[INFO] fetching crate hmm_tblout 0.4.23...
[INFO] testing hmm_tblout-0.4.23 against 1.90.0 for beta-1.91-2
[INFO] extracting crate hmm_tblout 0.4.23 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate hmm_tblout 0.4.23
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate hmm_tblout 0.4.23
[INFO] tweaked toml for crates.io crate hmm_tblout 0.4.23 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate hmm_tblout 0.4.23 on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate hmm_tblout 0.4.23 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9b5b5aa3e22dda6d3659c0ad5a86e4ed2c17b2fbef6180b720cd82e0cdade615
[INFO] running `Command { std: "docker" "start" "-a" "9b5b5aa3e22dda6d3659c0ad5a86e4ed2c17b2fbef6180b720cd82e0cdade615", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9b5b5aa3e22dda6d3659c0ad5a86e4ed2c17b2fbef6180b720cd82e0cdade615", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9b5b5aa3e22dda6d3659c0ad5a86e4ed2c17b2fbef6180b720cd82e0cdade615", kill_on_drop: false }`
[INFO] [stdout] 9b5b5aa3e22dda6d3659c0ad5a86e4ed2c17b2fbef6180b720cd82e0cdade615
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 91944af0ab1b55c0b822e917726f8bdf1c136d6044ddcb806ecfc04669f2609f
[INFO] running `Command { std: "docker" "start" "-a" "91944af0ab1b55c0b822e917726f8bdf1c136d6044ddcb806ecfc04669f2609f", kill_on_drop: false }`
[INFO] [stderr]    Compiling hmm_tblout v0.4.23 (/opt/rustwide/workdir)
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]    --> src/reader.rs:476:20
[INFO] [stdout]     |
[INFO] [stdout] 476 |     pub fn records(&mut self) -> RecordsIter<R> {
[INFO] [stdout]     |                    ^^^^^^^^^     -------------- the same lifetime is hidden here
[INFO] [stdout]     |                    |
[INFO] [stdout]     |                    the lifetime is elided here
[INFO] [stdout]     |
[INFO] [stdout]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]     |
[INFO] [stdout] 476 |     pub fn records(&mut self) -> RecordsIter<'_, R> {
[INFO] [stdout]     |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.53s
[INFO] running `Command { std: "docker" "inspect" "91944af0ab1b55c0b822e917726f8bdf1c136d6044ddcb806ecfc04669f2609f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "91944af0ab1b55c0b822e917726f8bdf1c136d6044ddcb806ecfc04669f2609f", kill_on_drop: false }`
[INFO] [stdout] 91944af0ab1b55c0b822e917726f8bdf1c136d6044ddcb806ecfc04669f2609f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a5b1572bad1d6ba7e5ad7e829587f825d1a6755b947fa4d1e3e93692ca05ac27
[INFO] running `Command { std: "docker" "start" "-a" "a5b1572bad1d6ba7e5ad7e829587f825d1a6755b947fa4d1e3e93692ca05ac27", kill_on_drop: false }`
[INFO] [stderr]    Compiling hmm_tblout v0.4.23 (/opt/rustwide/workdir)
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]    --> src/reader.rs:476:20
[INFO] [stdout]     |
[INFO] [stdout] 476 |     pub fn records(&mut self) -> RecordsIter<R> {
[INFO] [stdout]     |                    ^^^^^^^^^     -------------- the same lifetime is hidden here
[INFO] [stdout]     |                    |
[INFO] [stdout]     |                    the lifetime is elided here
[INFO] [stdout]     |
[INFO] [stdout]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]     |
[INFO] [stdout] 476 |     pub fn records(&mut self) -> RecordsIter<'_, R> {
[INFO] [stdout]     |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `NHMMSCAN_FILE` is never used
[INFO] [stdout]    --> src/lib.rs:140:11
[INFO] [stdout]     |
[INFO] [stdout] 140 |     const NHMMSCAN_FILE: &str = "# target name        accession  query name           accession  hmmfrom hmm to alifrom  ali to envfrom  ...
[INFO] [stdout]     |           ^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `HMMSCAN_FILE` is never used
[INFO] [stdout]    --> src/lib.rs:161:11
[INFO] [stdout]     |
[INFO] [stdout] 161 |     const HMMSCAN_FILE: &str = "#                                                               --- full sequence ---- --- best 1 domain ...
[INFO] [stdout]     |           ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `HMMSEARCH_FILE` is never used
[INFO] [stdout]    --> src/lib.rs:189:11
[INFO] [stdout]     |
[INFO] [stdout] 189 |     const HMMSEARCH_FILE: &str = "#                                                               --- full sequence ---- --- best 1 domai...
