[INFO] fetching crate deepbiop-cli 0.1.15...
[INFO] testing deepbiop-cli-0.1.15 against 1.90.0 for beta-1.91-3
[INFO] extracting crate deepbiop-cli 0.1.15 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate deepbiop-cli 0.1.15
[INFO] finished tweaking crates.io crate deepbiop-cli 0.1.15
[INFO] tweaked toml for crates.io crate deepbiop-cli 0.1.15 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-cli 0.1.15 on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-cli 0.1.15 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded serde_derive v1.0.217
[INFO] [stderr]   Downloaded proc-macro-crate v3.2.0
[INFO] [stderr]   Downloaded noodles v0.87.0
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[INFO] [stderr]   Downloaded gemm-c32 v0.17.1
[INFO] [stderr]   Downloaded reborrow v0.5.5
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[INFO] [stderr]   Downloaded needletail v0.6.1
[INFO] [stderr]   Downloaded raw-cpuid v10.7.0
[INFO] [stderr]   Downloaded liblzma-sys v0.3.11
[INFO] [stderr]   Downloaded deepbiop-utils v0.1.15
[INFO] [stderr]   Downloaded pulp v0.18.22
[INFO] [stderr]   Downloaded serde_json v1.0.137
[INFO] [stderr]   Downloaded cc v1.2.10
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[INFO] [stderr]   Downloaded crossbeam-channel v0.5.14
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[INFO] [stderr]   Downloaded chrono v0.4.39
[INFO] [stderr]   Downloaded brotli-decompressor v4.0.2
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.23.4
[INFO] [stderr]   Downloaded candle-core v0.8.2
[INFO] [stderr]   Downloaded arrow v54.0.0
[INFO] [stderr]   Downloaded brotli v7.0.0
[INFO] [stderr]   Downloaded toml_edit v0.22.22
[INFO] [stderr]   Downloaded deepbiop-fq v0.1.15
[INFO] [stderr]   Downloaded ndarray v0.16.1
[INFO] [stderr]   Downloaded winnow v0.6.24
[INFO] [stderr]   Downloaded deepbiop-fa v0.1.15
[INFO] [stderr]   Downloaded pyo3-ffi v0.23.4
[INFO] [stderr]   Downloaded pyo3 v0.23.4
[INFO] [stderr]   Downloaded arrow-cast v54.0.0
[INFO] [stderr]   Downloaded parquet v54.0.0
[INFO] [stderr]   Downloaded arrow-array v54.0.0
[INFO] [stderr]   Downloaded env_logger v0.11.6
[INFO] [stderr]   Downloaded clap-verbosity-flag v3.0.2
[INFO] [stderr]   Downloaded zstd-sys v2.0.13+zstd.1.5.6
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[INFO] [stderr]   Downloaded derive_builder v0.20.2
[INFO] [stderr]   Downloaded lexical v7.0.4
[INFO] [stderr]   Downloaded semver v1.0.25
[INFO] [stderr]   Downloaded arrow-buffer v54.0.0
[INFO] [stderr]   Downloaded arrow-select v54.0.0
[INFO] [stderr]   Downloaded matrixmultiply v0.3.9
[INFO] [stderr]   Downloaded bytemuck v1.21.0
[INFO] [stderr]   Downloaded pyo3-build-config v0.23.4
[INFO] [stderr]   Downloaded pyo3-macros v0.23.4
[INFO] [stderr]   Downloaded os_info v3.9.2
[INFO] [stderr]   Downloaded bit-vec v0.8.0
[INFO] [stderr]   Downloaded sysctl v0.5.5
[INFO] [stderr]   Downloaded gemm-common v0.17.1
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[INFO] [stderr]   Downloaded ug v0.0.2
[INFO] [stderr]   Downloaded derive_arbitrary v1.4.1
[INFO] [stderr]   Downloaded deepbiop-core v0.1.15
[INFO] [stderr]   Downloaded arrow-ord v54.0.0
[INFO] [stderr]   Downloaded lz4_flex v0.11.3
[INFO] [stderr]   Downloaded zstd-safe v7.2.1
[INFO] [stderr]   Downloaded inventory v0.3.17
[INFO] [stderr]   Downloaded maplit v1.0.2
[INFO] [stderr]   Downloaded bytemuck_derive v1.8.1
[INFO] [stderr]   Downloaded rustc-hash v2.1.0
[INFO] [stderr]   Downloaded pyo3-stub-gen-derive v0.6.2
[INFO] [stderr]   Downloaded pyo3-stub-gen v0.6.2
[INFO] [stderr]   Downloaded human-panic v2.0.2
[INFO] [stderr]   Downloaded noodles-fasta v0.46.0
[INFO] [stderr]   Downloaded deepbiop-bam v0.1.15
[INFO] [stderr]   Downloaded noodles-fastq v0.16.0
[INFO] [stderr]   Downloaded num_enum v0.7.3
[INFO] [stderr]   Downloaded tempfile v3.15.0
[INFO] [stderr]   Downloaded smawk v0.3.2
[INFO] [stderr]   Downloaded unicode-linebreak v0.1.5
[INFO] [stderr]   Downloaded textwrap v0.16.1
[INFO] [stderr]   Downloaded uuid v1.12.1
[INFO] [stderr]   Downloaded cmake v0.1.52
[INFO] [stderr]   Downloaded dyn-stack v0.10.0
[INFO] [stderr]   Downloaded safetensors v0.4.5
[INFO] [stderr]   Downloaded num_enum_derive v0.7.3
[INFO] [stderr]   Downloaded thiserror-impl v2.0.11
[INFO] [stderr]   Downloaded arrow-arith v54.0.0
[INFO] [stderr]   Downloaded arrow-string v54.0.0
