[INFO] fetching crate cubiculum 0.1.50... [INFO] testing cubiculum-0.1.50 against 1.90.0 for beta-1.91-3 [INFO] extracting crate cubiculum 0.1.50 into /workspace/builds/worker-2-tc1/source [INFO] started tweaking crates.io crate cubiculum 0.1.50 [INFO] finished tweaking crates.io crate cubiculum 0.1.50 [INFO] tweaked toml for crates.io crate cubiculum 0.1.50 written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate cubiculum 0.1.50 on toolchain 1.90.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate cubiculum 0.1.50 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: `edition` is set on binary `bed12ToFraction` which is deprecated [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 61cc83cc5e5c18f0b6549fd07dfe465f0037743d53ed76f493bc167b6381a7c6 [INFO] running `Command { std: "docker" "start" "-a" "61cc83cc5e5c18f0b6549fd07dfe465f0037743d53ed76f493bc167b6381a7c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "61cc83cc5e5c18f0b6549fd07dfe465f0037743d53ed76f493bc167b6381a7c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "61cc83cc5e5c18f0b6549fd07dfe465f0037743d53ed76f493bc167b6381a7c6", kill_on_drop: false }` [INFO] [stdout] 61cc83cc5e5c18f0b6549fd07dfe465f0037743d53ed76f493bc167b6381a7c6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cc965b27ecb9e6c2d0ce66946a91b3f15604bf181137ec6756e8395c851f15ae [INFO] running `Command { std: "docker" "start" "-a" "cc965b27ecb9e6c2d0ce66946a91b3f15604bf181137ec6756e8395c851f15ae", kill_on_drop: false }` [INFO] [stderr] warning: `edition` is set on binary `bed12ToFraction` which is deprecated [INFO] [stderr] Compiling anstyle v1.0.10 [INFO] [stderr] Compiling colorchoice v1.0.3 [INFO] [stderr] Compiling anstyle-query v1.1.2 [INFO] [stderr] Compiling clap_lex v0.7.4 [INFO] [stderr] Compiling anstyle-parse v0.2.6 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling syn v2.0.100 [INFO] [stderr] Compiling anstream v0.6.18 [INFO] [stderr] Compiling clap_builder v4.5.40 [INFO] [stderr] Compiling clap_derive v4.5.40 [INFO] [stderr] Compiling clap v4.5.40 [INFO] [stderr] Compiling cubiculum v0.1.50 (/opt/rustwide/workdir) [INFO] [stdout] warning: hidden lifetime parameters in types are deprecated [INFO] [stdout] --> src/extract/extract.rs:26:37 [INFO] [stdout] | [INFO] [stdout] 26 | fn fmt(&self, f: &mut std::fmt::Formatter) -> std::fmt::Result { [INFO] [stdout] | ----------^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | expected lifetime parameter [INFO] [stdout] | [INFO] [stdout] note: the lint level is defined here [INFO] [stdout] --> src/lib.rs:5:9 [INFO] [stdout] | [INFO] [stdout] 5 | #![warn(rust_2018_idioms)] [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] = note: `#[warn(elided_lifetimes_in_paths)]` implied by `#[warn(rust_2018_idioms)]` [INFO] [stdout] help: indicate the anonymous lifetime [INFO] [stdout] | [INFO] [stdout] 26 | fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `parse_bed` and `to_line` [INFO] [stdout] --> src/structs/structs.rs:3:31 [INFO] [stdout] | [INFO] [stdout] 3 | use crate::extract::extract::{parse_bed, to_line}; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::extract::*` [INFO] [stdout] --> src/lib.rs:11:9 [INFO] [stdout] | [INFO] [stdout] 11 | pub use crate::extract::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::merge::*` [INFO] [stdout] --> src/lib.rs:12:9 [INFO] [stdout] | [INFO] [stdout] 12 | pub use crate::merge::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::structs::*` [INFO] [stdout] --> src/lib.rs:13:9 [INFO] [stdout] | [INFO] [stdout] 13 | pub use crate::structs::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `skip_blank` [INFO] [stdout] --> src/extract/extract.rs:52:34 [INFO] [stdout] | [INFO] [stdout] 52 | line: String, format: usize, skip_blank: bool [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_skip_blank` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `out` [INFO] [stdout] --> src/extract/extract.rs:190:9 [INFO] [stdout] | [INFO] [stdout] 190 | let out = String::new(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_out` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `noncoding` [INFO] [stdout] --> src/extract/extract.rs:339:9 [INFO] [stdout] | [INFO] [stdout] 339 | let noncoding: bool = thick_start == thick_end; [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_noncoding` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/extract/extract.rs:525:9 [INFO] [stdout] | [INFO] [stdout] 525 | let mut output = BedEntry::bed12( [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `output` [INFO] [stdout] --> src/structs/structs.rs:81:17 [INFO] [stdout] | [INFO] [stdout] 81 | let mut output: BedEntry = BedEntry::empty(); [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_output` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `format` [INFO] [stdout] --> src/structs/structs.rs:82:17 [INFO] [stdout] | [INFO] [stdout] 82 | let mut format: u8 = 0; [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_format` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/structs/structs.rs:81:13 [INFO] [stdout] | [INFO] [stdout] 81 | let mut output: BedEntry = BedEntry::empty(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/structs/structs.rs:82:13 [INFO] [stdout] | [INFO] [stdout] 82 | let mut format: u8 = 0; [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `chrom` [INFO] [stdout] --> src/structs/structs.rs:361:13 [INFO] [stdout] | [INFO] [stdout] 361 | let chrom: &str = match &self.chrom { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_chrom` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `thin_start` [INFO] [stdout] --> src/structs/structs.rs:365:13 [INFO] [stdout] | [INFO] [stdout] 365 | let thin_start: u64 = match self.thin_start { [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_thin_start` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `name` [INFO] [stdout] --> src/structs/structs.rs:369:13 [INFO] [stdout] | [INFO] [stdout] 369 | let name: &str = match &self.name { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `x` [INFO] [stdout] --> src/structs/structs.rs:391:19 [INFO] [stdout] | [INFO] [stdout] 391 | (Some(x), Some(y), Some(z)) => { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_x` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `x` [INFO] [stdout] --> src/structs/structs.rs:434:25 [INFO] [stdout] | [INFO] [stdout] 434 | if let Some(x) = Some(new_ex_num) { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_x` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/structs/structs.rs:373:13 [INFO] [stdout] | [INFO] [stdout] 373 | let mut new_thin_start: u64 = match start { [INFO] [stdout] | ----^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/structs/structs.rs:381:13 [INFO] [stdout] | [INFO] [stdout] 381 | let mut new_thick_start = match self.thick_start { [INFO] [stdout] | ----^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `new_name` [INFO] [stdout] --> src/structs/structs.rs:1467:31 [INFO] [stdout] | [INFO] [stdout] 1467 | fn update_name(&mut self, new_name: &str ) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_new_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `new_name` [INFO] [stdout] --> src/structs/structs.rs:1493:31 [INFO] [stdout] | [INFO] [stdout] 1493 | fn update_name(&mut self, new_name: &str ) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_new_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `new_name` [INFO] [stdout] --> src/structs/structs.rs:1519:31 [INFO] [stdout] | [INFO] [stdout] 1519 | fn update_name(&mut self, new_name: &str ) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_new_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 8.91s [INFO] running `Command { std: "docker" "inspect" "cc965b27ecb9e6c2d0ce66946a91b3f15604bf181137ec6756e8395c851f15ae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cc965b27ecb9e6c2d0ce66946a91b3f15604bf181137ec6756e8395c851f15ae", kill_on_drop: false }` [INFO] [stdout] cc965b27ecb9e6c2d0ce66946a91b3f15604bf181137ec6756e8395c851f15ae [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3c0c2a6e8714bb90364b9ffae81eed318d6343210ccead8a7b37401fdeb382f1 [INFO] running `Command { std: "docker" "start" "-a" "3c0c2a6e8714bb90364b9ffae81eed318d6343210ccead8a7b37401fdeb382f1", kill_on_drop: false }` [INFO] [stderr] warning: `edition` is set on binary `bed12ToFraction` which is deprecated [INFO] [stdout] warning: hidden lifetime parameters in types are deprecated [INFO] [stdout] --> src/extract/extract.rs:26:37 [INFO] [stdout] | [INFO] [stdout] 26 | fn fmt(&self, f: &mut std::fmt::Formatter) -> std::fmt::Result { [INFO] [stdout] | ----------^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | expected lifetime parameter [INFO] [stdout] | [INFO] [stdout] note: the lint level is defined here [INFO] [stdout] --> src/lib.rs:5:9 [INFO] [stdout] | [INFO] [stdout] 5 | #![warn(rust_2018_idioms)] [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] = note: `#[warn(elided_lifetimes_in_paths)]` implied by `#[warn(rust_2018_idioms)]` [INFO] [stdout] help: indicate the anonymous lifetime [INFO] [stdout] | [INFO] [stdout] 26 | fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `parse_bed` and `to_line` [INFO] [stdout] --> src/structs/structs.rs:3:31 [INFO] [stdout] | [INFO] [stdout] 3 | use crate::extract::extract::{parse_bed, to_line}; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::extract::*` [INFO] [stdout] --> src/lib.rs:11:9 [INFO] [stdout] | [INFO] [stdout] 11 | pub use crate::extract::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::merge::*` [INFO] [stdout] --> src/lib.rs:12:9 [INFO] [stdout] | [INFO] [stdout] 12 | pub use crate::merge::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::structs::*` [INFO] [stdout] --> src/lib.rs:13:9 [INFO] [stdout] | [INFO] [stdout] 13 | pub use crate::structs::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `skip_blank` [INFO] [stdout] --> src/extract/extract.rs:52:34 [INFO] [stdout] | [INFO] [stdout] 52 | line: String, format: usize, skip_blank: bool [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_skip_blank` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `out` [INFO] [stdout] --> src/extract/extract.rs:190:9 [INFO] [stdout] | [INFO] [stdout] 190 | let out = String::new(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_out` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `noncoding` [INFO] [stdout] --> src/extract/extract.rs:339:9 [INFO] [stdout] | [INFO] [stdout] 339 | let noncoding: bool = thick_start == thick_end; [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_noncoding` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/extract/extract.rs:525:9 [INFO] [stdout] | [INFO] [stdout] 525 | let mut output = BedEntry::bed12( [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `output` [INFO] [stdout] --> src/structs/structs.rs:81:17 [INFO] [stdout] | [INFO] [stdout] 81 | let mut output: BedEntry = BedEntry::empty(); [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_output` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `format` [INFO] [stdout] --> src/structs/structs.rs:82:17 [INFO] [stdout] | [INFO] [stdout] 82 | let mut format: u8 = 0; [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_format` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/structs/structs.rs:81:13 [INFO] [stdout] | [INFO] [stdout] 81 | let mut output: BedEntry = BedEntry::empty(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/structs/structs.rs:82:13 [INFO] [stdout] | [INFO] [stdout] 82 | let mut format: u8 = 0; [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `chrom` [INFO] [stdout] --> src/structs/structs.rs:361:13 [INFO] [stdout] | [INFO] [stdout] 361 | let chrom: &str = match &self.chrom { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_chrom` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `thin_start` [INFO] [stdout] --> src/structs/structs.rs:365:13 [INFO] [stdout] | [INFO] [stdout] 365 | let thin_start: u64 = match self.thin_start { [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_thin_start` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `name` [INFO] [stdout] --> src/structs/structs.rs:369:13 [INFO] [stdout] | [INFO] [stdout] 369 | let name: &str = match &self.name { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `x` [INFO] [stdout] --> src/structs/structs.rs:391:19 [INFO] [stdout] | [INFO] [stdout] 391 | (Some(x), Some(y), Some(z)) => { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_x` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `x` [INFO] [stdout] --> src/structs/structs.rs:434:25 [INFO] [stdout] | [INFO] [stdout] 434 | if let Some(x) = Some(new_ex_num) { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_x` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/structs/structs.rs:373:13 [INFO] [stdout] | [INFO] [stdout] 373 | let mut new_thin_start: u64 = match start { [INFO] [stdout] | ----^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/structs/structs.rs:381:13 [INFO] [stdout] | [INFO] [stdout] 381 | let mut new_thick_start = match self.thick_start { [INFO] [stdout] | ----^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `new_name` [INFO] [stdout] --> src/structs/structs.rs:1467:31 [INFO] [stdout] | [INFO] [stdout] 1467 | fn update_name(&mut self, new_name: &str ) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_new_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `new_name` [INFO] [stdout] --> src/structs/structs.rs:1493:31 [INFO] [stdout] | [INFO] [stdout] 1493 | fn update_name(&mut self, new_name: &str ) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_new_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `new_name` [INFO] [stdout] --> src/structs/structs.rs:1519:31 [INFO] [stdout] | [INFO] [stdout] 1519 | fn update_name(&mut self, new_name: &str ) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_new_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling cubiculum v0.1.50 (/opt/rustwide/workdir) [INFO] [stdout] warning: hidden lifetime parameters in types are deprecated [INFO] [stdout] --> src/extract/extract.rs:26:37 [INFO] [stdout] | [INFO] [stdout] 26 | fn fmt(&self, f: &mut std::fmt::Formatter) -> std::fmt::Result { [INFO] [stdout] | ----------^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | expected lifetime parameter [INFO] [stdout] | [INFO] [stdout] note: the lint level is defined here [INFO] [stdout] --> src/lib.rs:5:9 [INFO] [stdout] | [INFO] [stdout] 5 | #![warn(rust_2018_idioms)] [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] = note: `#[warn(elided_lifetimes_in_paths)]` implied by `#[warn(rust_2018_idioms)]` [INFO] [stdout] help: indicate the anonymous lifetime [INFO] [stdout] | [INFO] [stdout] 26 | fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::extract::extract` [INFO] [stdout] --> src/extract/extract.rs:886:9 [INFO] [stdout] | [INFO] [stdout] 886 | use crate::extract::extract; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::extract::*` [INFO] [stdout] --> src/lib.rs:11:9 [INFO] [stdout] | [INFO] [stdout] 11 | pub use crate::extract::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::merge::*` [INFO] [stdout] --> src/lib.rs:12:9 [INFO] [stdout] | [INFO] [stdout] 12 | pub use crate::merge::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::structs::*` [INFO] [stdout] --> src/lib.rs:13:9 [INFO] [stdout] | [INFO] [stdout] 13 | pub use crate::structs::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `skip_blank` [INFO] [stdout] --> src/extract/extract.rs:52:34 [INFO] [stdout] | [INFO] [stdout] 52 | line: String, format: usize, skip_blank: bool [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_skip_blank` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `out` [INFO] [stdout] --> src/extract/extract.rs:190:9 [INFO] [stdout] | [INFO] [stdout] 190 | let out = String::new(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_out` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `noncoding` [INFO] [stdout] --> src/extract/extract.rs:339:9 [INFO] [stdout] | [INFO] [stdout] 339 | let noncoding: bool = thick_start == thick_end; [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_noncoding` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/extract/extract.rs:525:9 [INFO] [stdout] | [INFO] [stdout] 525 | let mut output = BedEntry::bed12( [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `output` [INFO] [stdout] --> src/structs/structs.rs:81:17 [INFO] [stdout] | [INFO] [stdout] 81 | let mut output: BedEntry = BedEntry::empty(); [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_output` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `format` [INFO] [stdout] --> src/structs/structs.rs:82:17 [INFO] [stdout] | [INFO] [stdout] 82 | let mut format: u8 = 0; [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_format` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/structs/structs.rs:81:13 [INFO] [stdout] | [INFO] [stdout] 81 | let mut output: BedEntry = BedEntry::empty(); [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/structs/structs.rs:82:13 [INFO] [stdout] | [INFO] [stdout] 82 | let mut format: u8 = 0; [INFO] [stdout] | ----^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `chrom` [INFO] [stdout] --> src/structs/structs.rs:361:13 [INFO] [stdout] | [INFO] [stdout] 361 | let chrom: &str = match &self.chrom { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_chrom` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `thin_start` [INFO] [stdout] --> src/structs/structs.rs:365:13 [INFO] [stdout] | [INFO] [stdout] 365 | let thin_start: u64 = match self.thin_start { [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_thin_start` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `name` [INFO] [stdout] --> src/structs/structs.rs:369:13 [INFO] [stdout] | [INFO] [stdout] 369 | let name: &str = match &self.name { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `x` [INFO] [stdout] --> src/structs/structs.rs:391:19 [INFO] [stdout] | [INFO] [stdout] 391 | (Some(x), Some(y), Some(z)) => { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_x` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `x` [INFO] [stdout] --> src/structs/structs.rs:434:25 [INFO] [stdout] | [INFO] [stdout] 434 | if let Some(x) = Some(new_ex_num) { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_x` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/structs/structs.rs:373:13 [INFO] [stdout] | [INFO] [stdout] 373 | let mut new_thin_start: u64 = match start { [INFO] [stdout] | ----^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/structs/structs.rs:381:13 [INFO] [stdout] | [INFO] [stdout] 381 | let mut new_thick_start = match self.thick_start { [INFO] [stdout] | ----^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `grafted` [INFO] [stdout] --> src/structs/structs.rs:767:13 [INFO] [stdout] | [INFO] [stdout] 767 | let grafted = input.graft( [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_grafted` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `grafted` [INFO] [stdout] --> src/structs/structs.rs:782:13 [INFO] [stdout] | [INFO] [stdout] 782 | let grafted = input.graft( [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_grafted` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `grafted` [INFO] [stdout] --> src/structs/structs.rs:797:13 [INFO] [stdout] | [INFO] [stdout] 797 | let grafted = input.graft( [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_grafted` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `grafted` [INFO] [stdout] --> src/structs/structs.rs:823:13 [INFO] [stdout] | [INFO] [stdout] 823 | let grafted = input.graft( [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_grafted` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `grafted` [INFO] [stdout] --> src/structs/structs.rs:839:13 [INFO] [stdout] | [INFO] [stdout] 839 | let grafted = input.graft( [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_grafted` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `grafted` [INFO] [stdout] --> src/structs/structs.rs:855:13 [INFO] [stdout] | [INFO] [stdout] 855 | let grafted = input.graft( [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_grafted` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `graft2` [INFO] [stdout] --> src/structs/structs.rs:980:13 [INFO] [stdout] | [INFO] [stdout] 980 | let graft2 = parse_bed( [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_graft2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `new_name` [INFO] [stdout] --> src/structs/structs.rs:1467:31 [INFO] [stdout] | [INFO] [stdout] 1467 | fn update_name(&mut self, new_name: &str ) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_new_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `new_name` [INFO] [stdout] --> src/structs/structs.rs:1493:31 [INFO] [stdout] | [INFO] [stdout] 1493 | fn update_name(&mut self, new_name: &str ) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_new_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `new_name` [INFO] [stdout] --> src/structs/structs.rs:1519:31 [INFO] [stdout] | [INFO] [stdout] 1519 | fn update_name(&mut self, new_name: &str ) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_new_name` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.19s [INFO] running `Command { std: "docker" "inspect" "3c0c2a6e8714bb90364b9ffae81eed318d6343210ccead8a7b37401fdeb382f1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3c0c2a6e8714bb90364b9ffae81eed318d6343210ccead8a7b37401fdeb382f1", kill_on_drop: false }` [INFO] [stdout] 3c0c2a6e8714bb90364b9ffae81eed318d6343210ccead8a7b37401fdeb382f1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 3f2bafeff43b2a55130d7901a1c0cfea30c66926f679d7ad0594243a46a16be8 [INFO] running `Command { std: "docker" "start" "-a" "3f2bafeff43b2a55130d7901a1c0cfea30c66926f679d7ad0594243a46a16be8", kill_on_drop: false }` [INFO] [stderr] warning: `edition` is set on binary `bed12ToFraction` which is deprecated [INFO] [stderr] warning: hidden lifetime parameters in types are deprecated [INFO] [stderr] --> src/extract/extract.rs:26:37 [INFO] [stderr] | [INFO] [stderr] 26 | fn fmt(&self, f: &mut std::fmt::Formatter) -> std::fmt::Result { [INFO] [stderr] | ----------^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | expected lifetime parameter [INFO] [stderr] | [INFO] [stderr] note: the lint level is defined here [INFO] [stderr] --> src/lib.rs:5:9 [INFO] [stderr] | [INFO] [stderr] 5 | #![warn(rust_2018_idioms)] [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] = note: `#[warn(elided_lifetimes_in_paths)]` implied by `#[warn(rust_2018_idioms)]` [INFO] [stderr] help: indicate the anonymous lifetime [INFO] [stderr] | [INFO] [stderr] 26 | fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `parse_bed` and `to_line` [INFO] [stderr] --> src/structs/structs.rs:3:31 [INFO] [stderr] | [INFO] [stderr] 3 | use crate::extract::extract::{parse_bed, to_line}; [INFO] [stderr] | ^^^^^^^^^ ^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `crate::extract::*` [INFO] [stderr] --> src/lib.rs:11:9 [INFO] [stderr] | [INFO] [stderr] 11 | pub use crate::extract::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `crate::merge::*` [INFO] [stderr] --> src/lib.rs:12:9 [INFO] [stderr] | [INFO] [stderr] 12 | pub use crate::merge::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `crate::structs::*` [INFO] [stderr] --> src/lib.rs:13:9 [INFO] [stderr] | [INFO] [stderr] 13 | pub use crate::structs::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `skip_blank` [INFO] [stderr] --> src/extract/extract.rs:52:34 [INFO] [stderr] | [INFO] [stderr] 52 | line: String, format: usize, skip_blank: bool [INFO] [stderr] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_skip_blank` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `out` [INFO] [stderr] --> src/extract/extract.rs:190:9 [INFO] [stderr] | [INFO] [stderr] 190 | let out = String::new(); [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_out` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `noncoding` [INFO] [stderr] --> src/extract/extract.rs:339:9 [INFO] [stderr] | [INFO] [stderr] 339 | let noncoding: bool = thick_start == thick_end; [INFO] [stderr] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_noncoding` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/extract/extract.rs:525:9 [INFO] [stderr] | [INFO] [stderr] 525 | let mut output = BedEntry::bed12( [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `output` [INFO] [stderr] --> src/structs/structs.rs:81:17 [INFO] [stderr] | [INFO] [stderr] 81 | let mut output: BedEntry = BedEntry::empty(); [INFO] [stderr] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_output` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `format` [INFO] [stderr] --> src/structs/structs.rs:82:17 [INFO] [stderr] | [INFO] [stderr] 82 | let mut format: u8 = 0; [INFO] [stderr] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_format` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/structs/structs.rs:81:13 [INFO] [stderr] | [INFO] [stderr] 81 | let mut output: BedEntry = BedEntry::empty(); [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/structs/structs.rs:82:13 [INFO] [stderr] | [INFO] [stderr] 82 | let mut format: u8 = 0; [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `chrom` [INFO] [stderr] --> src/structs/structs.rs:361:13 [INFO] [stderr] | [INFO] [stderr] 361 | let chrom: &str = match &self.chrom { [INFO] [stderr] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_chrom` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `thin_start` [INFO] [stderr] --> src/structs/structs.rs:365:13 [INFO] [stderr] | [INFO] [stderr] 365 | let thin_start: u64 = match self.thin_start { [INFO] [stderr] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_thin_start` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `name` [INFO] [stderr] --> src/structs/structs.rs:369:13 [INFO] [stderr] | [INFO] [stderr] 369 | let name: &str = match &self.name { [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_name` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `x` [INFO] [stderr] --> src/structs/structs.rs:391:19 [INFO] [stderr] | [INFO] [stderr] 391 | (Some(x), Some(y), Some(z)) => { [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_x` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `x` [INFO] [stderr] --> src/structs/structs.rs:434:25 [INFO] [stderr] | [INFO] [stderr] 434 | if let Some(x) = Some(new_ex_num) { [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_x` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/structs/structs.rs:373:13 [INFO] [stderr] | [INFO] [stderr] 373 | let mut new_thin_start: u64 = match start { [INFO] [stderr] | ----^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/structs/structs.rs:381:13 [INFO] [stderr] | [INFO] [stderr] 381 | let mut new_thick_start = match self.thick_start { [INFO] [stderr] | ----^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `new_name` [INFO] [stderr] --> src/structs/structs.rs:1467:31 [INFO] [stderr] | [INFO] [stderr] 1467 | fn update_name(&mut self, new_name: &str ) { [INFO] [stderr] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_new_name` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `new_name` [INFO] [stderr] --> src/structs/structs.rs:1493:31 [INFO] [stderr] | [INFO] [stderr] 1493 | fn update_name(&mut self, new_name: &str ) { [INFO] [stderr] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_new_name` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `new_name` [INFO] [stderr] --> src/structs/structs.rs:1519:31 [INFO] [stderr] | [INFO] [stderr] 1519 | fn update_name(&mut self, new_name: &str ) { [INFO] [stderr] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_new_name` [INFO] [stderr] [INFO] [stderr] warning: unused import: `crate::extract::extract` [INFO] [stderr] --> src/extract/extract.rs:886:9 [INFO] [stderr] | [INFO] [stderr] 886 | use crate::extract::extract; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `grafted` [INFO] [stderr] --> src/structs/structs.rs:767:13 [INFO] [stderr] | [INFO] [stderr] 767 | let grafted = input.graft( [INFO] [stderr] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_grafted` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `grafted` [INFO] [stderr] --> src/structs/structs.rs:782:13 [INFO] [stderr] | [INFO] [stderr] 782 | let grafted = input.graft( [INFO] [stderr] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_grafted` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `grafted` [INFO] [stderr] --> src/structs/structs.rs:797:13 [INFO] [stderr] | [INFO] [stderr] 797 | let grafted = input.graft( [INFO] [stderr] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_grafted` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `grafted` [INFO] [stderr] --> src/structs/structs.rs:823:13 [INFO] [stderr] | [INFO] [stderr] 823 | let grafted = input.graft( [INFO] [stderr] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_grafted` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `grafted` [INFO] [stderr] --> src/structs/structs.rs:839:13 [INFO] [stderr] | [INFO] [stderr] 839 | let grafted = input.graft( [INFO] [stderr] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_grafted` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `grafted` [INFO] [stderr] --> src/structs/structs.rs:855:13 [INFO] [stderr] | [INFO] [stderr] 855 | let grafted = input.graft( [INFO] [stderr] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_grafted` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `graft2` [INFO] [stderr] --> src/structs/structs.rs:980:13 [INFO] [stderr] | [INFO] [stderr] 980 | let graft2 = parse_bed( [INFO] [stderr] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_graft2` [INFO] [stderr] [INFO] [stderr] warning: `cubiculum` (lib) generated 23 warnings (run `cargo fix --lib -p cubiculum` to apply 9 suggestions) [INFO] [stderr] warning: `cubiculum` (lib test) generated 30 warnings (22 duplicates) (run `cargo fix --lib -p cubiculum --tests` to apply 1 suggestion) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/cubiculum-7b340e27e6c88b81) [INFO] [stdout] [INFO] [stdout] running 50 tests [INFO] [stdout] test extract::extract::test_cmd_function::all_bed6_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::cds_bed6_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::cds_exon_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::basic_cds_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::fiveprime_utr_forward_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::fiveprime_utr_intron_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::cds_intron_bed6_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::fiveprime_utr_multiintron_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::all_intron_bed6_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::fiveprime_utr_noncoding_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::fiveprime_utr_reverse_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::full_utr_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::full_utr_noncoding_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::intron_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::no_utr_intron_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::no_utr_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::basic_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::single_exon_cds_with_utrs ... ok [INFO] [stdout] test extract::extract::test_cmd_function::threeprime_utr_positive_strand_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::threeprime_utr_reverse_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::utr_intron_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::uuu ... ok [INFO] [stdout] test extract::extract::test_cmd_function::zero_intron_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::zero_intron_with_utrs_test ... ok [INFO] [stdout] test extract::extract::test_extract::all_intron_test ... ok [INFO] [stdout] test extract::extract::test_extract::double_utr_test ... ok [INFO] [stdout] test extract::extract::test_extract::uu ... ok [INFO] [stdout] test merge::merge::discretizer_test::discretizer_identical ... ok [INFO] [stdout] test merge::merge::discretizer_test::discretizer_nested_overlap ... ok [INFO] [stdout] test merge::merge::discretizer_test::discretizer_shared_start ... ok [INFO] [stdout] test merge::merge::discretizer_test::discretizer_simple_overlap ... ok [INFO] [stdout] test merge::merge::discretizer_test::discretizer_three_intervals ... ok [INFO] [stdout] test merge::merge::discretizer_test::real_life_test ... ok [INFO] [stdout] test structs::structs::test_graft::graft_both_with_overlaps ... ok [INFO] [stdout] test structs::structs::test_graft::graft_problematic2 ... ok [INFO] [stdout] test structs::structs::test_graft::graft_problematic3 ... ok [INFO] [stdout] test structs::structs::test_graft::graft_problematic1 ... ok [INFO] [stdout] test extract::extract::test_cmd_function::threeprime_utr_forward_test ... ok [INFO] [stdout] test extract::extract::test_cmd_function::threeprime_utr_intron_test ... ok [INFO] [stdout] test structs::structs::test_graft::graft_problematic5 ... ok [INFO] [stdout] test structs::structs::test_graft::test_graft_both ... ok [INFO] [stdout] test structs::structs::test_graft::graft_problematic4 ... ok [INFO] [stdout] test structs::structs::test_graft::test_graft_upstream ... ok [INFO] [stdout] test structs::structs::test_graft::test_graft_downstream ... ok [INFO] [stdout] test extract::extract::test_cmd_function::invalid_mode_test - should panic ... ok [INFO] [stdout] test extract::extract::test_cmd_function::invalid_value - should panic ... ok [INFO] [stdout] test extract::extract::test_cmd_function::negative_length - should panic ... ok [INFO] [stdout] test extract::extract::test_cmd_function::out_of_boundary_cds - should panic ... ok [INFO] [stdout] test extract::extract::test_cmd_function::truncated_line_test - should panic ... ok [INFO] [stdout] test extract::extract::test_extract::intron_test ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- extract::extract::test_extract::intron_test stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'extract::extract::test_extract::intron_test' panicked at src/extract/extract.rs:569:9: [INFO] [stdout] assertion `left == right` failed [INFO] [stdout] left: "chr9\t101363015\t101370938\tA\t0\t-\t101370938\t101370938\t0\t2\t5104,2616,\t0,5307," [INFO] [stdout] right: "chr9\t101363015\t101384854\tA\t0\t-\t101384854\t101384854\t0\t3\t5104,2616,13391,\t0,5307,8448," [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x5a51b531cb22 - std::backtrace_rs::backtrace::libunwind::trace::h2d45396358f41939 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x5a51b531cb22 - std::backtrace_rs::backtrace::trace_unsynchronized::hffcefc0b67f1d6e2 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x5a51b531cb22 - std::sys::backtrace::_print_fmt::hd72f71d23b436b92 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x5a51b531cb22 - ::fmt::hdcfcb6d4c8489523 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x5a51b5342163 - core::fmt::rt::Argument::fmt::h2c56b3114963061a [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x5a51b5342163 - core::fmt::write::h8a494366950f23bb [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/fmt/mod.rs:1468:25 [INFO] [stdout] 6: 0x5a51b5319aa3 - std::io::default_write_fmt::h7b8824096454f323 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x5a51b5319aa3 - std::io::Write::write_fmt::h4e71294925c334d0 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x5a51b531c972 - std::sys::backtrace::BacktraceLock::print::hb2a626a81e06b2dc [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x5a51b531e099 - std::panicking::default_hook::{{closure}}::h4f78485264f12d10 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:300:27 [INFO] [stdout] 10: 0x5a51b531dece - std::panicking::default_hook::h2c66fc99e962531d [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:324:9 [INFO] [stdout] 11: 0x5a51b52e5f54 - as core::ops::function::Fn>::call::hb6bd65493727d71a [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 12: 0x5a51b52e5f54 - test::test_main_with_exit_callback::{{closure}}::h60217ec76a0ece4a [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x5a51b531ea6e - as core::ops::function::Fn>::call::h318e4efb8c1a5689 