[INFO] [stdout]     |           ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]    --> src/reader.rs:476:20
[INFO] [stdout]     |
[INFO] [stdout] 476 |     pub fn records(&mut self) -> RecordsIter<R> {
[INFO] [stdout]     |                    ^^^^^^^^^     -------------- the same lifetime is hidden here
[INFO] [stdout]     |                    |
[INFO] [stdout]     |                    the lifetime is elided here
[INFO] [stdout]     |
[INFO] [stdout]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]     |
[INFO] [stdout] 476 |     pub fn records(&mut self) -> RecordsIter<'_, R> {
[INFO] [stdout]     |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.45s
[INFO] running `Command { std: "docker" "inspect" "a5b1572bad1d6ba7e5ad7e829587f825d1a6755b947fa4d1e3e93692ca05ac27", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a5b1572bad1d6ba7e5ad7e829587f825d1a6755b947fa4d1e3e93692ca05ac27", kill_on_drop: false }`
[INFO] [stdout] a5b1572bad1d6ba7e5ad7e829587f825d1a6755b947fa4d1e3e93692ca05ac27
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 26aacb2993c1c8fb649f9d0b9a2b4105f78d2b8cd4fb8b315c5ee5b6cfa003cd
[INFO] running `Command { std: "docker" "start" "-a" "26aacb2993c1c8fb649f9d0b9a2b4105f78d2b8cd4fb8b315c5ee5b6cfa003cd", kill_on_drop: false }`
[INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stderr]    --> src/reader.rs:476:20
[INFO] [stderr]     |
[INFO] [stderr] 476 |     pub fn records(&mut self) -> RecordsIter<R> {
[INFO] [stderr]     |                    ^^^^^^^^^     -------------- the same lifetime is hidden here
[INFO] [stderr]     |                    |
[INFO] [stderr]     |                    the lifetime is elided here
[INFO] [stderr]     |
[INFO] [stderr]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stderr]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stderr] help: use `'_` for type paths
[INFO] [stderr]     |
[INFO] [stderr] 476 |     pub fn records(&mut self) -> RecordsIter<'_, R> {
[INFO] [stderr]     |                                              +++
[INFO] [stderr] 
[INFO] [stderr] warning: `hmm_tblout` (lib) generated 1 warning
[INFO] [stderr] warning: constant `NHMMSCAN_FILE` is never used
[INFO] [stderr]    --> src/lib.rs:140:11
[INFO] [stderr]     |
[INFO] [stderr] 140 |     const NHMMSCAN_FILE: &str = "# target name        accession  query name           accession  hmmfrom hmm to alifrom  ali to envfrom  ...
[INFO] [stderr]     |           ^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: constant `HMMSCAN_FILE` is never used
[INFO] [stderr]    --> src/lib.rs:161:11
[INFO] [stderr]     |
[INFO] [stderr] 161 |     const HMMSCAN_FILE: &str = "#                                                               --- full sequence ---- --- best 1 domain ...
[INFO] [stderr]     |           ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: constant `HMMSEARCH_FILE` is never used
[INFO] [stderr]    --> src/lib.rs:189:11
[INFO] [stderr]     |
[INFO] [stderr] 189 |     const HMMSEARCH_FILE: &str = "#                                                               --- full sequence ---- --- best 1 domai...
