[INFO] fetching crate rustybam 0.1.34... [INFO] testing rustybam-0.1.34 against 1.90.0 for beta-1.91-3 [INFO] extracting crate rustybam 0.1.34 into /workspace/builds/worker-1-tc1/source [INFO] removed /workspace/builds/worker-1-tc1/source/.cargo/config.toml [INFO] started tweaking crates.io crate rustybam 0.1.34 [INFO] finished tweaking crates.io crate rustybam 0.1.34 [INFO] tweaked toml for crates.io crate rustybam 0.1.34 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate rustybam 0.1.34 on toolchain 1.90.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate rustybam 0.1.34 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: file `/workspace/builds/worker-1-tc1/source/src/main.rs` found to be present in multiple build targets: [INFO] [stderr] * `bin` target `rb` [INFO] [stderr] * `bin` target `rustybam` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded needletail v0.5.1 [INFO] [stderr] Downloaded calmio_filters v0.1.0 [INFO] [stderr] Downloaded bio-io v0.3.2 [INFO] [stderr] Downloaded core_affinity v0.8.3 [INFO] [stderr] Downloaded clap_complete v3.2.5 [INFO] [stderr] Downloaded rust-htslib v0.44.1 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded libdeflater v0.12.0 [INFO] [stderr] Downloaded niffler v2.7.0 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded calm_io v0.1.1 [INFO] [stderr] Downloaded wide v0.7.32 [INFO] [stderr] Downloaded libdeflate-sys v0.12.0 [INFO] [stderr] Downloaded curl-sys v0.4.80+curl-8.12.1 [INFO] [stderr] Downloaded gzp v0.11.3 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6d30da87d949aaad68b471dcbe1a724825f1c8084e95d3e2b71e5be164062297 [INFO] running `Command { std: "docker" "start" "-a" "6d30da87d949aaad68b471dcbe1a724825f1c8084e95d3e2b71e5be164062297", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6d30da87d949aaad68b471dcbe1a724825f1c8084e95d3e2b71e5be164062297", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6d30da87d949aaad68b471dcbe1a724825f1c8084e95d3e2b71e5be164062297", kill_on_drop: false }` [INFO] [stdout] 6d30da87d949aaad68b471dcbe1a724825f1c8084e95d3e2b71e5be164062297 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c884ce277298b4ce08f1289c798e7b1895d2f8a0ba27bd8db1b00c61733cb5d7 [INFO] running `Command { std: "docker" "start" "-a" "c884ce277298b4ce08f1289c798e7b1895d2f8a0ba27bd8db1b00c61733cb5d7", kill_on_drop: false }` [INFO] [stderr] warning: file `/opt/rustwide/workdir/src/main.rs` found to be present in multiple build targets: [INFO] [stderr] * `bin` target `rb` [INFO] [stderr] * `bin` target `rustybam` [INFO] [stderr] Compiling libc v0.2.171 [INFO] [stderr] Compiling syn v2.0.100 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling zerocopy v0.8.24 [INFO] [stderr] Compiling rustversion v1.0.20 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling smallvec v1.15.0 [INFO] [stderr] Compiling bytemuck v1.22.0 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling miniz_oxide v0.8.8 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling os_str_bytes v6.6.1 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling clap_lex v0.2.4 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling textwrap v0.16.2 [INFO] [stderr] Compiling portable-atomic v1.11.0 [INFO] [stderr] Compiling percent-encoding v2.3.1 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling form_urlencoded v1.2.1 [INFO] [stderr] Compiling spin v0.9.8 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling jobserver v0.1.33 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling nanorand v0.7.0 [INFO] [stderr] Compiling cc v1.2.19 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling core_affinity v0.8.3 [INFO] [stderr] Compiling console v0.15.11 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling ordered-float v3.9.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling buffer-redux v1.0.2 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling strum v0.25.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling chrono v0.4.40 [INFO] [stderr] Compiling env_logger v0.9.3 [INFO] [stderr] Compiling bimap v0.6.3 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling openssl-src v300.5.0+3.5.