[INFO] [stderr]   Downloaded liblzma v0.3.5
[INFO] [stderr]   Downloaded arrow-data v54.0.0
[INFO] [stderr]   Downloaded libz-ng-sys v1.1.21
[INFO] [stderr]   Downloaded gemm-f16 v0.17.1
[INFO] [stderr]   Downloaded gemm v0.17.1
[INFO] [stderr]   Downloaded zerofrom-derive v0.1.5
[INFO] [stderr]   Downloaded zerofrom v0.1.5
[INFO] [stderr]   Downloaded thiserror v2.0.11
[INFO] [stderr]   Downloaded arrow-csv v54.0.0
[INFO] [stderr]   Downloaded derive_builder_core v0.20.2
[INFO] [stderr]   Downloaded derive_builder_macro v0.20.2
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[INFO] [stderr]   Downloaded zstd v0.13.2
[INFO] [stderr]   Downloaded flate2 v1.0.35
[INFO] [stderr]   Downloaded serde v1.0.217
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[INFO] [stderr]   Downloaded unindent v0.2.3
[INFO] [stderr]   Downloaded noodles-core v0.15.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 16154d8c35c18f046e8562984ad632c286ed0f0eeee3c73f30f4ca3fa73f781f
[INFO] running `Command { std: "docker" "start" "-a" "16154d8c35c18f046e8562984ad632c286ed0f0eeee3c73f30f4ca3fa73f781f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "16154d8c35c18f046e8562984ad632c286ed0f0eeee3c73f30f4ca3fa73f781f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "16154d8c35c18f046e8562984ad632c286ed0f0eeee3c73f30f4ca3fa73f781f", kill_on_drop: false }`
[INFO] [stdout] 16154d8c35c18f046e8562984ad632c286ed0f0eeee3c73f30f4ca3fa73f781f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1c9f499d052b9d58317c5024d614065d4936e1372100de1d2866aba7b1839b75
[INFO] running `Command { std: "docker" "start" "-a" "1c9f499d052b9d58317c5024d614065d4936e1372100de1d2866aba7b1839b75", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.93
[INFO] [stderr]    Compiling unicode-ident v1.0.14
[INFO] [stderr]    Compiling libc v0.2.169
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling once_cell v1.20.2
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling bytes v1.9.0
[INFO] [stderr]    Compiling serde v1.0.217
[INFO] [stderr]    Compiling target-lexicon v0.12.16
[INFO] [stderr]    Compiling indexmap v2.7.1
[INFO] [stderr]    Compiling pkg-config v0.3.31
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]    Compiling lexical-util v1.0.6
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling iana-time-zone v0.1.61
[INFO] [stderr]    Compiling arrow-schema v54.0.0
[INFO] [stderr]    Compiling adler2 v2.0.0
[INFO] [stderr]    Compiling crc32fast v1.4.2
[INFO] [stderr]    Compiling miniz_oxide v0.8.3
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.5
[INFO] [stderr]    Compiling pyo3-build-config v0.23.4
[INFO] [stderr]    Compiling lexical-write-integer v1.0.5
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]    Compiling lexical-parse-float v1.0.5
[INFO] [stderr]    Compiling winnow v0.6.24
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling ryu v1.0.18
[INFO] [stderr]    Compiling quote v1.0.38
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling lexical-write-float v1.0.5
[INFO] [stderr]    Compiling syn v2.0.96
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling semver v1.0.25
[INFO] [stderr]    Compiling seq-macro v0.3.5
[INFO] [stderr]    Compiling cc v1.2.10
[INFO] [stderr]    Compiling reborrow v0.5.5
[INFO] [stderr]    Compiling raw-cpuid v10.7.0
[INFO] [stderr]    Compiling serde_json v1.0.137
[INFO] [stderr]    Compiling bitflags v2.8.0
[INFO] [stderr]    Compiling lexical-core v1.0.5
[INFO] [stderr]    Compiling crossbeam-channel v0.5.14
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling log v0.4.25
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling zstd-safe v7.2.1
[INFO] [stderr]    Compiling anyhow v1.0.95
[INFO] [stderr]    Compiling rustc_version v0.4.1
[INFO] [stderr]    Compiling toml_datetime v0.6.8
[INFO] [stderr]    Compiling base64 v0.22.1
[INFO] [stderr]    Compiling flatbuffers v24.12.23
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling chrono v0.4.39
[INFO] [stderr]    Compiling atoi v2.0.0
[INFO] [stderr]    Compiling alloc-no-stdlib v2.0.4
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling alloc-stdlib v0.2.2
[INFO] [stderr]    Compiling pyo3-ffi v0.23.4
[INFO] [stderr]    Compiling pyo3-macros-backend v0.23.4
[INFO] [stderr]    Compiling cmake v0.1.52
[INFO] [stderr]    Compiling num-bigint v0.4.6
[INFO] [stderr]    Compiling num-iter v0.1.45
