[INFO] fetching crate psdm 0.3.0...
[INFO] testing psdm-0.3.0 against 1.90.0 for beta-1.91-3
[INFO] extracting crate psdm 0.3.0 into /workspace/builds/worker-1-tc1/source
[INFO] started tweaking crates.io crate psdm 0.3.0
[INFO] finished tweaking crates.io crate psdm 0.3.0
[INFO] tweaked toml for crates.io crate psdm 0.3.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate psdm 0.3.0 on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate psdm 0.3.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded memoffset v0.6.4
[INFO] [stderr]   Downloaded getrandom v0.2.3
[INFO] [stderr]   Downloaded rand_hc v0.3.1
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[INFO] [stderr]   Downloaded itertools v0.10.1
[INFO] [stderr]   Downloaded serde v1.0.185
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[INFO] [stderr]   Downloaded matrixmultiply v0.3.1
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[INFO] [stderr]   Downloaded clap v3.1.18
[INFO] [stderr]   Downloaded noodles-bgzf v0.31.0
[INFO] [stderr]   Downloaded syn v1.0.81
[INFO] [stderr]   Downloaded env_logger v0.11.3
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[INFO] [stderr]   Downloaded num-complex v0.4.0
[INFO] [stderr]   Downloaded libc v0.2.105
[INFO] [stderr]   Downloaded xz2 v0.1.6
[INFO] [stderr]   Downloaded niffler v2.3.2
[INFO] [stderr]   Downloaded crc32fast v1.2.1
[INFO] [stderr]   Downloaded bstr v1.9.1
[INFO] [stderr]   Downloaded noodles-fasta v0.40.0
[INFO] [stderr]   Downloaded termtree v0.2.3
[INFO] [stderr]   Downloaded predicates-tree v1.0.4
[INFO] [stderr]   Downloaded env_filter v0.1.0
[INFO] [stderr]   Downloaded noodles-core v0.15.0
[INFO] [stderr]   Downloaded clap_derive v3.1.18
[INFO] [stderr]   Downloaded os_str_bytes v6.1.0
[INFO] [stderr]   Downloaded bgzip v0.2.1
[INFO] [stderr]   Downloaded pkg-config v0.3.22
[INFO] [stderr]   Downloaded crossbeam-epoch v0.9.5
[INFO] [stderr]   Downloaded rand v0.8.4
[INFO] [stderr]   Downloaded lzma-sys v0.1.17
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f7a5effe7c21696199bc05e43ce8f7042f0ee6b214cb565a134f10f500c68b8a
[INFO] running `Command { std: "docker" "start" "-a" "f7a5effe7c21696199bc05e43ce8f7042f0ee6b214cb565a134f10f500c68b8a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f7a5effe7c21696199bc05e43ce8f7042f0ee6b214cb565a134f10f500c68b8a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f7a5effe7c21696199bc05e43ce8f7042f0ee6b214cb565a134f10f500c68b8a", kill_on_drop: false }`
[INFO] [stdout] f7a5effe7c21696199bc05e43ce8f7042f0ee6b214cb565a134f10f500c68b8a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] dfbc9c72f0301c8ccbf85494efb7406f59b5e259f6d03f1ee9f4a2753acd5c35
[INFO] running `Command { std: "docker" "start" "-a" "dfbc9c72f0301c8ccbf85494efb7406f59b5e259f6d03f1ee9f4a2753acd5c35", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.105
[INFO] [stderr]    Compiling proc-macro2 v1.0.32
[INFO] [stderr]    Compiling cc v1.0.71
[INFO] [stderr]    Compiling syn v1.0.81
[INFO] [stderr]    Compiling pkg-config v0.3.22
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling portable-atomic v1.6.0
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling anstyle-parse v0.2.4
[INFO] [stderr]    Compiling crossbeam-channel v0.5.13
[INFO] [stderr]    Compiling bstr v1.9.1
[INFO] [stderr]    Compiling bytes v1.6.0
[INFO] [stderr]    Compiling colorchoice v1.0.1
[INFO] [stderr]    Compiling os_str_bytes v6.1.0
[INFO] [stderr]    Compiling log v0.4.21
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling anyhow v1.0.44
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.0
[INFO] [stderr]    Compiling anstyle-query v1.1.0
[INFO] [stderr]    Compiling quote v1.0.10
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling anstream v0.6.14
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling console v0.15.8
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.1
[INFO] [stderr]    Compiling noodles-core v0.15.0
[INFO] [stderr]    Compiling clap_lex v0.2.0
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-complex v0.4.0
[INFO] [stderr]    Compiling noodles-bgzf v0.31.0
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling xz2 v0.1.6
[INFO] [stderr]    Compiling noodles-fasta v0.40.0
[INFO] [stderr]    Compiling ndarray v0.15.3
[INFO] [stderr]    Compiling bzip2 v0.4.3
[INFO] [stderr]    Compiling env_filter v0.1.0
[INFO] [stderr]    Compiling env_logger v0.11.3
[INFO] [stderr]    Compiling indicatif v0.17.8
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling clap_derive v3.1.18
[INFO] [stderr]    Compiling thiserror v1.0.30
[INFO] [stderr]    Compiling bgzip v0.2.1
[INFO] [stderr]    Compiling niffler v2.3.2
[INFO] [stderr]    Compiling clap v3.1.18