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling natord v1.0.9 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Compiling openssl-sys v0.9.107 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling curl-sys v0.4.80+curl-8.12.1 [INFO] [stderr] Compiling libdeflate-sys v0.12.0 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling clap_derive v3.2.25 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling indicatif v0.17.11 [INFO] [stderr] Compiling calmio_filters v0.1.0 [INFO] [stderr] Compiling synstructure v0.13.1 [INFO] [stderr] Compiling calm_io v0.1.1 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling clap v3.2.25 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Compiling zerovec-derive v0.10.3 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling icu_provider_macros v1.5.0 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling pin-project-internal v1.1.10 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling libdeflater v0.12.0 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling pin-project v1.1.10 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling yoke v0.7.5 [INFO] [stderr] Compiling flume v0.10.14 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling zerovec v0.10.4 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling clap_complete v3.2.5 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling tinystr v0.7.6 [INFO] [stderr] Compiling icu_collections v1.5.0 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling icu_locid v1.5.0 [INFO] [stderr] Compiling rustybam v0.1.34 (/opt/rustwide/workdir) [INFO] [stderr] Compiling icu_provider v1.5.0 [INFO] [stderr] Compiling icu_locid_transform v1.5.0 [INFO] [stderr] Compiling icu_properties v1.5.1 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling multimap v0.9.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling icu_normalizer v1.5.0 [INFO] [stderr] Compiling idna_adapter v1.2.0 [INFO] [stderr] Compiling flate2 v1.1.1 [INFO] [stderr] Compiling idna v1.0.3 [INFO] [stderr] Compiling gzp v0.11.3 [INFO] [stderr] Compiling niffler v2.7.0 [INFO] [stderr] Compiling needletail v0.5.1 [INFO] [stderr] Compiling url v2.5.4 [INFO] [stderr] Compiling statrs v0.16.1 [INFO] [stderr] Compiling bio v1.6.0 [INFO] [stderr] Compiling rust-htslib v0.44.1 [INFO] [stderr] Compiling bio-io v0.3.2 [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:6:26 [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | ^^^^^ ----------------------- the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:10:26 [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | ^^^^^ ----------------------- the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/main.rs:206:60 [INFO] [stdout] | [INFO] [stdout] 206 | let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 206 - let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] 206 + let largest_rec = group.max_by_key(|p| p.t_en - p.t_st).unwrap(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/main.rs:206:60 [INFO] [stdout] | [INFO] [stdout] 206 | let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 206 - let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] 206 + let largest_rec = group.max_by_key(|p| p.t_en - p.t_st).unwrap(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 55s [INFO] running `Command { std: "docker" "inspect" "c884ce277298b4ce08f1289c798e7b1895d2f8a0ba27bd8db1b00c61733cb5d7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c884ce277298b4ce08f1289c798e7b1895d2f8a0ba27bd8db1b00c61733cb5d7", kill_on_drop: false }` [INFO] [stdout] c884ce277298b4ce08f1289c798e7b1895d2f8a0ba27bd8db1b00c61733cb5d7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2b1c82a118b03921fb2abd001255f4d9341c1409a7a18e7644d7fbd2e47f6f0f [INFO] running `Command { std: "docker" "start" "-a" "2b1c82a118b03921fb2abd001255f4d9341c1409a7a18e7644d7fbd2e47f6f0f", kill_on_drop: false }` [INFO] [stderr] warning: file `/opt/rustwide/workdir/src/main.rs` found to be present in multiple build targets: [INFO] [stderr] * `bin` target `rb` [INFO] [stderr] * `bin` target `rustybam` [INFO] [stderr] Compiling rustybam v0.1.34 (/opt/rustwide/workdir) [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:6:26 [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | ^^^^^ ----------------------- the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:10:26 [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | ^^^^^ ----------------------- the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/main.rs:206:60 [INFO] [stdout] | [INFO] [stdout] 206 | let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 206 - let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] 206 + let largest_rec = group.max_by_key(|p| p.t_en - p.t_st).unwrap(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/main.rs:206:60 [INFO] [stdout] | [INFO] [stdout] 206 | let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 206 - let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] 206 + let largest_rec = group.max_by_key(|p| p.t_en - p.t_st).unwrap(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:6:26 [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | ^^^^^ ----------------------- the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:10:26 [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | ^^^^^ ----------------------- the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 3.49s [INFO] running `Command { std: "docker" "inspect" "2b1c82a118b03921fb2abd001255f4d9341c1409a7a18e7644d7fbd2e47f6f0f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2b1c82a118b03921fb2abd001255f4d9341c1409a7a18e7644d7fbd2e47f6f0f", kill_on_drop: false }` [INFO] [stdout] 2b1c82a118b03921fb2abd001255f4d9341c1409a7a18e7644d7fbd2e47f6f0f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 6c17e80b06fd64535e771058a8564a73036274a993a2043e69e41502073deb2b [INFO] running `Command { std: "docker" "start" "-a" "6c17e80b06fd64535e771058a8564a73036274a993a2043e69e41502073deb2b", kill_on_drop: false }` [INFO] [stderr] warning: file `/opt/rustwide/workdir/src/main.rs` found to be present in multiple build targets: [INFO] [stderr] * `bin` target `rb` [INFO] [stderr] * `bin` target `rustybam` [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/annotate.rs:6:26 [INFO] [stderr] | [INFO] [stderr] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stderr] | ^^^^^ ----------------------- the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/annotate.rs:10:26 [INFO] [stderr] | [INFO] [stderr] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stderr] | ^^^^^ ----------------------- the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: `rustybam` (lib) generated 2 warnings [INFO] [stderr] warning: `rustybam` (lib test) generated 2 warnings (2 duplicates) [INFO] [stderr] warning: unnecessary parentheses around closure body [INFO] [stderr] --> src/main.rs:206:60 [INFO] [stderr] | [INFO] [stderr] 206 | let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stderr] | ^ ^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_parens)]` on by default [INFO] [stderr] help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] 206 - let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stderr] 206 + let largest_rec = group.max_by_key(|p| p.t_en - p.t_st).unwrap(); [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: `rustybam` (bin "rustybam" test) generated 1 warning (run `cargo fix --bin "rustybam" --tests` to apply 1 suggestion) [INFO] [stderr] warning: `rustybam` (bin "rb" test) generated 1 warning (1 duplicate) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.20s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rustybam-d2fdbdc615097735) [INFO] [stdout] [INFO] [stdout] running 8 tests [INFO] [stdout] test liftover::tests::check_invertible ... ok [INFO] [stdout] test bamstats::tests::test_add_cigar_stats ... ok [INFO] [stdout] test annotate::tests::test_chrom_specific_overlaps ... ok [INFO] [stdout] test suns::tests::test_convert ... ok [INFO] [stdout] test suns::tests::test_sun_finding ... ok [INFO] [stdout] test liftover::tests::test_aln_pair_liftover ... ok [INFO] [stdout] test trim_overlap::tests::test_inversion_trimming ... ok [INFO] [stdout] test bamstats::tests::test_cigar_stats_from_test_file ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/rb-acb04d6b6492cd01) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/rustybam-693889e29a8492ad) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests rustybam [INFO] [stdout] [INFO] [stdout] running 27 tests [INFO] [stdout] test src/paf.rs - paf::PafRecord::get_target_as_region (line 470) ... FAILED [INFO] [stdout] test src/myio.rs - myio::reader (line 38) ... FAILED [INFO] [stdout] test src/getfasta.rs - getfasta::get_fasta (line 12) ... FAILED [INFO] [stdout] test src/bed.rs - bed::has_overlap (line 49) ... FAILED [INFO] [stdout] test src/bed.rs - bed::parse_region (line 89) ... FAILED [INFO] [stdout] test src/liftover.rs - liftover::break_paf_on_indels (line 172) ... FAILED [INFO] [stdout] test src/nucfreq.rs - nucfreq::nucfreq (line 41) ... FAILED [INFO] [stdout] test src/fastx.rs - fastx::run_split_fastx (line 