[INFO] [stderr]    Compiling pyo3 v0.23.4
[INFO] [stderr]    Compiling anstyle-parse v0.2.6
[INFO] [stderr]    Compiling toml_edit v0.22.22
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling indoc v2.0.5
[INFO] [stderr]    Compiling anstyle v1.0.10
[INFO] [stderr]    Compiling unindent v0.2.3
[INFO] [stderr]    Compiling snap v1.1.1
[INFO] [stderr]    Compiling colorchoice v1.0.3
[INFO] [stderr]    Compiling brotli-decompressor v4.0.2
[INFO] [stderr]    Compiling ordered-float v2.10.1
[INFO] [stderr]    Compiling twox-hash v1.6.3
[INFO] [stderr]    Compiling rustc-hash v2.1.0
[INFO] [stderr]    Compiling anstream v0.6.18
[INFO] [stderr]    Compiling rustix v0.38.44
[INFO] [stderr]    Compiling zip v1.1.4
[INFO] [stderr]    Compiling stable_deref_trait v1.2.0
[INFO] [stderr]    Compiling integer-encoding v3.0.4
[INFO] [stderr]    Compiling lz4_flex v0.11.3
[INFO] [stderr]    Compiling buffer-redux v1.0.2
[INFO] [stderr]    Compiling thrift v0.17.0
[INFO] [stderr]    Compiling inventory v0.3.17
[INFO] [stderr]    Compiling linux-raw-sys v0.4.15
[INFO] [stderr]    Compiling maplit v1.0.2
[INFO] [stderr]    Compiling thiserror v2.0.11
[INFO] [stderr]    Compiling libz-ng-sys v1.1.21
[INFO] [stderr]    Compiling zstd-sys v2.0.13+zstd.1.5.6
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling liblzma-sys v0.3.11
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling brotli v7.0.0
[INFO] [stderr]    Compiling memmap2 v0.9.5
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling lexical v7.0.4
[INFO] [stderr]    Compiling unicode-linebreak v0.1.5
[INFO] [stderr]    Compiling unicode-width v0.1.14
[INFO] [stderr]    Compiling smawk v0.3.2
[INFO] [stderr]    Compiling clap_builder v4.5.27
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling proc-macro-crate v3.2.0
[INFO] [stderr]    Compiling colored v3.0.0
[INFO] [stderr]    Compiling textwrap v0.16.1
[INFO] [stderr]    Compiling cfg_aliases v0.2.1
[INFO] [stderr]    Compiling object v0.36.7
[INFO] [stderr]    Compiling nix v0.29.0
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling gimli v0.31.1
[INFO] [stderr]    Compiling rustc-demangle v0.1.24
[INFO] [stderr]    Compiling uuid v1.12.1
[INFO] [stderr]    Compiling darling_core v0.20.10
[INFO] [stderr]    Compiling bstr v1.11.3
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/1.90.0-x86_64-unknown-linux-gnu/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-2.0.96/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="fold"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=55c52cb6f0aefff3 -C extra-filename=-0d918c757dfa5c5e --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-84b0e861b1df0018.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-381d04d3224c2f13.rmeta --extern unicode_ident=/opt/rustwide/target/debug/deps/libunicode_ident-b86b2828602f103e.rmeta --cap-lints allow --cap-lints=warn` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `brotli` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/1.90.0-x86_64-unknown-linux-gnu/bin/rustc --crate-name brotli --edition=2015 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/brotli-7.0.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="alloc-stdlib"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc-stdlib", "benchmark", "billing", "default", "disable-timer", "disallow_large_window_size", "external-literal-probability", "ffi-api", "float64", "floating_point_context_mixing", "no-stdlib-ffi-binding", "pass-through-ffi-panics", "seccomp", "sha2", "simd", "std", "validation", "vector_scratch_space"))' -C metadata=0d72049ea0562511 -C extra-filename=-4e3f79f0c49227d0 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern alloc_no_stdlib=/opt/rustwide/target/debug/deps/liballoc_no_stdlib-9b6dc59e0b5e34c7.rmeta --extern alloc_stdlib=/opt/rustwide/target/debug/deps/liballoc_stdlib-c6d1175378f2b7cc.rmeta --extern brotli_decompressor=/opt/rustwide/target/debug/deps/libbrotli_decompressor-f056a0fd61c843de.rmeta --cap-lints allow --cap-lints=warn` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "1c9f499d052b9d58317c5024d614065d4936e1372100de1d2866aba7b1839b75", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1c9f499d052b9d58317c5024d614065d4936e1372100de1d2866aba7b1839b75", kill_on_drop: false }`
[INFO] [stdout] 1c9f499d052b9d58317c5024d614065d4936e1372100de1d2866aba7b1839b75