[INFO] fetching crate rdkit-rs 0.1.0... [INFO] testing rdkit-rs-0.1.0 against 1.90.0 for beta-1.91-3 [INFO] extracting crate rdkit-rs 0.1.0 into /workspace/builds/worker-0-tc1/source [INFO] started tweaking crates.io crate rdkit-rs 0.1.0 [INFO] finished tweaking crates.io crate rdkit-rs 0.1.0 [INFO] tweaked toml for crates.io crate rdkit-rs 0.1.0 written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate rdkit-rs 0.1.0 on toolchain 1.90.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 34 packages to latest compatible versions [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rdkit-ffi v0.1.0+rdkit-2022-09-1-pre [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a34f17022b463ebd6a815b7271d709f8241d26cbc8742875bd6f0f0a8a427630 [INFO] running `Command { std: "docker" "start" "-a" "a34f17022b463ebd6a815b7271d709f8241d26cbc8742875bd6f0f0a8a427630", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a34f17022b463ebd6a815b7271d709f8241d26cbc8742875bd6f0f0a8a427630", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a34f17022b463ebd6a815b7271d709f8241d26cbc8742875bd6f0f0a8a427630", kill_on_drop: false }` [INFO] [stdout] a34f17022b463ebd6a815b7271d709f8241d26cbc8742875bd6f0f0a8a427630 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 354893b02865712cf6c7f46111a8575b7d712296473b8db5ad99f04526e3e8f0 [INFO] running `Command { std: "docker" "start" "-a" "354893b02865712cf6c7f46111a8575b7d712296473b8db5ad99f04526e3e8f0", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.101 [INFO] [stderr] Compiling rustversion v1.0.22 [INFO] [stderr] Compiling equivalent v1.0.2 [INFO] [stderr] Compiling cxxbridge-flags v1.0.186 [INFO] [stderr] Compiling hashbrown v0.16.0 [INFO] [stderr] Compiling foldhash v0.2.0 [INFO] [stderr] Compiling link-cplusplus v1.0.12 [INFO] [stderr] Compiling cxx v1.0.186 [INFO] [stderr] Compiling indexmap v2.11.4 [INFO] [stderr] Compiling quote v1.0.41 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling cxxbridge-macro v1.0.186 [INFO] [stderr] Compiling rdkit-ffi v0.1.0+rdkit-2022-09-1-pre [INFO] [stderr] Compiling rdkit-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 16.64s [INFO] running `Command { std: "docker" "inspect" "354893b02865712cf6c7f46111a8575b7d712296473b8db5ad99f04526e3e8f0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "354893b02865712cf6c7f46111a8575b7d712296473b8db5ad99f04526e3e8f0", kill_on_drop: false }` [INFO] [stdout] 354893b02865712cf6c7f46111a8575b7d712296473b8db5ad99f04526e3e8f0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 36b0f846f8c164777fff5bb7279ce724632285bf139c3ca2649c0e9e0ae7ec5f [INFO] running `Command { std: "docker" "start" "-a" "36b0f846f8c164777fff5bb7279ce724632285bf139c3ca2649c0e9e0ae7ec5f", kill_on_drop: false }` [INFO] [stderr] Compiling rdkit-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/tmp/rustc1yV9EG/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libtest-*,libgetopts-*,libunicode_width-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/debug/deps/{librdkit_ffi-d55a9adcda255577,libcxx-09e7d3300eed918d,libfoldhash-c9db0e3757620e59,liblink_cplusplus-5f6046bb34764198}.rlib" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lstdc++" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustc1yV9EG/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/cxx-b91b87c602f93eaf/out" "-L" "/opt/rustwide/target/debug/build/link-cplusplus-698a0bf94476e4eb/out" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/rdkit_rs-7566f961b3d43a2b" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: rust-lld: error: undefined symbol: RDKit$cxxbridge1$SmilesParse_smi_to_mol [INFO] [stdout] >>> referenced by lib.rs:7 (src/lib.rs:7) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(rdkit_ffi::rd::SmilesParse_smi_to_mol::hfc2928988f55882b) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$RWMol_get_num_atoms [INFO] [stdout] >>> referenced by lib.rs:11 (src/lib.rs:11) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_atoms::hd2d6a19de667435b) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$RWMol_get_num_heavy_atoms [INFO] [stdout] >>> referenced by lib.rs:12 (src/lib.rs:12) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_heavy_atoms::h0c6516e2ad025b39) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$RWMol_get_num_bonds [INFO] [stdout] >>> referenced by lib.rs:13 (src/lib.rs:13) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(rdkit_ffi::rd::RWMol_get_num_bonds::hcdf9118569ec51a9) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$ROMolPtrVec_new [INFO] [stdout] >>> referenced by lib.rs:15 (src/lib.rs:15) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(rdkit_ffi::rd::ROMolPtrVec_new::h32f74c30fcdfca15) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$ROMolPtrVec_emplace_back [INFO] [stdout] >>> referenced by lib.rs:16 (src/lib.rs:16) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(rdkit_ffi::rd::ROMolPtrVec_emplace_back::hd97aa8e268ce5c1e) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MorganFP_get_fingerprint [INFO] [stdout] >>> referenced by lib.rs:22 (src/lib.rs:22) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(rdkit_ffi::rd::MorganFP_get_fingerprint::h73420e0142a0d6b8) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MorganFP_get_nonzero_elements_size [INFO] [stdout] >>> referenced by lib.rs:23 (src/lib.rs:23) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(rdkit_ffi::rd::MorganFP_get_nonzero_elements_size::h7cb1a29b54560cd5) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$FMCS_find_mcs [INFO] [stdout] >>> referenced by lib.rs:27 (src/lib.rs:27) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(rdkit_ffi::rd::FMCS_find_mcs::hc1b7d6497411b9f7) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MCSResult_num_atoms [INFO] [stdout] >>> referenced by lib.rs:28 (src/lib.rs:28) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_num_atoms::h95cce0961e6254fb) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MCSResult_num_bonds [INFO] [stdout] >>> referenced by lib.rs:29 (src/lib.rs:29) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_num_bonds::h6652ae326a390463) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: RDKit$cxxbridge1$MCSResult_smarts_string [INFO] [stdout] >>> referenced by lib.rs:30 (src/lib.rs:30) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(rdkit_ffi::rd::MCSResult_smarts_string::hce0558ac2c267207) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$shared_ptr$RDKit$RWMol$drop [INFO] [stdout] >>> referenced by lib.rs:7 (src/lib.rs:7) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..RWMol$u20$as$u20$cxx..shared_ptr..SharedPtrTarget$GT$::__drop::h067c82fc0673a44b) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$ROMolPtrVec$raw [INFO] [stdout] >>> referenced by lib.rs:15 (src/lib.rs:15) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..ROMolPtrVec$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__raw::h0bc773a8c8c3e5f5) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$ROMolPtrVec$drop [INFO] [stdout] >>> referenced by lib.rs:15 (src/lib.rs:15) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..ROMolPtrVec$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__drop::h6387387f7c33f36a) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MorganFingerprint$raw [INFO] [stdout] >>> referenced by lib.rs:22 (src/lib.rs:22) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MorganFingerprint$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__raw::h2faacf4f380e5e58) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MorganFingerprint$drop [INFO] [stdout] >>> referenced by lib.rs:22 (src/lib.rs:22) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MorganFingerprint$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__drop::h60ba0660ad030f7d) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MCSResult$raw [INFO] [stdout] >>> referenced by lib.rs:27 (src/lib.rs:27) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MCSResult$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__raw::h3f78725939cde835) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] [INFO] [stdout] rust-lld: error: undefined symbol: cxxbridge1$unique_ptr$RDKit$MCSResult$drop [INFO] [stdout] >>> referenced by lib.rs:27 (src/lib.rs:27) [INFO] [stdout] >>> rdkit_ffi-d55a9adcda255577.rdkit_ffi.88dc21036d04a4e0-cgu.0.rcgu.o:(_$LT$rdkit_ffi..rd..MCSResult$u20$as$u20$cxx..unique_ptr..UniquePtrTarget$GT$::__drop::h55fe6c5b3c734edb) in archive /opt/rustwide/target/debug/deps/librdkit_ffi-d55a9adcda255577.rlib [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `rdkit-rs` (lib test) due to 1 previous error [INFO] running `Command { std: "docker" "inspect" "36b0f846f8c164777fff5bb7279ce724632285bf139c3ca2649c0e9e0ae7ec5f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "36b0f846f8c164777fff5bb7279ce724632285bf139c3ca2649c0e9e0ae7ec5f", kill_on_drop: false }` [INFO] [stdout] 36b0f846f8c164777fff5bb7279ce724632285bf139c3ca2649c0e9e0ae7ec5f