[INFO] fetching crate nu_plugin_bio 0.85.0...
[INFO] testing nu_plugin_bio-0.85.0 against 1.90.0 for beta-1.91-3
[INFO] extracting crate nu_plugin_bio 0.85.0 into /workspace/builds/worker-2-tc1/source
[INFO] started tweaking crates.io crate nu_plugin_bio 0.85.0
[INFO] finished tweaking crates.io crate nu_plugin_bio 0.85.0
[INFO] tweaked toml for crates.io crate nu_plugin_bio 0.85.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate nu_plugin_bio 0.85.0 on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate nu_plugin_bio 0.85.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded typetag v0.2.5
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[INFO] [stderr]   Downloaded vte v0.11.1
[INFO] [stderr]   Downloaded nu-utils v0.85.0
[INFO] [stderr]   Downloaded noodles-fasta v0.30.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.25.0
[INFO] [stderr]   Downloaded noodles-core v0.12.0
[INFO] [stderr]   Downloaded noodles-tabix v0.30.0
[INFO] [stderr]   Downloaded rmp-serde v1.1.1
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[INFO] [stderr]   Downloaded mach2 v0.4.1
[INFO] [stderr]   Downloaded link-cplusplus v1.0.7
[INFO] [stderr]   Downloaded sys-locale v0.3.1
[INFO] [stderr]   Downloaded nu-plugin v0.85.0
[INFO] [stderr]   Downloaded chrono-humanize v0.2.2
[INFO] [stderr]   Downloaded smawk v0.3.1
[INFO] [stderr]   Downloaded omnipath v0.1.1
[INFO] [stderr]   Downloaded gfa v0.10.1
[INFO] [stderr]   Downloaded scratch v1.0.2
[INFO] [stderr]   Downloaded vte_generate_state_changes v0.1.1
[INFO] [stderr]   Downloaded nu-protocol v0.85.0
[INFO] [stderr]   Downloaded nu-glob v0.85.0
[INFO] [stderr]   Downloaded nu-engine v0.85.0
[INFO] [stderr]   Downloaded is_ci v1.1.1
[INFO] [stderr]   Downloaded cxxbridge-flags v1.0.82
[INFO] [stderr]   Downloaded serde_derive v1.0.148
[INFO] [stderr]   Downloaded nu-path v0.85.0
[INFO] [stderr]   Downloaded supports-unicode v2.0.0
[INFO] [stderr]   Downloaded strip-ansi-escapes v0.2.0
[INFO] [stderr]   Downloaded thiserror-impl v1.0.49
[INFO] [stderr]   Downloaded thiserror v1.0.49
[INFO] [stderr]   Downloaded ghost v0.1.6
[INFO] [stderr]   Downloaded inventory v0.3.3
[INFO] [stderr]   Downloaded typetag-impl v0.2.5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] fa28782fce0df098eb5f8abcf91c801645e3d3eafbd96ae5d5c8eecf9e4e7284
[INFO] running `Command { std: "docker" "start" "-a" "fa28782fce0df098eb5f8abcf91c801645e3d3eafbd96ae5d5c8eecf9e4e7284", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "fa28782fce0df098eb5f8abcf91c801645e3d3eafbd96ae5d5c8eecf9e4e7284", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fa28782fce0df098eb5f8abcf91c801645e3d3eafbd96ae5d5c8eecf9e4e7284", kill_on_drop: false }`
[INFO] [stdout] fa28782fce0df098eb5f8abcf91c801645e3d3eafbd96ae5d5c8eecf9e4e7284
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1abf6341646b2739ea703f85e2f900668d9cbd2088a603dd5762c6c3d5fbfefd
[INFO] running `Command { std: "docker" "start" "-a" "1abf6341646b2739ea703f85e2f900668d9cbd2088a603dd5762c6c3d5fbfefd", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.69
[INFO] [stderr]    Compiling unicode-ident v1.0.5
[INFO] [stderr]    Compiling libc v0.2.149
[INFO] [stderr]    Compiling syn v1.0.104
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[INFO] [stderr]    Compiling once_cell v1.18.0
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling miniz_oxide v0.6.2
[INFO] [stderr]    Compiling ahash v0.8.3
[INFO] [stderr]    Compiling serde_derive v1.0.148
[INFO] [stderr]    Compiling allocator-api2 v0.2.16
[INFO] [stderr]    Compiling serde v1.0.148
[INFO] [stderr]    Compiling bitflags v2.4.0
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.6
[INFO] [stderr]    Compiling ahash v0.7.6
[INFO] [stderr]    Compiling flate2 v1.0.25
[INFO] [stderr]    Compiling hashbrown v0.14.1
[INFO] [stderr]    Compiling quote v1.0.33