5) ... FAILED [INFO] [stdout] test src/paf.rs - paf::Paf::sam_header (line 309) ... FAILED [INFO] [stdout] test src/paf.rs - paf::PafRecord::new (line 372) ... FAILED [INFO] [stdout] test src/bed.rs - bed::parse_bed_rec (line 129) ... FAILED [INFO] [stdout] test src/paf.rs - paf::Paf::from_file (line 54) ... FAILED [INFO] [stdout] test src/nucfreq.rs - nucfreq::region_nucfreq (line 99) ... FAILED [INFO] [stdout] test src/paf.rs - paf::PafRecord::to_sam_string (line 861) ... FAILED [INFO] [stdout] test src/bamstats.rs - bamstats::parse_md_for_stats (line 39) ... FAILED [INFO] [stdout] test src/paf.rs - paf::cigar_from_str (line 1000) ... FAILED [INFO] [stdout] test src/bed.rs - bed::split_region (line 197) ... FAILED [INFO] [stdout] test src/bed.rs - bed::parse_bed (line 165) ... ok [INFO] [stdout] test src/paf.rs - paf::update_cigar_opt_len (line 978) ... ok [INFO] [stdout] test src/paf.rs - paf::consumes_query (line 953) ... ok [INFO] [stdout] test src/paf.rs - paf::is_match (line 966) ... ok [INFO] [stdout] test src/suns.rs - suns::Genome::convert_from_idx (line 144) ... ok [INFO] [stdout] test src/suns.rs - suns::Genome::from_file (line 50) ... ok [INFO] [stdout] test src/trim_overlap.rs - trim_overlap::trim_overlapping_pafs (line 22) ... ok [INFO] [stdout] test src/suns.rs - suns::Genome::get_longest_perfect_repeats (line 85) ... ok [INFO] [stdout] test src/paf.rs - paf::cs_to_cigar (line 1103) ... ok [INFO] [stdout] test src/suns.rs - suns::Genome::get_shortest_subseq_size (line 62) ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- src/paf.rs - paf::PafRecord::get_target_as_region (line 470) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustclZ0Ieu/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustclZ0Ieu/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestXM1hGV/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/myio.rs - myio::reader (line 38) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustczAX39I/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustczAX39I/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctest4JZSZ7/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/getfasta.rs - getfasta::get_fasta (line 12) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcx28XKz/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcx28XKz/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestJJzpcX/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/bed.rs - bed::has_overlap (line 49) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcr96pfO/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcr96pfO/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestqsZH1k/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/bed.rs - bed::parse_region (line 89) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcOvHzG8/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcOvHzG8/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestPoaf2p/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/liftover.rs - liftover::break_paf_on_indels (line 172) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcBG1KrM/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcBG1KrM/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctesteP07cS/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/nucfreq.rs - nucfreq::nucfreq (line 41) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcA6GO4s/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcA6GO4s/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctest0FAncB/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/fastx.rs - fastx::run_split_fastx (line 5) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcoz3riH/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcoz3riH/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctest3EwCgv/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/paf.rs - paf::Paf::sam_header (line 309) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcRmKiub/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcRmKiub/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestQMUvqy/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/paf.rs - paf::PafRecord::new (line 372) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcwlwmZL/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcwlwmZL/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestjIUAFM/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/bed.rs - bed::parse_bed_rec (line 129) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustc040mrD/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustc040mrD/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestHhT9HV/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/paf.rs - paf::Paf::from_file (line 54) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcqJJOeQ/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcqJJOeQ/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctest0sY6dN/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/nucfreq.rs - nucfreq::region_nucfreq (line 99) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcYOwRlW/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcYOwRlW/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestX8Or0i/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/paf.rs - paf::PafRecord::to_sam_string (line 861) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustc22UnoS/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustc22UnoS/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestLXdhzm/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/bamstats.rs - bamstats::parse_md_for_stats (line 39) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcA4SX1S/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcA4SX1S/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestTGVcBU/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/paf.rs - paf::cigar_from_str (line 1000) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustc13MM7g/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustc13MM7g/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestpMiLEa/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] ---- src/bed.rs - bed::split_region (line 197) stdout ---- [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustcngjIWp/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{librustybam-567e5db97c32e084,libnum_format-42ec84030586ed85,libarrayvec-7339f336323a9f9d,libnatord-147a1495cf75d09d,libneedletail-26c98f1c4be287ef,libbuffer_redux-055b90a21750e27a,libxz2-d3915da08006bf5f,libbzip2-df9170ea1a9394eb,libclap-ac907ec708eb904e,libatty-bec470a2bf6ce5ea,libstrsim-d159bff5f9d8c305,libtermcolor-8f179e788fdc4b43,libtextwrap-ccc63c51129446ac,libindexmap-9e0d698ea53bdb34,libhashbrown-ac9e50f61247ada6,libclap_lex-94e4a30e1748c324,libos_str_bytes-23b56d894975748e,libbitflags-3333d968e5f279ee,libbio_io-9396ff765b118e5c,liblog-c4dfdfda36928161,libniffler-c50be7e7bd8c1124,libthiserror-f64a42ffbc2d3a23,libindicatif-6a37f6a1016d5758,libportable_atomic-eaf3f0a003f51fa1,librayon-275f5f10ce3fd184,librayon_core-06a0f40288aeee64,libcrossbeam_deque-36370b15a39de502,libcrossbeam_epoch-55eb4ee0fd99d7f9,libcrossbeam_utils-98197786b8acd648,libnumber_prefix-3e2f4c7b9fa4f802,libconsole-965c581cb3772503,libunicode_width-413e00174b63117b,libonce_cell-65395029fac7f518,libgzp-d741ef950822d368,libcore_affinity-26f37648527e164d,libnum_cpus-c49314264c87b979,liblibdeflater-270e13b4d5b0cefc,liblibdeflate_sys-bbe3cd3581ad5f31,libsnap-7b0f2f48172e1472,libflume-30181d4ba3a0a911,libspin-25499fcf653e99cb,liblock_api-0c1a9d77f30394e6,libscopeguard-0e30e6315ecc2b6d,libpin_project-6896a2d736f8ee7f,libfutures_sink-5eca56bfb897a543,libfutures_core-e58de02987242b00,libnanorand-2763ec89f28ec512,libflate2-a50c2ee502efb154,libminiz_oxide-8329764a35b96b27,libadler2-fd247fe78d8c5ed7,libcrc32fast-9120768a38b567d5,libbytes-e08a006c583c3ac6,librust_htslib-7acca68659b11bc8,libieee754-60e2000e17500601,libhts_sys-2aafecafa771a76b,liblzma_sys-61421244aea80370,libcurl_sys-93a247e749fd2b04,libopenssl_sys-2f95fe6464535b36,liblibz_sys-da88b5d49dbfa568,libbzip2_sys-1edc94ab1c792d8e,liburl-633a7226cbdd1186,libidna-5217c75b22b728da,libidna_adapter-d8bf5afc78d95659,libicu_normalizer-f5d60d50da93ebc6,libicu_normalizer_data-b8d02a24dc646bd1,libwrite16-4c92f00e422f4b7b,libutf8_iter-311f0db35672adba,libutf16_iter-9805d00089650556,libsmallvec-5ac5d2ed13dcfee5,libicu_properties-e47351e327317291,libicu_properties_data-e97ec6d9ce4faa24,libicu_locid_transform-197ec5424b2b79e6,libicu_locid_transform_data-aab08896de490ac8,libicu_collections-f03db7236bb4e420,libicu_provider-a333fe2402f55746,libicu_locid-486aa580acbb1522,liblitemap-5d6ff1c38a537ea4,libtinystr-0bc4553655294f6c,libzerovec-620d767826e5bf32,libwriteable-763d6213d7786cb3,libyoke-6b5269ed61c41363,libzerofrom-4c9bdcd080507d23,libstable_deref_trait-1d3ea2e5b9aa129c,libform_urlencoded-28c18a8e012ebc37,libpercent_encoding-4d821