[INFO] fetching crate gkl 0.1.1...
[INFO] testing gkl-0.1.1 against 1.90.0 for beta-1.91-3
[INFO] extracting crate gkl 0.1.1 into /workspace/builds/worker-7-tc1/source
[INFO] started tweaking crates.io crate gkl 0.1.1
[INFO] finished tweaking crates.io crate gkl 0.1.1
[INFO] tweaked toml for crates.io crate gkl 0.1.1 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate gkl 0.1.1 on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 3 packages to latest compatible versions
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6f15b0dfe46a001c2fd2ceb5f1f339ec261854608b354b1873bee0d3f1e9ef29
[INFO] running `Command { std: "docker" "start" "-a" "6f15b0dfe46a001c2fd2ceb5f1f339ec261854608b354b1873bee0d3f1e9ef29", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6f15b0dfe46a001c2fd2ceb5f1f339ec261854608b354b1873bee0d3f1e9ef29", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6f15b0dfe46a001c2fd2ceb5f1f339ec261854608b354b1873bee0d3f1e9ef29", kill_on_drop: false }`
[INFO] [stdout] 6f15b0dfe46a001c2fd2ceb5f1f339ec261854608b354b1873bee0d3f1e9ef29
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e6e3657673854a5332f3d272ac8b1d6dca75e812145c5459bd4a8c9907fb541b
[INFO] running `Command { std: "docker" "start" "-a" "e6e3657673854a5332f3d272ac8b1d6dca75e812145c5459bd4a8c9907fb541b", kill_on_drop: false }`
[INFO] [stderr]    Compiling gkl v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 6.68s
[INFO] running `Command { std: "docker" "inspect" "e6e3657673854a5332f3d272ac8b1d6dca75e812145c5459bd4a8c9907fb541b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e6e3657673854a5332f3d272ac8b1d6dca75e812145c5459bd4a8c9907fb541b", kill_on_drop: false }`
[INFO] [stdout] e6e3657673854a5332f3d272ac8b1d6dca75e812145c5459bd4a8c9907fb541b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f956266791b74a29bb700b25fa6f19239a0c1ec6b83962b2d13131c432bb3261
[INFO] running `Command { std: "docker" "start" "-a" "f956266791b74a29bb700b25fa6f19239a0c1ec6b83962b2d13131c432bb3261", kill_on_drop: false }`
[INFO] [stderr]    Compiling gkl v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.38s
[INFO] running `Command { std: "docker" "inspect" "f956266791b74a29bb700b25fa6f19239a0c1ec6b83962b2d13131c432bb3261", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f956266791b74a29bb700b25fa6f19239a0c1ec6b83962b2d13131c432bb3261", kill_on_drop: false }`
[INFO] [stdout] f956266791b74a29bb700b25fa6f19239a0c1ec6b83962b2d13131c432bb3261
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 1bf8052dee49d763a19c123ab34d81867121602435e2e6f20b8eaceeec4c0e7b
[INFO] running `Command { std: "docker" "start" "-a" "1bf8052dee49d763a19c123ab34d81867121602435e2e6f20b8eaceeec4c0e7b", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/gkl-2c67ef52a311c9d4)
[INFO] [stdout] running 0 tests
[INFO] [stderr]      Running tests/pairhmm.rs (/opt/rustwide/target/debug/deps/pairhmm-7ec5dc4d6ec0a809)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test simple ... ok
[INFO] [stdout] test data_file ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.14s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/smithwaterman.rs (/opt/rustwide/target/debug/deps/smithwaterman-af34795387ce4afd)
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test odd_no_alignment ... ok
[INFO] [stdout] test indels_at_start_and_end ... ok
[INFO] [stdout] test single_element ... ok
[INFO] [stdout] test substring_match ... ok
[INFO] [stdout] test degenerate_alignment_with_indels_at_both_ends ... ok
[INFO] [stdout] test read_aligned_to_ref_complex_alignment ... ok
[INFO] [stdout] test substring_match_long ... ok
[INFO] [stdout] test identical_alignments_with_differing_flank_lengths ... ok
[INFO] [stdout] test two_element ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests gkl
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "1bf8052dee49d763a19c123ab34d81867121602435e2e6f20b8eaceeec4c0e7b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1bf8052dee49d763a19c123ab34d81867121602435e2e6f20b8eaceeec4c0e7b", kill_on_drop: false }`
[INFO] [stdout] 1bf8052dee49d763a19c123ab34d81867121602435e2e6f20b8eaceeec4c0e7b