[INFO] [stderr]    Compiling memoffset v0.7.1
[INFO] [stderr]    Compiling bytes v1.3.0
[INFO] [stderr]    Compiling noodles-core v0.12.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.13
[INFO] [stderr]    Compiling indexmap v2.0.2
[INFO] [stderr]    Compiling noodles-bgzf v0.25.0
[INFO] [stderr]    Compiling getrandom v0.2.8
[INFO] [stderr]    Compiling cc v1.0.77
[INFO] [stderr]    Compiling rustix v0.38.19
[INFO] [stderr]    Compiling pkg-config v0.3.26
[INFO] [stderr]    Compiling aho-corasick v0.7.20
[INFO] [stderr]    Compiling syn v2.0.38
[INFO] [stderr]    Compiling lexical-util v0.8.5
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling linux-raw-sys v0.4.10
[INFO] [stderr]    Compiling noodles-csi v0.25.0
[INFO] [stderr]    Compiling hashbrown v0.12.3
[INFO] [stderr]    Compiling generic-array v0.14.6
[INFO] [stderr]    Compiling regex v1.7.0
[INFO] [stderr]    Compiling thiserror v1.0.49
[INFO] [stderr]    Compiling rayon-core v1.10.1
[INFO] [stderr]    Compiling io-lifetimes v1.0.11
[INFO] [stderr]    Compiling crossbeam-deque v0.8.2
[INFO] [stderr]    Compiling time v0.1.45
[INFO] [stderr]    Compiling num_cpus v1.14.0
[INFO] [stderr]    Compiling iana-time-zone v0.1.53
[INFO] [stderr]    Compiling is-terminal v0.4.9
[INFO] [stderr]    Compiling pure-rust-locales v0.5.6
[INFO] [stderr]    Compiling rustix v0.36.16
[INFO] [stderr]    Compiling ryu v1.0.11
[INFO] [stderr]    Compiling lexical-write-integer v0.8.5
[INFO] [stderr]    Compiling lexical-parse-integer v0.8.6
[INFO] [stderr]    Compiling vte_generate_state_changes v0.1.1
[INFO] [stderr]    Compiling procfs v0.15.1
[INFO] [stderr]    Compiling itoa v1.0.4
[INFO] [stderr]    Compiling erased-serde v0.3.23
[INFO] [stderr]    Compiling either v1.8.0
[INFO] [stderr]    Compiling utf8parse v0.2.0
[INFO] [stderr]    Compiling vte v0.11.1
[INFO] [stderr]    Compiling rayon v1.6.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.49
[INFO] [stderr]    Compiling ghost v0.1.6
[INFO] [stderr]    Compiling ctor v0.1.26
[INFO] [stderr]    Compiling lexical-parse-float v0.8.5
[INFO] [stderr]    Compiling lexical-write-float v0.8.5
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling unicode-linebreak v0.1.4
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling dirs-sys-next v0.1.2
[INFO] [stderr]    Compiling smawk v0.3.1
[INFO] [stderr]    Compiling is_ci v1.1.1
[INFO] [stderr]    Compiling serde_json v1.0.89
[INFO] [stderr]    Compiling arrayvec v0.7.2
[INFO] [stderr]    Compiling nu-ansi-term v0.49.0
[INFO] [stderr]    Compiling unicode-width v0.1.10
[INFO] [stderr]    Compiling supports-color v2.1.0
[INFO] [stderr]    Compiling num-format v0.4.3
[INFO] [stderr]    Compiling sysinfo v0.29.10
[INFO] [stderr]    Compiling lscolors v0.15.0
[INFO] [stderr]    Compiling dirs-next v2.0.0
[INFO] [stderr]    Compiling lexical-core v0.8.5
[INFO] [stderr]    Compiling inventory v0.3.3
[INFO] [stderr]    Compiling pwd v1.4.0
[INFO] [stderr]    Compiling strip-ansi-escapes v0.2.0
[INFO] [stderr]    Compiling typetag-impl v0.2.5
[INFO] [stderr]    Compiling miette-derive v5.10.0
[INFO] [stderr]    Compiling block-buffer v0.10.3
[INFO] [stderr]    Compiling crypto-common v0.1.6
[INFO] [stderr]    Compiling textwrap v0.15.2
[INFO] [stderr]    Compiling supports-hyperlinks v2.1.0
[INFO] [stderr]    Compiling supports-unicode v2.0.0
[INFO] [stderr]    Compiling nix v0.27.1
[INFO] [stderr]    Compiling terminal_size v0.1.17
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling sys-locale v0.3.1
[INFO] [stderr]    Compiling utf8-width v0.1.6
[INFO] [stderr]    Compiling percent-encoding v2.2.0
[INFO] [stderr]    Compiling nu-utils v0.85.0
[INFO] [stderr]    Compiling fancy-regex v0.11.0
[INFO] [stderr]    Compiling miette v5.10.0
[INFO] [stderr]    Compiling digest v0.10.6
