[INFO] fetching crate phylodm 3.2.0...
[INFO] testing phylodm-3.2.0 against 1.90.0 for beta-1.91-3
[INFO] extracting crate phylodm 3.2.0 into /workspace/builds/worker-0-tc1/source
[INFO] removed /workspace/builds/worker-0-tc1/source/.cargo/config.toml
[INFO] started tweaking crates.io crate phylodm 3.2.0
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate phylodm 3.2.0
[INFO] tweaked toml for crates.io crate phylodm 3.2.0 written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate phylodm 3.2.0 on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate phylodm 3.2.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded unindent v0.2.3
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[INFO] [stderr]   Downloaded pyo3 v0.21.2
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[INFO] [stderr]   Downloaded anstyle-parse v0.2.5
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[INFO] [stderr]   Downloaded anstyle v1.0.8
[INFO] [stderr]   Downloaded random_color v0.8.0
[INFO] [stderr]   Downloaded target-lexicon v0.12.16
[INFO] [stderr]   Downloaded regex-automata v0.4.8
[INFO] [stderr]   Downloaded light_phylogeny v2.4.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] fb1524b69b04abb9a24530f1286b5b2bb6b9eaee4fc16a8fd283a3cd3f972e29
[INFO] running `Command { std: "docker" "start" "-a" "fb1524b69b04abb9a24530f1286b5b2bb6b9eaee4fc16a8fd283a3cd3f972e29", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "fb1524b69b04abb9a24530f1286b5b2bb6b9eaee4fc16a8fd283a3cd3f972e29", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fb1524b69b04abb9a24530f1286b5b2bb6b9eaee4fc16a8fd283a3cd3f972e29", kill_on_drop: false }`
[INFO] [stdout] fb1524b69b04abb9a24530f1286b5b2bb6b9eaee4fc16a8fd283a3cd3f972e29
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6292dc8ff352519d4202992d39eb9a864bdd2e8bc07701fed9ddcc05f88d865e
[INFO] running `Command { std: "docker" "start" "-a" "6292dc8ff352519d4202992d39eb9a864bdd2e8bc07701fed9ddcc05f88d865e", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.87
[INFO] [stderr]    Compiling unicode-ident v1.0.13
[INFO] [stderr]    Compiling libc v0.2.159
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling version_check v0.9.5
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling unicode-segmentation v1.12.0
[INFO] [stderr]    Compiling unicode-width v0.1.14
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling colorchoice v1.0.2
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling anstyle-parse v0.2.5
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling anstyle v1.0.8
[INFO] [stderr]    Compiling anstyle-query v1.1.1
[INFO] [stderr]    Compiling log v0.4.22
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling roxmltree v0.19.0
[INFO] [stderr]    Compiling svg v0.15.1
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling getopt v1.1.7
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling anstream v0.6.15
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling syn v2.0.79
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling regex-automata v0.4.8
[INFO] [stderr]    Compiling ndarray v0.15.6
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling derive_more-impl v1.0.0
[INFO] [stderr]    Compiling zerocopy v0.7.35
[INFO] [stderr]    Compiling ppv-lite86 v0.2.20
[INFO] [stderr]    Compiling derive_more v1.0.0
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling structopt v0.3.26
[INFO] [stderr]    Compiling random_color v0.8.0
[INFO] [stderr]    Compiling regex v1.11.0
[INFO] [stderr]    Compiling env_filter v0.1.2
[INFO] [stderr]    Compiling env_logger v0.11.5
[INFO] [stderr]    Compiling light_phylogeny v2.4.1
[INFO] [stderr]    Compiling phylodm v3.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 23.70s
[INFO] running `Command { std: "docker" "inspect" "6292dc8ff352519d4202992d39eb9a864bdd2e8bc07701fed9ddcc05f88d865e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6292dc8ff352519d4202992d39eb9a864bdd2e8bc07701fed9ddcc05f88d865e", kill_on_drop: false }`
