[INFO] fetching crate phylotree 0.1.3...
[INFO] testing phylotree-0.1.3 against 1.90.0 for beta-1.91-3
[INFO] extracting crate phylotree 0.1.3 into /workspace/builds/worker-4-tc1/source
[INFO] removed /workspace/builds/worker-4-tc1/source/.cargo/config.toml
[INFO] started tweaking crates.io crate phylotree 0.1.3
[INFO] finished tweaking crates.io crate phylotree 0.1.3
[INFO] tweaked toml for crates.io crate phylotree 0.1.3 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate phylotree 0.1.3 on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate phylotree 0.1.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0337266e87e8fd6e2cf90017ffb8d2a0f8f14e5bc2b65c36767e33eea59c06a9
[INFO] running `Command { std: "docker" "start" "-a" "0337266e87e8fd6e2cf90017ffb8d2a0f8f14e5bc2b65c36767e33eea59c06a9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0337266e87e8fd6e2cf90017ffb8d2a0f8f14e5bc2b65c36767e33eea59c06a9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0337266e87e8fd6e2cf90017ffb8d2a0f8f14e5bc2b65c36767e33eea59c06a9", kill_on_drop: false }`
[INFO] [stdout] 0337266e87e8fd6e2cf90017ffb8d2a0f8f14e5bc2b65c36767e33eea59c06a9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e19d5c5b0edee5d4aff97e460cab368e2a289fbc76f975dac30e2252cda51480
[INFO] running `Command { std: "docker" "start" "-a" "e19d5c5b0edee5d4aff97e460cab368e2a289fbc76f975dac30e2252cda51480", kill_on_drop: false }`
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[INFO] [stderr]    Compiling ptree v0.4.0
[INFO] [stderr]    Compiling phylotree v0.1.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 41.86s
[INFO] running `Command { std: "docker" "inspect" "e19d5c5b0edee5d4aff97e460cab368e2a289fbc76f975dac30e2252cda51480", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e19d5c5b0edee5d4aff97e460cab368e2a289fbc76f975dac30e2252cda51480", kill_on_drop: false }`
[INFO] [stdout] e19d5c5b0edee5d4aff97e460cab368e2a289fbc76f975dac30e2252cda51480
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9f59ab3ad4d69b373f0cd2a47512086853c25c89a6b2f4eb1374a8e085623c5c
[INFO] running `Command { std: "docker" "start" "-a" "9f59ab3ad4d69b373f0cd2a47512086853c25c89a6b2f4eb1374a8e085623c5c", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.164
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[INFO] [stderr]    Compiling clap v3.2.25
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[INFO] [stderr]    Compiling rand_distr v0.4.3
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[INFO] [stderr]    Compiling serde_json v1.0.96
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[INFO] [stderr]    Compiling ciborium v0.2.0
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling criterion v0.4.0
[INFO] [stderr]    Compiling config v0.11.0
[INFO] [stderr]    Compiling ptree v0.4.0
[INFO] [stderr]    Compiling phylotree v0.1.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 17.89s
[INFO] running `Command { std: "docker" "inspect" "9f59ab3ad4d69b373f0cd2a47512086853c25c89a6b2f4eb1374a8e085623c5c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9f59ab3ad4d69b373f0cd2a47512086853c25c89a6b2f4eb1374a8e085623c5c", kill_on_drop: false }`
[INFO] [stdout] 9f59ab3ad4d69b373f0cd2a47512086853c25c89a6b2f4eb1374a8e085623c5c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 03a9e2f99d6de2e6cbe72655427d85a300b5b86c902dd06182982436cd0187b3
[INFO] running `Command { std: "docker" "start" "-a" "03a9e2f99d6de2e6cbe72655427d85a300b5b86c902dd06182982436cd0187b3", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.24s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/phylotree-fdf7451f396dd579)
[INFO] [stdout] 
[INFO] [stdout] running 52 tests
[INFO] [stdout] test distance::tests::from_phylip_tril_errors ... ok
[INFO] [stdout] test distance::tests::build_upgma ... ok
[INFO] [stdout] test distance::tests::from_phylip_strict_errors ... ok
[INFO] [stdout] test distance::tests::index_conversions ... ok
[INFO] [stdout] test tree::tree_impl::tests::get_correct_leaves ... ok
[INFO] [stdout] test tree::tree_impl::tests::compute_distance_matrix ... ok
[INFO] [stdout] test tree::tree_impl::tests::get_distances_lengths ... ok
[INFO] [stdout] test tree::tree_impl::tests::binary_from_newick ... ok
[INFO] [stdout] test tree::tree_impl::tests::manual_colless ... ok
[INFO] [stdout] test tree::tree_impl::tests::last_common_ancestor ... ok
[INFO] [stdout] test distance::tests::test_to_phylip ... ok
[INFO] [stdout] test tree::tree_impl::tests::prune_tree ... ok
[INFO] [stdout] test tree::tree_impl::tests::test_binary ... ok
[INFO] [stdout] test tree::tree_impl::tests::read_newick_fails ... ok
[INFO] [stdout] test tree::tree_impl::tests::test_cherries ... ok
[INFO] [stdout] test tree::tree_impl::tests::test_colless_rooted ... ok
[INFO] [stdout] test distance::tests::from_phylip ... ok
[INFO] [stdout] test tree::tree_impl::tests::test_compress ... ok
[INFO] [stdout] test tree::tree_impl::tests::test_height ... ok
[INFO] [stdout] test tree::tree_impl::tests::test_descendants ... ok
[INFO] [stdout] test tree::tree_impl::tests::rooted_vs_unrooted_partitions ... ok
[INFO] [stdout] test tree::tree_impl::tests::path_from_root ... ok
[INFO] [stdout] test tree::tree_impl::tests::read_newick ... ok
[INFO] [stdout] test tree::tree_impl::tests::test_diam ... ok
[INFO] [stdout] test tree::tree_impl::tests::test_rescale ... ok
[INFO] [stdout] test tree::tree_impl::tests::self_rf ... ok
[INFO] [stdout] test tree::tree_impl::tests::test_tips ... ok