[INFO] [stderr]    Compiling noodles-sam v0.44.0
[INFO] [stderr]    Compiling nu-path v0.85.0
[INFO] [stderr]    Compiling noodles-tabix v0.30.0
[INFO] [stderr]    Compiling lru v0.11.1
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling paste v1.0.9
[INFO] [stderr]    Compiling anyhow v1.0.66
[INFO] [stderr]    Compiling noodles-vcf v0.41.0
[INFO] [stderr]    Compiling rmp v0.8.11
[INFO] [stderr]    Compiling xz2 v0.1.7
[INFO] [stderr]    Compiling md-5 v0.10.5
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling bytemuck_derive v1.3.0
[INFO] [stderr]    Compiling noodles-fasta v0.30.0
[INFO] [stderr]    Compiling nu-glob v0.85.0
[INFO] [stderr]    Compiling noodles-bam v0.47.0
[INFO] [stderr]    Compiling noodles-gff v0.21.0
[INFO] [stderr]    Compiling bytemuck v1.12.3
[INFO] [stderr]    Compiling memmap v0.7.0
[INFO] [stderr]    Compiling noodles-bed v0.10.0
[INFO] [stderr]    Compiling noodles-fastq v0.9.0
[INFO] [stderr]    Compiling noodles-cram v0.44.0
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling noodles-bcf v0.38.0
[INFO] [stderr]    Compiling bstr v1.0.1
[INFO] [stderr]    Compiling chrono v0.4.23
[INFO] [stderr]    Compiling byte-unit v4.0.17
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling rmp-serde v1.1.1
[INFO] [stderr]    Compiling gfa v0.10.1
[INFO] [stderr]    Compiling typetag v0.2.5
[INFO] [stderr]    Compiling chrono-humanize v0.2.2
[INFO] [stderr]    Compiling noodles v0.53.0
[INFO] [stderr]    Compiling nu-system v0.85.0
[INFO] [stderr]    Compiling nu-protocol v0.85.0
[INFO] [stderr]    Compiling nu-engine v0.85.0
[INFO] [stderr]    Compiling nu-plugin v0.85.0
[INFO] [stderr]    Compiling nu_plugin_bio v0.85.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 38s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v5.1.2
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "1abf6341646b2739ea703f85e2f900668d9cbd2088a603dd5762c6c3d5fbfefd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1abf6341646b2739ea703f85e2f900668d9cbd2088a603dd5762c6c3d5fbfefd", kill_on_drop: false }`
[INFO] [stdout] 1abf6341646b2739ea703f85e2f900668d9cbd2088a603dd5762c6c3d5fbfefd
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c0025c4a2e2a2267c6407ad6d67e129e603126096317d1dd00db2b9c3f22d5f3
[INFO] running `Command { std: "docker" "start" "-a" "c0025c4a2e2a2267c6407ad6d67e129e603126096317d1dd00db2b9c3f22d5f3", kill_on_drop: false }`
[INFO] [stderr]    Compiling nu_plugin_bio v0.85.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.22s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v5.1.2
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "c0025c4a2e2a2267c6407ad6d67e129e603126096317d1dd00db2b9c3f22d5f3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c0025c4a2e2a2267c6407ad6d67e129e603126096317d1dd00db2b9c3f22d5f3", kill_on_drop: false }`
[INFO] [stdout] c0025c4a2e2a2267c6407ad6d67e129e603126096317d1dd00db2b9c3f22d5f3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 3c2736013eafb72631c25b65e762708f1fb7595175afa578543897e7850082db
[INFO] running `Command { std: "docker" "start" "-a" "3c2736013eafb72631c25b65e762708f1fb7595175afa578543897e7850082db", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.29s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v5.1.2
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/nu_plugin_bio-baebc2520554cb3a)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/nu_plugin_bio-c12ae6f96b235e68)
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests nu_plugin_bio
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "3c2736013eafb72631c25b65e762708f1fb7595175afa578543897e7850082db", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3c2736013eafb72631c25b65e762708f1fb7595175afa578543897e7850082db", kill_on_drop: false }`
[INFO] [stdout] 3c2736013eafb72631c25b65e762708f1fb7595175afa578543897e7850082db