[INFO] fetching crate thaf 0.0.3...
[INFO] testing thaf-0.0.3 against 1.90.0 for beta-1.91-3
[INFO] extracting crate thaf 0.0.3 into /workspace/builds/worker-0-tc1/source
[INFO] started tweaking crates.io crate thaf 0.0.3
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate thaf 0.0.3
[INFO] tweaked toml for crates.io crate thaf 0.0.3 written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate thaf 0.0.3 on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate thaf 0.0.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded enum-map-derive v0.17.0
[INFO] [stderr]   Downloaded enum-map v2.7.3
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded petgraph v0.8.2
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 858db10b083fef04062294e7319cf6f8ae31b941333a1291286dd5f027cde050
[INFO] running `Command { std: "docker" "start" "-a" "858db10b083fef04062294e7319cf6f8ae31b941333a1291286dd5f027cde050", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "858db10b083fef04062294e7319cf6f8ae31b941333a1291286dd5f027cde050", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "858db10b083fef04062294e7319cf6f8ae31b941333a1291286dd5f027cde050", kill_on_drop: false }`
[INFO] [stdout] 858db10b083fef04062294e7319cf6f8ae31b941333a1291286dd5f027cde050
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2658df0c225366114822478e3e43a806243cf2b6c78aa717e949f04708212e1f
[INFO] running `Command { std: "docker" "start" "-a" "2658df0c225366114822478e3e43a806243cf2b6c78aa717e949f04708212e1f", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling bytemuck v1.23.1
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustversion v1.0.21
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling indexmap v2.10.0
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling petgraph v0.8.2
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling clap_builder v4.5.41
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling simba v0.9.0
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling clap_derive v4.5.41
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling thiserror v2.0.12
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling clap v4.5.41
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling thaf v0.0.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 15s
[INFO] running `Command { std: "docker" "inspect" "2658df0c225366114822478e3e43a806243cf2b6c78aa717e949f04708212e1f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2658df0c225366114822478e3e43a806243cf2b6c78aa717e949f04708212e1f", kill_on_drop: false }`
[INFO] [stdout] 2658df0c225366114822478e3e43a806243cf2b6c78aa717e949f04708212e1f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f2368a7ef755d1ccc61f153c6a7d98e6a17336cc152b365809e8b965c35ff050
[INFO] running `Command { std: "docker" "start" "-a" "f2368a7ef755d1ccc61f153c6a7d98e6a17336cc152b365809e8b965c35ff050", kill_on_drop: false }`
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling rustix v1.0.7
[INFO] [stderr]    Compiling tempfile v3.20.0
[INFO] [stderr]    Compiling thaf v0.0.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 6.76s
[INFO] running `Command { std: "docker" "inspect" "f2368a7ef755d1ccc61f153c6a7d98e6a17336cc152b365809e8b965c35ff050", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f2368a7ef755d1ccc61f153c6a7d98e6a17336cc152b365809e8b965c35ff050", kill_on_drop: false }`
[INFO] [stdout] f2368a7ef755d1ccc61f153c6a7d98e6a17336cc152b365809e8b965c35ff050
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 7e4b209762645ed43b6c9fd16bbf0cf138ffc11c233ca58bd2c797e6f359f91f
[INFO] running `Command { std: "docker" "start" "-a" "7e4b209762645ed43b6c9fd16bbf0cf138ffc11c233ca58bd2c797e6f359f91f", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.17s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/thaf-6dd438b85d2a096b)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test transcript_builder::tests::test_build_transcripts_from_regions ... ok
[INFO] [stdout] test gff3::tests::test_parse_attributes_basic ... ok
[INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_minus ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_sort_minus ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_sort_plus ... ok
[INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_plus ... ok
[INFO] [stdout] test gff3::tests::test_parse_gff3_to_regions_simple ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_overlap_panic - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.09s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/thaf-83be58243bde08ec)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test gff3::tests::test_parse_attributes_basic ... ok
[INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_plus ... ok
[INFO] [stdout] test transcript_builder::tests::test_extract_transcript_sequence_minus ... ok
[INFO] [stdout] test gff3::tests::test_parse_gff3_to_regions_simple ... ok
[INFO] [stdout] test transcript_builder::tests::test_build_transcripts_from_regions ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_sort_minus ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_sort_plus ... ok
[INFO] [stdout] test transcript_builder::tests::test_transcript_overlap_panic - should panic ... ok
[INFO] [stderr]      Running tests/minitest.rs (/opt/rustwide/target/debug/deps/minitest-211579d67fb0ab23)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.12s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test minimal_transcript_extraction ... ok
[INFO] [stderr]    Doc-tests thaf
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "7e4b209762645ed43b6c9fd16bbf0cf138ffc11c233ca58bd2c797e6f359f91f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7e4b209762645ed43b6c9fd16bbf0cf138ffc11c233ca58bd2c797e6f359f91f", kill_on_drop: false }`
[INFO] [stdout] 7e4b209762645ed43b6c9fd16bbf0cf138ffc11c233ca58bd2c797e6f359f91f