[INFO] fetching crate hmmsearch_rs 0.1.0...
[INFO] testing hmmsearch_rs-0.1.0 against 1.90.0 for beta-1.91-3
[INFO] extracting crate hmmsearch_rs 0.1.0 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate hmmsearch_rs 0.1.0
[INFO] finished tweaking crates.io crate hmmsearch_rs 0.1.0
[INFO] tweaked toml for crates.io crate hmmsearch_rs 0.1.0 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate hmmsearch_rs 0.1.0 on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate hmmsearch_rs 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded xz2 v0.1.7
[INFO] [stderr]   Downloaded crc32fast v1.4.2
[INFO] [stderr]   Downloaded bzip2 v0.4.4
[INFO] [stderr]   Downloaded errno v0.3.9
[INFO] [stderr]   Downloaded bytecount v0.6.8
[INFO] [stderr]   Downloaded env_filter v0.1.2
[INFO] [stderr]   Downloaded home v0.5.9
[INFO] [stderr]   Downloaded env_logger v0.11.5
[INFO] [stderr]   Downloaded clap v4.5.16
[INFO] [stderr]   Downloaded hmmer-rs-2 v0.2.1
[INFO] [stderr]   Downloaded flate2 v1.0.32
[INFO] [stderr]   Downloaded cc v1.1.14
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded clap_builder v4.5.15
[INFO] [stderr]   Downloaded libloading v0.8.5
[INFO] [stderr]   Downloaded bindgen v0.65.1
[INFO] [stderr]   Downloaded syn v2.0.75
[INFO] [stderr]   Downloaded rustix v0.38.34
[INFO] [stderr]   Downloaded bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]   Downloaded lzma-sys v0.1.20
[INFO] [stderr]   Downloaded libhmmer-sys-2 v0.1.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 14d600d2ac08e3ddf0b35ee87a3dbb6493572fc26d56a58a11ad857cfa343bd9
[INFO] running `Command { std: "docker" "start" "-a" "14d600d2ac08e3ddf0b35ee87a3dbb6493572fc26d56a58a11ad857cfa343bd9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "14d600d2ac08e3ddf0b35ee87a3dbb6493572fc26d56a58a11ad857cfa343bd9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "14d600d2ac08e3ddf0b35ee87a3dbb6493572fc26d56a58a11ad857cfa343bd9", kill_on_drop: false }`
[INFO] [stdout] 14d600d2ac08e3ddf0b35ee87a3dbb6493572fc26d56a58a11ad857cfa343bd9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3495128904d8b2d7edf062dac74dfe7fe0453f0bb429af73f723ca0926d6a3ab
[INFO] running `Command { std: "docker" "start" "-a" "3495128904d8b2d7edf062dac74dfe7fe0453f0bb429af73f723ca0926d6a3ab", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling cc v1.1.14
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling pkg-config v0.3.30
[INFO] [stderr]    Compiling prettyplease v0.2.20
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]    Compiling bitflags v2.6.0
[INFO] [stderr]    Compiling linux-raw-sys v0.4.14
[INFO] [stderr]    Compiling regex-syntax v0.8.4
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling libloading v0.8.5
[INFO] [stderr]    Compiling bindgen v0.65.1
[INFO] [stderr]    Compiling syn v2.0.75
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling home v0.5.9
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling log v0.4.22
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling anstyle-parse v0.2.5
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling anstyle v1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling anstyle-query v1.1.1
[INFO] [stderr]    Compiling fs_extra v1.3.0
[INFO] [stderr]    Compiling autocfg v1.3.0
[INFO] [stderr]    Compiling regex-automata v0.4.7
[INFO] [stderr]    Compiling which v4.4.2
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling colorchoice v1.0.2
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling anstream v0.6.15
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling adler2 v2.0.0
[INFO] [stderr]    Compiling miniz_oxide v0.8.0
[INFO] [stderr]    Compiling regex v1.10.6
[INFO] [stderr]    Compiling crc32fast v1.4.2
[INFO] [stderr]    Compiling clap_lex v0.7.2
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling flate2 v1.0.32
[INFO] [stderr]    Compiling clap_builder v4.5.15
[INFO] [stderr]    Compiling xz2 v0.1.7
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling buffer-redux v1.0.2
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling iana-time-zone v0.1.60
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling needletail v0.5.1
[INFO] [stderr]    Compiling chrono v0.4.38
[INFO] [stderr]    Compiling env_filter v0.1.2
[INFO] [stderr]    Compiling env_logger v0.11.5
[INFO] [stderr]    Compiling clap v4.5.16
[INFO] [stderr]    Compiling libhmmer-sys-2 v0.1.0
[INFO] [stderr]    Compiling hmmer-rs-2 v0.2.1
[INFO] [stderr]    Compiling hmmsearch_rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 19s
[INFO] running `Command { std: "docker" "inspect" "3495128904d8b2d7edf062dac74dfe7fe0453f0bb429af73f723ca0926d6a3ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3495128904d8b2d7edf062dac74dfe7fe0453f0bb429af73f723ca0926d6a3ab", kill_on_drop: false }`
[INFO] [stdout] 3495128904d8b2d7edf062dac74dfe7fe0453f0bb429af73f723ca0926d6a3ab
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f2636fbcfd001b53c9b4dee288329bff3d37cd4ab16ed4813b79f77b12ee7ea3
[INFO] running `Command { std: "docker" "start" "-a" "f2636fbcfd001b53c9b4dee288329bff3d37cd4ab16ed4813b79f77b12ee7ea3", kill_on_drop: false }`
[INFO] [stderr]    Compiling hmmsearch_rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.97s
[INFO] running `Command { std: "docker" "inspect" "f2636fbcfd001b53c9b4dee288329bff3d37cd4ab16ed4813b79f77b12ee7ea3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f2636fbcfd001b53c9b4dee288329bff3d37cd4ab16ed4813b79f77b12ee7ea3", kill_on_drop: false }`
[INFO] [stdout] f2636fbcfd001b53c9b4dee288329bff3d37cd4ab16ed4813b79f77b12ee7ea3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 284d4d06c161d505be865bf195b45292d3f2801788a182937336c13d036cc95b
[INFO] running `Command { std: "docker" "start" "-a" "284d4d06c161d505be865bf195b45292d3f2801788a182937336c13d036cc95b", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.10s
[INFO] [stderr]      Running unittests src/hmmsearch_rs.rs (/opt/rustwide/target/debug/deps/hmmsearch_rs-39c23a1fd7ef6dc6)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "284d4d06c161d505be865bf195b45292d3f2801788a182937336c13d036cc95b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "284d4d06c161d505be865bf195b45292d3f2801788a182937336c13d036cc95b", kill_on_drop: false }`
[INFO] [stdout] 284d4d06c161d505be865bf195b45292d3f2801788a182937336c13d036cc95b