[INFO] [stdout] 6292dc8ff352519d4202992d39eb9a864bdd2e8bc07701fed9ddcc05f88d865e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7304e61e69c1d03801341adc85bdeb4be102194518a177c6cb01aff991eb8e50
[INFO] running `Command { std: "docker" "start" "-a" "7304e61e69c1d03801341adc85bdeb4be102194518a177c6cb01aff991eb8e50", kill_on_drop: false }`
[INFO] [stderr]    Compiling phylodm v3.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.05s
[INFO] running `Command { std: "docker" "inspect" "7304e61e69c1d03801341adc85bdeb4be102194518a177c6cb01aff991eb8e50", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7304e61e69c1d03801341adc85bdeb4be102194518a177c6cb01aff991eb8e50", kill_on_drop: false }`
[INFO] [stdout] 7304e61e69c1d03801341adc85bdeb4be102194518a177c6cb01aff991eb8e50
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 2d9400e9b9201a2625bc326c38c4672bf541ebf50f41890f6be0206a2d6c8847
[INFO] running `Command { std: "docker" "start" "-a" "2d9400e9b9201a2625bc326c38c4672bf541ebf50f41890f6be0206a2d6c8847", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.10s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/phylodm-04b56d33c03b9bed)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test util::test_argsort_vec ... ok
[INFO] [stdout] test util::test_mat_size_from_row_vec_size ... ok
[INFO] [stdout] test util::test_row_idx_from_mat_coords ... ok
[INFO] [stdout] test util::test_row_vec_to_arr_idx ... ok
[INFO] [stdout] test util::test_create_row_vec_from_mat_dims ... ok
[INFO] [stdout] test util::test_row_vec_size_from_mat_size ... ok
[INFO] [stdout] test util::test_row_vec_to_symmat ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/phylodm-128d4af569062aeb)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stderr]      Running tests/tree.rs (/opt/rustwide/target/debug/deps/tree-abc4d3d18d1106d6)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test tests::test_tree ... ok
[INFO] [stdout] test tests::test_get_nearest_taxa ... ok
[INFO] [stdout] test tests::test_tree_dm_twice ... ok
[INFO] [stdout] test tests::test_tree_norm ... ok
[INFO] [stdout] test tests::test_update_edge_lengths ... ok
[INFO] [stderr]      Running tests/util.rs (/opt/rustwide/target/debug/deps/util-e41160aa4a39da69)
[INFO] [stdout] test tests::test_set_lengths ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests phylodm
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test test_integration ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 12 tests
[INFO] [stdout] test src/tree/types.rs - tree::types::Edge (line 21) ... ok
[INFO] [stdout] test src/util.rs - util::row_vec_to_arr_idx (line 167) ... ok
[INFO] [stdout] test src/util.rs - util::mat_size_from_row_vec_size (line 104) ... ok
[INFO] [stdout] test src/tree/types.rs - tree::types::NodeDepth (line 32) ... ok
[INFO] [stdout] test src/util.rs - util::row_idx_from_mat_coords (line 13) ... ok
[INFO] [stdout] test src/tree/types.rs - tree::types::Taxon (line 43) ... ok
[INFO] [stdout] test src/tree/types.rs - tree::types::NodeId (line 10) ... ok
[INFO] [stdout] test src/pdm.rs - pdm::PDM (line 18) ... ok
[INFO] [stdout] test src/util.rs - util::row_vec_size_from_mat_size (line 50) ... ok
[INFO] [stdout] test src/util.rs - util::argsort_vec (line 198) ... ok
[INFO] [stdout] test src/util.rs - util::create_row_vec_from_mat_dims (line 77) ... ok
[INFO] [stdout] test src/util.rs - util::row_vec_to_symmat (line 129) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.72s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "2d9400e9b9201a2625bc326c38c4672bf541ebf50f41890f6be0206a2d6c8847", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2d9400e9b9201a2625bc326c38c4672bf541ebf50f41890f6be0206a2d6c8847", kill_on_drop: false }`
[INFO] [stdout] 2d9400e9b9201a2625bc326c38c4672bf541ebf50f41890f6be0206a2d6c8847