e207fbc5c85,liblinear_map-d596f9554216bf54,libcolored-50eb4bc69c156198,libitertools-e777ac5b1359a873,libbio-8e6a29ff3c2abc3b,libstrum-db2ca17ca63a5b8b,libcsv-ab13666903c74171,libryu-3ba25d01f660afda,libitoa-a4ff8677f852b89f,libcsv_core-9225609c9ed951f5,libbytecount-6baf6b6951b01e31,libtriple_accel-090de8c9104d455a,libeditdistancek-8e2dd773c856610d,libitertools_num-3f5879a6ffe5dfc9,libenum_map-5a4c2c49b227b868,libstatrs-2649da85243a671d,libnalgebra-ee44231a23cf7bff,librand_distr-ef43bbb528f75431,libnum_rational-92be7b1eb60ac837,libtypenum-987523825771ddad,libsimba-e0ae3d5272f303f4,libwide-5ac9407129a5878e,libsafe_arch-8343e93929d4a038,libbytemuck-978220b94a6d208f,librand-3ed1efdff558c27d,librand_chacha-9d6654bf9fbe7073,libppv_lite86-68f3146f634f4fed,libzerocopy-0645bc4bd7bbc350,librand_core-5b9a7f175e3aaa01,libgetrandom-5dc1ffd9b6629bbe,liblibc-2196af57f154a156,libcfg_if-3183e62f61f23a61,libordered_float-75d8a386eb10a01d,libndarray-bca4ea0c79823234,libmatrixmultiply-019e0e5668445cba,libnum_complex-4f0c841a165f6df3,librawpointer-f73a58cd128df828,libmultimap-1bea3da78b8603c4,libitertools-b225b1d20e59a970,libeither-d34eb70c8ca3ae87,libanyhow-578b140c59529c2d,libnum_integer-be3ea1656379f3aa,libbv-9514e530f45415b7,libvec_map-1d9e51794bac3fef,libserde-c27a9ec967757206,libbit_set-32105092c1a55770,libbit_vec-84f9c1511ecea3bc,libbio_types-1ba8f0e3839349b8,libthiserror-a5e1257fff4f9602,libregex-ba469f9e544b175a,libregex_automata-0d682e30a3c5b961,libaho_corasick-c3edd29732527541,libmemchr-8483526b530fc45f,libregex_syntax-a2301440a5fca75a,libfxhash-4da70fad991848bc,libbyteorder-3f91e0f3212dbed5,libpetgraph-d6f548f3f51338bb,libindexmap-7e21ba80c3d0ffd2,libequivalent-bf2cc2d551c30568,libhashbrown-20e8734fc31efad8,libfixedbitset-7c18ab2348516bbe,libnewtype_derive-4c81d7c987eb5ade,liblazy_static-509a3481d98abb23,libcustom_derive-9dcd9871da8e8905,libapprox-289f5f8929f44bd1,libnum_traits-7d6ef474656b24f1}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcngjIWp/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-e299c5defe9fee5d/out/lib" "-L" "/opt/rustwide/target/debug/build/curl-sys-dd8f2ccb71b84f7e/out/build" "-L" "/opt/rustwide/target/debug/build/hts-sys-fe3b4eb2fe4d4f4a/out" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-49d5d4e24f1500e1/out/lib" "-L" "/opt/rustwide/target/debug/build/libz-sys-46e42fd82453a74e/out/lib" "-L" "/opt/rustwide/target/debug/build/lzma-sys-0a80b8f064f1b341/out" "-L" "/opt/rustwide/target/debug/build/openssl-sys-a5b20690791ad74b/out/openssl-build/install/lib" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestmbDMaY/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 9 [Killed] [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error [INFO] [stdout] [INFO] [stdout] Couldn't compile the test. [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] src/bamstats.rs - bamstats::parse_md_for_stats (line 39) [INFO] [stdout] src/bed.rs - bed::has_overlap (line 49) [INFO] [stdout] src/bed.rs - bed::parse_bed_rec (line 129) [INFO] [stdout] src/bed.rs - bed::parse_region (line 89) [INFO] [stdout] src/bed.rs - bed::split_region (line 197) [INFO] [stdout] src/fastx.rs - fastx::run_split_fastx (line 5) [INFO] [stdout] src/getfasta.rs - getfasta::get_fasta (line 12) [INFO] [stdout] src/liftover.rs - liftover::break_paf_on_indels (line 172) [INFO] [stdout] src/myio.rs - myio::reader (line 38) [INFO] [stdout] src/nucfreq.rs - nucfreq::nucfreq (line 41) [INFO] [stdout] src/nucfreq.rs - nucfreq::region_nucfreq (line 99) [INFO] [stdout] src/paf.rs - paf::Paf::from_file (line 54) [INFO] [stdout] src/paf.rs - paf::Paf::sam_header (line 309) [INFO] [stdout] src/paf.rs - paf::PafRecord::get_target_as_region (line 470) [INFO] [stdout] src/paf.rs - paf::PafRecord::new (line 372) [INFO] [stdout] src/paf.rs - paf::PafRecord::to_sam_string (line 861) [INFO] [stdout] src/paf.rs - paf::cigar_from_str (line 1000) [INFO] [stdout] [INFO] [stdout] test result: FAILED. 10 passed; 17 failed; 0 ignored; 0 measured; 0 filtered out; finished in 15.17s [INFO] [stdout] [INFO] [stderr] error: doctest failed, to rerun pass `--doc` [INFO] running `Command { std: "docker" "inspect" "6c17e80b06fd64535e771058a8564a73036274a993a2043e69e41502073deb2b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6c17e80b06fd64535e771058a8564a73036274a993a2043e69e41502073deb2b", kill_on_drop: false }` [INFO] [stdout] 6c17e80b06fd64535e771058a8564a73036274a993a2043e69e41502073deb2b