[INFO] [stdout] test tree::tree_impl::tests::test_unique_tip_names ... ok
[INFO] [stdout] test tree::tree_impl::tests::to_formatted_newick ... ok
[INFO] [stdout] test tree::tree_impl::tests::to_newick ... ok
[INFO] [stdout] test tree::tree_impl::tests::to_nexus ... ignored
[INFO] [stdout] test tree::tree_impl::tests_ete3::compare ... ignored
[INFO] [stdout] test tree::tree_impl::tests_ete3::edge_distances ... ok
[INFO] [stdout] test tree::tree_impl::tests_ete3::export_ordered_features ... ignored
[INFO] [stdout] test tree::tree_impl::tests_ete3::parse_single_node_trees ... ignored
[INFO] [stdout] test tree::tree_impl::tests_ete3::parse_full_nhx ... ok
[INFO] [stdout] test tree::tree_impl::tests_ete3::parse_weird_topologies ... ok
[INFO] [stdout] test tree::tree_impl::tests_ete3::traversals ... ok
[INFO] [stdout] test tree::tree_impl::tests::test_get_partitions ... ok
[INFO] [stdout] test tree::tree_impl::tests::test_sackin_rooted ... ok
[INFO] [stdout] test tree::tree_impl::tests_ete3::resolve_polytomies ... ok
[INFO] [stdout] test tree::tree_impl::tests::test_sackin_unrooted ... ok
[INFO] [stdout] test tree::tree_impl::tests_ete3::topological_distances ... ok
[INFO] [stdout] test tree::tree_impl::tests_ete3::parse_with_features ... ok
[INFO] [stdout] test tree::tree_impl::tests::test_subtree_leaves ... ok
[INFO] [stdout] test distance::tests::min_max ... ok
[INFO] [stdout] test tree::tree_impl::tests_ete3::parse_complex_newick ... ok
[INFO] [stdout] test distance::tests::iterators ... ok
[INFO] [stdout] test tree::tree_impl::tests::khuner_felsenstein_treedist ... ok
[INFO] [stdout] test tree::tree_impl::tests::weighted_robinson_foulds_treedist ... ok
[INFO] [stdout] test tree::tree_impl::tests::new_vs_old ... ok
[INFO] [stdout] test tree::tree_impl::tests::robinson_foulds_treedist ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 48 passed; 0 failed; 4 ignored; 0 measured; 0 filtered out; finished in 0.09s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/phylotree/main.rs (/opt/rustwide/target/debug/deps/phylotree-cafcf861a300fdae)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests phylotree
[INFO] [stdout] 
[INFO] [stdout] running 37 tests
[INFO] [stdout] test src/lib.rs - (line 121) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::from_newick (line 1963) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::get_by_name (line 244) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::compare_topologies (line 1102) ... ok
[INFO] [stdout] test src/lib.rs - (line 32) ... ok
[INFO] [stdout] test src/lib.rs - (line 55) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::distance_matrix (line 1523) ... ok
[INFO] [stdout] test src/tree/node.rs - tree::node::Node::add_child (line 130) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::diameter (line 640) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::compare_branch_lengths (line 1182) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::get_common_ancestor (line 1346) ... ok
[INFO] [stdout] test src/lib.rs - (line 101) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::compress (line 1704) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::add_child (line 169) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::get_leaf_names (line 321) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::get_path_from_root (line 1318) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::get_distance (line 1383) ... ok
[INFO] [stdout] test src/lib.rs - (line 69) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::distance_matrix_recursive (line 1481) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::length (line 666) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::inorder (line 477) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::get_descendants (line 368) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::get_subtree_leaves (line 393) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::height (line 609) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::get_leaves (line 302) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::preorder (line 427) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::merge_children (line 1839) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::postorder (line 451) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::rescale (line 1730) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::get_subtree (line 343) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::resolve (line 1750) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::levelorder (line 520) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::ladderize (line 1795) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::to_formatted_newick (line 1940) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::search_nodes (line 267) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::prune (line 1649) ... ok
[INFO] [stdout] test src/tree/tree_impl.rs - tree::tree_impl::Tree::to_newick (line 1924) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 37 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 5.71s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "03a9e2f99d6de2e6cbe72655427d85a300b5b86c902dd06182982436cd0187b3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "03a9e2f99d6de2e6cbe72655427d85a300b5b86c902dd06182982436cd0187b3", kill_on_drop: false }`
[INFO] [stdout] 03a9e2f99d6de2e6cbe72655427d85a300b5b86c902dd06182982436cd0187b3