[INFO] fetching crate fxread 0.2.14... [INFO] testing fxread-0.2.14 against 1.90.0 for beta-1.91-3 [INFO] extracting crate fxread 0.2.14 into /workspace/builds/worker-5-tc1/source [INFO] started tweaking crates.io crate fxread 0.2.14 [INFO] finished tweaking crates.io crate fxread 0.2.14 [INFO] tweaked toml for crates.io crate fxread 0.2.14 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate fxread 0.2.14 on toolchain 1.90.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 34 packages to latest compatible versions [INFO] [stderr] Adding niffler v2.7.0 (available: v3.0.0) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bgzip v0.3.1 [INFO] [stderr] Downloaded niffler v2.7.0 [INFO] [stderr] Downloaded liblzma v0.3.6 [INFO] [stderr] Downloaded liblzma-sys v0.3.13 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1bcc02e6077c2f85af08a7a9f654a4902ffd317c066af6c49c8f804327b11865 [INFO] running `Command { std: "docker" "start" "-a" "1bcc02e6077c2f85af08a7a9f654a4902ffd317c066af6c49c8f804327b11865", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1bcc02e6077c2f85af08a7a9f654a4902ffd317c066af6c49c8f804327b11865", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1bcc02e6077c2f85af08a7a9f654a4902ffd317c066af6c49c8f804327b11865", kill_on_drop: false }` [INFO] [stdout] 1bcc02e6077c2f85af08a7a9f654a4902ffd317c066af6c49c8f804327b11865 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2f5d991c65340ba5d74f6d54a6b86904505b5872dcadf8e6ece611d657934520 [INFO] running `Command { std: "docker" "start" "-a" "2f5d991c65340ba5d74f6d54a6b86904505b5872dcadf8e6ece611d657934520", kill_on_drop: false }` [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Compiling adler2 v2.0.1 [INFO] [stderr] Compiling thiserror v2.0.17 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Compiling liblzma-sys v0.3.13 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling flate2 v1.1.2 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling thiserror-impl v2.0.17 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling bgzip v0.3.1 [INFO] [stderr] Compiling liblzma v0.3.6 [INFO] [stderr] Compiling zstd v0.13.3 [INFO] [stderr] Compiling niffler v2.7.0 [INFO] [stderr] Compiling fxread v0.2.14 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 27.69s [INFO] running `Command { std: "docker" "inspect" "2f5d991c65340ba5d74f6d54a6b86904505b5872dcadf8e6ece611d657934520", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2f5d991c65340ba5d74f6d54a6b86904505b5872dcadf8e6ece611d657934520", kill_on_drop: false }` [INFO] [stdout] 2f5d991c65340ba5d74f6d54a6b86904505b5872dcadf8e6ece611d657934520 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 886c33761b8103752edd46fc9a213503e3212f515e8080dcda50ca67447522c3 [INFO] running `Command { std: "docker" "start" "-a" "886c33761b8103752edd46fc9a213503e3212f515e8080dcda50ca67447522c3", kill_on_drop: false }` [INFO] [stderr] Compiling fxread v0.2.14 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.13s [INFO] running `Command { std: "docker" "inspect" "886c33761b8103752edd46fc9a213503e3212f515e8080dcda50ca67447522c3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "886c33761b8103752edd46fc9a213503e3212f515e8080dcda50ca67447522c3", kill_on_drop: false }` [INFO] [stdout] 886c33761b8103752edd46fc9a213503e3212f515e8080dcda50ca67447522c3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 195d23b7fd6832fccc24e31c60ba0df8a634a8294445da77f5414e0454e22225 [INFO] running `Command { std: "docker" "start" "-a" "195d23b7fd6832fccc24e31c60ba0df8a634a8294445da77f5414e0454e22225", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.10s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/fxread-6db6f942d89796ab) [INFO] [stdout] [INFO] [stdout] running 68 tests [INFO] [stdout] test fasta::tests::lower_to_upper ... ok [INFO] [stdout] test fasta::tests::read_gzip ... ok [INFO] [stdout] test fasta::tests::unexpected_chars ... ok [INFO] [stdout] test fastq::tests::lower_to_upper ... ok [INFO] [stdout] test fasta::tests::read_plaintext ... ok [INFO] [stdout] test fastq::tests::read_string ... ok [INFO] [stdout] test fasta::tests::read_string ... ok [INFO] [stdout] test fastq::tests::unexpected_chars ... ok [INFO] [stdout] test record::test::create ... ok [INFO] [stdout] test record::test::fasta_insert_custom_oversized ... ok [INFO] [stdout] test record::test::fasta_trim_left ... ok [INFO] [stdout] test record::test::fasta_insert_middle ... ok [INFO] [stdout] test record::test::fasta_str_methods ... ok [INFO] [stdout] test record::test::fasta_insert_right ... ok [INFO] [stdout] test record::test::fasta_trim_right ... ok [INFO] [stdout] test record::test::fasta_trim_right_oversized ... ok [INFO] [stdout] test record::test::fasta_insert_left ... ok [INFO] [stdout] test record::test::fasta_trim_left_oversized ... ok [INFO] [stdout] test record::test::fastq_insert_left ... ok [INFO] [stdout] test record::test::fastq_insert_middle ... ok [INFO] [stdout] test record::test::fastq_trim_left ... ok [INFO] [stdout] test record::test::fastq_trim_left_oversized ... ok [INFO] [stdout] test record::test::fastq_insert_custom_oversized ... ok [INFO] [stdout] test record::test::fastq_str_methods ... ok [INFO] [stdout] test record::test::fastq_trim_right_oversized ... ok [INFO] [stdout] test record::test::init_fasta_from_parts ... ok [INFO] [stdout] test record::test::init_fasta_from_parts_invalid_id_a ... ok [INFO] [stdout] test record::test::init_fasta_from_parts_invalid_id_b ... ok [INFO] [stdout] test record::test::init_fastq_from_parts ... ok [INFO] [stdout] test record::test::init_fastq_from_parts_invalid_id_a ... ok [INFO] [stdout] test record::test::fastq_trim_right ... ok [INFO] [stdout] test record::test::init_fastq_from_parts_invalid_qual_a ... ok [INFO] [stdout] test record::test::init_fastq_from_parts_invalid_id_b ... ok [INFO] [stdout] test record::test::init_fastq_from_parts_invalid_seq_a ... ok [INFO] [stdout] test record::test::init_fastq_from_parts_invalid_seq_qual_size_mismatch_b ... ok [INFO] [stdout] test record::test::init_fastq_from_parts_invalid_seq_qual_size_mismatch_a ... ok [INFO] [stdout] test record::test::invalid_fasta ... ok [INFO] [stdout] test record::test::invalid_fastq ... ok [INFO] [stdout] test record::test::invalid_fix_fastq ... ok [INFO] [stdout] test record::test::invalid_lowercase ... ok [INFO] [stdout] test record::test::reverse_complement_fastq_inplace ... ok [INFO] [stdout] test record::test::invalid_fix_fasta ... ok [INFO] [stdout] test record::test::reverse_complement_inplace ... ok [INFO] [stdout] test record::test::reverse_complement ... ok [INFO] [stdout] test record::test::init_fasta_from_parts_invalid_seq_a ... ok [INFO] [stdout] test record::test::reverse_complement_lower ... ok [INFO] [stdout] test record::test::upper_conversion ... ok [INFO] [stdout] test record::test::upper_inplace ... ok [INFO] [stdout] test record::test::valid_fasta ... ok [INFO] [stdout] test record::test::valid_fastq ... ok [INFO] [stdout] test utils::test::assign_bz2fasta ... ok [INFO] [stdout] test utils::test::assign_fasta ... ok [INFO] [stdout] test utils::test::assign_bz2fastq ... ok [INFO] [stdout] test record::test::valid_lowercase ... ok [INFO] [stdout] test record::test::upper_nochange_inplace ... ok [INFO] [stdout] test utils::test::assign_fa_stdin ... ok [INFO] [stdout] test utils::test::assign_gzfasta ... ok [INFO] [stdout] test fastq::tests::read_plaintext ... ok [INFO] [stdout] test record::test::fastq_insert_right ... ok [INFO] [stdout] test utils::test::assign_fq_stdin ... ok [INFO] [stdout] test utils::test::assign_fastq ... ok [INFO] [stdout] test fastq::tests::read_gzip ... ok [INFO] [stdout] test utils::test::assign_xzfasta ... ok [INFO] [stdout] test utils::test::assign_zstfasta ... ok [INFO] [stdout] test utils::test::assign_gzfastq ... ok [INFO] [stdout] test utils::test::assign_malformed_stdin ... ok [INFO] [stdout] test utils::test::assign_zstfastq ... ok [INFO] [stdout] test utils::test::assign_xzfastq ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 68 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Doc-tests fxread [INFO] [stdout] [INFO] [stdout] running 15 tests [INFO] [stdout] test src/record.rs - record::Record::new_fasta (line 65) ... ok [INFO] [stdout] test src/fasta.rs - fasta::FastaReader::new (line 48) ... ok [INFO] [stdout] test src/record.rs - record::Record::new (line 45) ... ok [INFO] [stdout] test src/fastq.rs - fastq::FastqReader::new (line 58) ... ok [INFO] [stdout] test src/fastq.rs - fastq::FastqReader::new (line 64) ... ok [INFO] [stdout] test src/fasta.rs - fasta::FastaReader::new (line 54) ... ok [INFO] [stdout] test src/lib.rs - (line 21) ... ok [INFO] [stdout] test src/record.rs - record::Record::new_fasta_from_parts (line 118) ... ok [INFO] [stdout] test src/record.rs - record::Record::new_fastq (line 89) ... ok [INFO] [stdout] test src/utils.rs - utils::initialize_reader (line 43) ... ok [INFO] [stdout] test src/record.rs - record::Record::new_fastq_from_parts (line 160) ... ok [INFO] [stdout] test src/utils.rs - utils::initialize_reader (line 67) ... ok [INFO] [stdout] test src/utils.rs - utils::initialize_reader (line 78) ... ok [INFO] [stdout] test src/utils.rs - utils::initialize_stdin_reader (line 106) ... ok [INFO] [stdout] test src/utils.rs - utils::initialize_reader (line 56) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.89s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "195d23b7fd6832fccc24e31c60ba0df8a634a8294445da77f5414e0454e22225", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "195d23b7fd6832fccc24e31c60ba0df8a634a8294445da77f5414e0454e22225", kill_on_drop: false }` [INFO] [stdout] 195d23b7fd6832fccc24e31c60ba0df8a634a8294445da77f5414e0454e22225