stdout] test io::utils::testing::unsupported_datatypes_dataframe_to_ndarray ... ok [INFO] [stdout] test enrich::results::testing::test_calculate_twosided ... ok [INFO] [stdout] test io::utils::testing::mixed_type_dataframe_to_ndarray ... ok [INFO] [stdout] test io::screenviz::testing::test_screenviz_incprod ... ok [INFO] [stdout] test model::logged_ols::testing::test_mask_varied ... ok [INFO] [stdout] test model::logged_ols::testing::test_mask_zscore ... ok [INFO] [stdout] test model::logged_ols::testing::test_replace_nonzero ... ok [INFO] [stdout] test model::math::testing::test_determinant ... ok [INFO] [stdout] test model::logged_ols::testing::test_sorted_intersection ... ok [INFO] [stdout] test model::math::testing::test_inverse ... ok [INFO] [stdout] test model::sqmean::testing::test_sqmean ... ok [INFO] [stdout] test model::ols::testing::test_ols ... ok [INFO] [stdout] test norm::median_ratio_norm::testing::test_median_even ... ok [INFO] [stdout] test utils::config::testing::test_correction ... ok [INFO] [stdout] test utils::agg::testing::test_aggregate_fold_changes ... ok [INFO] [stdout] test utils::config::testing::test_aggregation ... ok [INFO] [stdout] test utils::config::testing::test_model_choice ... ok [INFO] [stdout] test utils::config::testing::test_normalization ... ok [INFO] [stdout] test utils::config::testing::test_prefix ... ok [INFO] [stdout] test utils::filter::testing::test_filtering ... ok [INFO] [stdout] test utils::math::testing::test_geometric_mean_unweighted ... ok [INFO] [stdout] test utils::filter::testing::test_filtering_controls ... ok [INFO] [stdout] test norm::median_ratio_norm::testing::test_median_error ... ok [INFO] [stdout] test utils::logging::testing::test_logger ... ok [INFO] [stdout] test utils::logging::testing::test_logger_quiet ... ok [INFO] [stdout] test norm::median_ratio_norm::testing::test_median_odd ... ok [INFO] [stdout] test utils::agg::testing::test_unique_indices ... ok [INFO] [stdout] test aggregation::results::testing::test_aggregation_result ... ok [INFO] [stdout] test utils::math::testing::test_geometric_mean_weighted ... ok [INFO] [stdout] test aggregation::testing::test_enum_gene_aggregation_inc ... ok [INFO] [stdout] test aggregation::testing::test_enum_gene_aggregation_rra ... ok [INFO] [stdout] test enrich::enrichment_testing::testing::test_select_controls ... ok [INFO] [stdout] test enrich::enrichment_testing::testing::test_row_median ... ok [INFO] [stdout] test norm::total_norm::testing::test_total_normalization ... ok [INFO] [stdout] test utils::math::testing::test_zscore ... ok [INFO] [stdout] test norm::median_ratio_norm::testing::test_median_normalization ... ok [INFO] [stdout] test model::ols::testing::test_ols_known_function ... ok [INFO] [stdout] test model::wols::testing::test_wls_known_function ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 70 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 27.41s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "99f0df9af5cddcd94b188b56475b8393ddde13115c84293a38c016bfeb76cff1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "99f0df9af5cddcd94b188b56475b8393ddde13115c84293a38c016bfeb76cff1", kill_on_drop: false }` [INFO] [stdout] 99f0df9af5cddcd94b188b56475b8393ddde13115c84293a38c016bfeb76cff1