[INFO] [stderr]    Compiling psdm v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 21.61s
[INFO] running `Command { std: "docker" "inspect" "dfbc9c72f0301c8ccbf85494efb7406f59b5e259f6d03f1ee9f4a2753acd5c35", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dfbc9c72f0301c8ccbf85494efb7406f59b5e259f6d03f1ee9f4a2753acd5c35", kill_on_drop: false }`
[INFO] [stdout] dfbc9c72f0301c8ccbf85494efb7406f59b5e259f6d03f1ee9f4a2753acd5c35
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 06dde2eeccf3e904fdb521c02386d51f7854ee37e2d82272ba8b7701ac9f9139
[INFO] running `Command { std: "docker" "start" "-a" "06dde2eeccf3e904fdb521c02386d51f7854ee37e2d82272ba8b7701ac9f9139", kill_on_drop: false }`
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling predicates-core v1.0.2
[INFO] [stderr]    Compiling ppv-lite86 v0.2.15
[INFO] [stderr]    Compiling itertools v0.10.1
[INFO] [stderr]    Compiling termtree v0.2.3
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling predicates-tree v1.0.4
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling predicates v2.0.3
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling assert_cmd v2.0.2
[INFO] [stderr]    Compiling psdm v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 5.32s
[INFO] running `Command { std: "docker" "inspect" "06dde2eeccf3e904fdb521c02386d51f7854ee37e2d82272ba8b7701ac9f9139", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "06dde2eeccf3e904fdb521c02386d51f7854ee37e2d82272ba8b7701ac9f9139", kill_on_drop: false }`
[INFO] [stdout] 06dde2eeccf3e904fdb521c02386d51f7854ee37e2d82272ba8b7701ac9f9139
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] bed9acd91cc64aa5bf590f1618a3753a8528818ec529b1b274eebf143c38103b
[INFO] running `Command { std: "docker" "start" "-a" "bed9acd91cc64aa5bf590f1618a3753a8528818ec529b1b274eebf143c38103b", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.13s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/psdm-0903597cc655fe25)
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test tests::alignments_do_not_all_have_same_length ... ok
[INFO] [stdout] test tests::alignments_sorted_by_id ... ok
[INFO] [stdout] test tests::argsort ... ok
[INFO] [stdout] test tests::alignments_do_not_have_same_length_as_starting_seqlen ... ok
[INFO] [stdout] test tests::alignments_all_have_same_length ... ok
[INFO] [stdout] test tests::parse_chars ... ok
[INFO] [stdout] test tests::sort_by_index ... ok
[INFO] [stdout] test tests::transform_ignore_chars ... ok
[INFO] [stdout] test tests::transform_preserve_case ... ok
[INFO] [stdout] test tests::test_hamming_distance ... ok
[INFO] [stdout] test tests::transform_ignore_case ... ok
[INFO] [stdout] test tests::transform_ignore_chars_case_insensitive ... ok
[INFO] [stdout] test tests::argsort_with_str ... ok
[INFO] [stdout] test tests::argsort_on_empty ... ok
[INFO] [stdout] test tests::transform_ignore_chars_case_sensitive ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.08s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/psdm-0c474e123f3591da)
[INFO] [stderr]      Running tests/main.rs (/opt/rustwide/target/debug/deps/main-10b5901a5347576e)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test tests::check_path_exists_it_doesnt ... ok
[INFO] [stdout] test tests::check_path_it_does ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test intra_alignment_with_defaults_long_form ... ok
[INFO] [stdout] test alignment_is_not_fasta ... ok
[INFO] [stdout] test more_than_two_input_files_fails ... ok
[INFO] [stdout] test intra_alignment_with_ignore_case_ignore_characters_sorted ... ok
[INFO] [stdout] test trying_to_create_output_in_nonexistent_dir ... ok
[INFO] [stdout] test intra_alignment_with_defaults ... ok
[INFO] [stdout] test inter_alignment_with_tab_delim ... ok
[INFO] [stdout] test intra_alignment_with_ignore_case_ignore_characters ... ok
[INFO] [stdout] test intra_alignment_with_use_case_ignore_characters ... ok
[INFO] [stdout] test alignment_files_do_not_have_same_length ... ok
[INFO] [stdout] test input_file_does_not_exist ... ok
[INFO] [stdout] test intra_alignment_with_defaults_long_form_sorted ... ok
[INFO] [stdout] test intra_alignment_with_ignore_case_ignore_no_characters ... ok
[INFO] [stdout] test inter_alignment_in_long_form_sorted ... ok
[INFO] [stdout] test alignment_seqs_do_not_have_same_length ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.10s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests psdm
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "bed9acd91cc64aa5bf590f1618a3753a8528818ec529b1b274eebf143c38103b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bed9acd91cc64aa5bf590f1618a3753a8528818ec529b1b274eebf143c38103b", kill_on_drop: false }`
[INFO] [stdout] bed9acd91cc64aa5bf590f1618a3753a8528818ec529b1b274eebf143c38103b