[INFO] fetching crate ncbi-vdb-sys 0.1.6... [INFO] testing ncbi-vdb-sys-0.1.6 against 1.90.0 for beta-1.91-3 [INFO] extracting crate ncbi-vdb-sys 0.1.6 into /workspace/builds/worker-7-tc1/source [INFO] removed /workspace/builds/worker-7-tc1/source/.cargo/config.toml [INFO] started tweaking crates.io crate ncbi-vdb-sys 0.1.6 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate ncbi-vdb-sys 0.1.6 [INFO] tweaked toml for crates.io crate ncbi-vdb-sys 0.1.6 written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate ncbi-vdb-sys 0.1.6 on toolchain 1.90.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate ncbi-vdb-sys 0.1.6 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded clap v4.5.37 [INFO] [stderr] Downloaded clap_builder v4.5.37 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b7a0706e432a9f602880e47f603b3c94f6bda09ed99418c755d58a831a2828e0 [INFO] running `Command { std: "docker" "start" "-a" "b7a0706e432a9f602880e47f603b3c94f6bda09ed99418c755d58a831a2828e0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b7a0706e432a9f602880e47f603b3c94f6bda09ed99418c755d58a831a2828e0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b7a0706e432a9f602880e47f603b3c94f6bda09ed99418c755d58a831a2828e0", kill_on_drop: false }` [INFO] [stdout] b7a0706e432a9f602880e47f603b3c94f6bda09ed99418c755d58a831a2828e0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 117a7042ab368285f73ef61ce014ebfe7745f24c47e439fa023334f168170347 [INFO] running `Command { std: "docker" "start" "-a" "117a7042ab368285f73ef61ce014ebfe7745f24c47e439fa023334f168170347", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.172 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling syn v2.0.101 [INFO] [stderr] Compiling walkdir v2.5.0 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir) [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] error: failed to run custom build command for `ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/ncbi-vdb-sys-8bfd2ea2ba03dfac/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=build.rs [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/libs [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/interfaces [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/setup/konfigure.perl [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/Makefile.env [INFO] [stderr] Configuring NCBI-VDB package [INFO] [stderr] checking system type... Linux [INFO] [stderr] checking OS distributor... [INFO] [stderr] checking machine architecture... x86_64 [INFO] [stderr] checking for supported architecture... x86_64 (64 bits) is supported [INFO] [stderr] checking for supported OS... Linux (linux) is supported [INFO] [stderr] checking for supported tool chain... gcc tool chain is supported [INFO] [stderr] checking for gcc... gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 [INFO] [stderr] checking for g++... yes [INFO] [stderr] checking for Python 3... /usr/bin/python3 [INFO] [stderr] checking whether g++ accepts -static-libstdc++... no [INFO] [stderr] checking for cmake... yes [INFO] [stderr] checking for fuse library... no [INFO] [stderr] checking for hdf5 library... no [INFO] [stderr] checking for magic library... no [INFO] [stderr] checking for xml2 library... no [INFO] [stderr] [INFO] [stderr] configure: creating 'build/ld.linux.exe_cmd.sh' [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] cannot open build/ld.linux.exe_cmd.sh to write at konfigure.perl line 885. [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at build.rs:37:13: [INFO] [stderr] Configure failed [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x644cbadb3f72 - std::backtrace_rs::backtrace::libunwind::trace::h2d45396358f41939 [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x644cbadb3f72 - std::backtrace_rs::backtrace::trace_unsynchronized::hffcefc0b67f1d6e2 [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x644cbadb3f72 - std::sys::backtrace::_print_fmt::hd72f71d23b436b92 [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x644cbadb3f72 - ::fmt::hdcfcb6d4c8489523 [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x644cbadd3b43 - core::fmt::rt::Argument::fmt::h2c56b3114963061a [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x644cbadd3b43 - core::fmt::write::h8a494366950f23bb [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x644cbadb16d3 - std::io::default_write_fmt::ha27fbccbc65eb6fa [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x644cbadb16d3 - std::io::Write::write_fmt::h6556609fca33d0b1 [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x644cbadb3dc2 - std::sys::backtrace::BacktraceLock::print::hb2a626a81e06b2dc [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x644cbadb5193 - std::panicking::default_hook::{{closure}}::h4f78485264f12d10 [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:300:27 [INFO] [stderr] 10: 0x644cbadb4f75 - std::panicking::default_hook::h2c66fc99e962531d [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:327:9 [INFO] [stderr] 11: 0x644cbadb5a65 - std::panicking::rust_panic_with_hook::h33ac55f64bbd807d [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:833:13 [INFO] [stderr] 12: 0x644cbadb58c6 - std::panicking::begin_panic_handler::{{closure}}::h30e7cb89678a57fe [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:699:13 [INFO] [stderr] 13: 0x644cbadb4469 - std::sys::backtrace::__rust_end_short_backtrace::hed60f27456c16ced [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x644cbadb558d - __rustc[de2ca18b4c54d5b8]::rust_begin_unwind [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:697:5 [INFO] [stderr] 15: 0x644cbadd2e10 - core::panicking::panic_fmt::h62f63d096dd276af [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x644cbad74deb - build_script_build::main::hc045358e08430404 [INFO] [stderr] 17: 0x644cbad71903 - core::ops::function::FnOnce::call_once::h21864bb18bb5f61a [INFO] [stderr] 18: 0x644cbad71586 - std::sys::backtrace::__rust_begin_short_backtrace::hceba5c3c692f3381 [INFO] [stderr] 19: 0x644cbad71479 - std::rt::lang_start::{{closure}}::h408539f6bae2687d [INFO] [stderr] 20: 0x644cbadae030 - core::ops::function::impls:: for &F>::call_once::h638295a043b40957 [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:290:21 [INFO] [stderr] 21: 0x644cbadae030 - std::panicking::catch_unwind::do_call::hbd68098bdea1ca50 [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:589:40 [INFO] [stderr] 22: 0x644cbadae030 - std::panicking::catch_unwind::h50591d85bf847c7c [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:552:19 [INFO] [stderr] 23: 0x644cbadae030 - std::panic::catch_unwind::h2487b4c4f2ae22c6 [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panic.rs:359:14 [INFO] [stderr] 24: 0x644cbadae030 - std::rt::lang_start_internal::{{closure}}::h61f0945cc6c9a811 [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/rt.rs:175:24 [INFO] [stderr] 25: 0x644cbadae030 - std::panicking::catch_unwind::do_call::h34b9c3722acd6bd1 [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:589:40 [INFO] [stderr] 26: 0x644cbadae030 - std::panicking::catch_unwind::hf9a822ea043fb0d6 [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:552:19 [INFO] [stderr] 27: 0x644cbadae030 - std::panic::catch_unwind::h5b3cac802237ed89 [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panic.rs:359:14 [INFO] [stderr] 28: 0x644cbadae030 - std::rt::lang_start_internal::h34f9328d113fd60a [INFO] [stderr] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/rt.rs:171:5 [INFO] [stderr] 29: 0x644cbad71461 - std::rt::lang_start::h01ab0d42a91585da [INFO] [stderr] 30: 0x644cbad75175 - main [INFO] [stderr] 31: 0x7ff4bceaa1ca - [INFO] [stderr] 32: 0x7ff4bceaa28b - __libc_start_main [INFO] [stderr] 33: 0x644cbad71015 - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "117a7042ab368285f73ef61ce014ebfe7745f24c47e439fa023334f168170347", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "117a7042ab368285f73ef61ce014ebfe7745f24c47e439fa023334f168170347", kill_on_drop: false }` [INFO] [stdout] 117a7042ab368285f73ef61ce014ebfe7745f24c47e439fa023334f168170347