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 14: 0x5a51b531ea6e - std::panicking::rust_panic_with_hook::h33ac55f64bbd807d [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:841:13 [INFO] [stdout] 15: 0x5a51b531e83a - std::panicking::begin_panic_handler::{{closure}}::h30e7cb89678a57fe [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:706:13 [INFO] [stdout] 16: 0x5a51b531d019 - std::sys::backtrace::__rust_end_short_backtrace::hed60f27456c16ced [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 17: 0x5a51b531e4cd - __rustc[de2ca18b4c54d5b8]::rust_begin_unwind [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:697:5 [INFO] [stdout] 18: 0x5a51b53408e0 - core::panicking::panic_fmt::h62f63d096dd276af [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x5a51b5340c33 - core::panicking::assert_failed_inner::h102b4539a88470c2 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panicking.rs:448:17 [INFO] [stdout] 20: 0x5a51b527a1f6 - core::panicking::assert_failed::h8b0f77547a4ead2e [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panicking.rs:403:5 [INFO] [stdout] 21: 0x5a51b52a4701 - cubiculum::extract::extract::test_extract::intron_test::h2d0f0d87dcc6c908 [INFO] [stdout] at /opt/rustwide/workdir/src/extract/extract.rs:569:9 [INFO] [stdout] 22: 0x5a51b52a4287 - cubiculum::extract::extract::test_extract::intron_test::{{closure}}::h32ccc62502e686b8 [INFO] [stdout] at /opt/rustwide/workdir/src/extract/extract.rs:560:21 [INFO] [stdout] 23: 0x5a51b5284286 - core::ops::function::FnOnce::call_once::hdc98de01d5c72beb [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 24: 0x5a51b52eb7bb - core::ops::function::FnOnce::call_once::h1f9474f1347fff52 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 25: 0x5a51b52eb7bb - test::__rust_begin_short_backtrace::ha52ab26e77157f03 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:648:18 [INFO] [stdout] 26: 0x5a51b52ea8f5 - test::run_test_in_process::{{closure}}::h229c1a11a50b261f [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:671:74 [INFO] [stdout] 27: 0x5a51b52ea8f5 - as core::ops::function::FnOnce<()>>::call_once::h78821afbf97b39a9 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 28: 0x5a51b52ea8f5 - std::panicking::catch_unwind::do_call::h53abf3ed5bd32ba3 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:589:40 [INFO] [stdout] 29: 0x5a51b52ea8f5 - std::panicking::catch_unwind::h6deb5fe1e91873c9 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:552:19 [INFO] [stdout] 30: 0x5a51b52ea8f5 - std::panic::catch_unwind::hea0829b6b565654b [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x5a51b52ea8f5 - test::run_test_in_process::hdc44dfecea3db21b [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:671:27 [INFO] [stdout] 32: 0x5a51b52ea8f5 - test::run_test::{{closure}}::h0364ba59bf23f652 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:592:43 [INFO] [stdout] 33: 0x5a51b52ae4f4 - test::run_test::{{closure}}::h32730b304eec05da [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:622:41 [INFO] [stdout] 34: 0x5a51b52ae4f4 - std::sys::backtrace::__rust_begin_short_backtrace::h177cb952fc54ad2c [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:158:18 [INFO] [stdout] 35: 0x5a51b52b1eca - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h119d903520007597 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 36: 0x5a51b52b1eca - as core::ops::function::FnOnce<()>>::call_once::hab88401d606702a6 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 37: 0x5a51b52b1eca - std::panicking::catch_unwind::do_call::h163fe12cca9901c2 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:589:40 [INFO] [stdout] 38: 0x5a51b52b1eca - std::panicking::catch_unwind::he81557d0e17cc1bc [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:552:19 [INFO] [stdout] 39: 0x5a51b52b1eca - std::panic::catch_unwind::hc2b8e79c20593955 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x5a51b52b1eca - std::thread::Builder::spawn_unchecked_::{{closure}}::hfa6b4978e07815cc [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 41: 0x5a51b52b1eca - core::ops::function::FnOnce::call_once{{vtable.shim}}::hddcd7484a13fd793 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 42: 0x5a51b53219ef - as core::ops::function::FnOnce>::call_once::h5924238c754de3b8 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/alloc/src/boxed.rs:1971:9 [INFO] [stdout] 43: 0x5a51b53219ef - std::sys::pal::unix::thread::Thread::new::thread_start::hb6e99e73da4d28f8 [INFO] [stdout] at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/pal/unix/thread.rs:107:17 [INFO] [stdout] 44: 0x77bdb7c54aa4 - [INFO] [stdout] 45: 0x77bdb7ce1a34 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] extract::extract::test_extract::intron_test [INFO] [stdout] [INFO] [stdout] test result: FAILED. 49 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--lib` [INFO] running `Command { std: "docker" "inspect" "3f2bafeff43b2a55130d7901a1c0cfea30c66926f679d7ad0594243a46a16be8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3f2bafeff43b2a55130d7901a1c0cfea30c66926f679d7ad0594243a46a16be8", kill_on_drop: false }` [INFO] [stdout] 3f2bafeff43b2a55130d7901a1c0cfea30c66926f679d7ad0594243a46a16be8