[INFO] [stderr]     |           ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `hmm_tblout` (lib test) generated 4 warnings (1 duplicate)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.08s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/hmm_tblout-1699e576c256c02e)
[INFO] [stdout] 
[INFO] [stdout] running 10 tests
[INFO] [stdout] test tests::test_cmscan ... ok
[INFO] [stdout] test tests::test_meta ... ok
[INFO] [stdout] test tests::test_whole_file ... ok
[INFO] [stdout] test tests::test_phmmer_records ... ok
[INFO] [stdout] test tests::test_jackhmmer_records ... ok
[INFO] [stdout] test tests::test_jackhmmer_meta ... ok
[INFO] [stdout] test tests::test_header ... ok
[INFO] [stdout] test tests::in_same_as_out_n ... FAILED
[INFO] [stdout] test tests::test_phmmer_write ... FAILED
[INFO] [stdout] test tests::in_same_as_out ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- tests::in_same_as_out_n stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'tests::in_same_as_out_n' panicked at src/lib.rs:353:9:
[INFO] [stdout] assertion `left == right` failed
[INFO] [stdout]   left: "# target name        accession  query name           accession  hmmfrom hmm to  alifrom   ali to  envfrom   env to   sq len strand   E-value  score  bias  description of target\n#------------------- ---------- -------------------- ---------- ------- -------  -------  -------  -------  -------  ------- ------ --------- ------ ----- ---------------------\nSUPER_1              -          TR                   -                1     315 10988331 10987997 10988331 10987995 52766903   -      6.5e-34  124.1   1.2 -                    \nSUPER_3              -          TR                   -              139     204 17951382 17951472 17951359 17951492 49366223   +       7.4e-1   15.6     3 -                    \nSUPER_4              -          TR                   -               29     130 20542008 20542119 20541989 20542141 47284787   +        1.1e0   15.1   5.7 -                    \nSUPER_4              -          TR                   -               29     126 32993383 32993283 32993398 32993263 47284787   -        2.2e0   14.1     1 -                    \nSUPER_4              -          TR                   -               23     126 14861076 14861174 14861063 14861195 47284787   +        2.4e0   13.9   3.4 -                    \nSUPER_5              -          TR                   -               21     126 27641355 27641256 27641369 27641229 46997258   -        2.5e0   13.8   6.5 -                    \nSUPER_8              -          TR                   -              158     191 33162494 33162454 33162514 33162446 33878543   -        3.1e0   13.6     2 -                    \nSUPER_5              -          TR                   -              107     162 46228956 46228885 46228975 46228876 46997258   -        3.1e0   13.6     0 -                    \nSUPER_1              -          TR                   -               68     173 15697438 15697327 15697464 15697325 52766903   -        4.4e0   13.1   0.7 -                    \nSUPER_3              -          TR                   -               24     128 36147201 36147098 36147221 36147078 49366223   -        4.5e0     13   1.9 -                    \nSUPER_1              -          TR                   -                1      84 36988055 36987966 36988055 36987944 52766903   -        4.7e0     13   2.1 -                    \nSUPER_6              -          TR                   -               38     122 20863320 20863225 20863338 20863202 43664244   -          5e0   12.9   2.2 -                    \nSUPER_8              -          TR                   -                1      79 32349659 32349576 32349659 32349556 33878543   -        5.9e0   12.6   2.5 -                    \nSUPER_2              -          TR                   -               22     128 38320620 38320502 38320631 38320480 52745556   -        6.5e0   12.5     0 -                    \nSUPER_1              -          TR                   -                2      55  1602497  1602446  1602498  1602420 52766903   -        8.6e0   12.1   7.2 -                    \nSUPER_2              -          TR                   -                2     100 26735237 26735139 26735238 26735122 52745556   -          9e0     12   1.4 -                    \n#\n# Program:         nhmmer\n# Version:         3.4 (Aug 2023)\n# Pipeline mode:   SEARCH\n# Query file:      TR.hmm\n# Target file:     /lustre/scratch124/tol/projects/darwin/data/dicots/Misopates_orontium/assembly/curated/daMisOron1.1/daMisOron1.1.primary.fa.gz\n# Options:         /software/team301/hmmer-3.4/src/nhmmer --tblout Misopates_orontium.tbl --dna --cpu 10 TR.hmm /lustre/scratch124/tol/projects/darwin/data/dicots/Misopates_orontium/assembly/curated/daMisOron1.1/daMisOron1.1.primary.fa.gz\n# Current dir:     /lustre/scratch123/tol/teams/blaxter/users/mb39/ARU/tr_detection\n# Date:            Fri May  3 10:07:36 2024\n# [ok]"
[INFO] [stdout]  right: "# target name        accession  query name           accession  hmmfrom hmm to  alifrom   ali to  envfrom   env to   sq len strand   E-value  score  bias  description of target\n#------------------- ---------- -------------------- ---------- ------- -------  -------  -------  -------  -------  ------- ------ --------- ------ ----- ---------------------\nSUPER_1              -          TR                   -                1     315 10988331 10987997 10988331 10987995 52766903    -     6.5e-34  124.1   1.2  -\nSUPER_3              -          TR                   -              139     204 17951382 17951472 17951359 17951492 49366223    +        0.74   15.6   3.0  -\nSUPER_4              -          TR                   -               29     130 20542008 20542119 20541989 20542141 47284787    +         1.1   15.1   5.7  -\nSUPER_4              -          TR                   -               29     126 32993383 32993283 32993398 32993263 47284787    -         2.2   14.1   1.0  -\nSUPER_4              -          TR                   -               23     126 14861076 14861174 14861063 14861195 47284787    +         2.4   13.9   3.4  -\nSUPER_5              -          TR                   -               21     126 27641355 27641256 27641369 27641229 46997258    -         2.5   13.8   6.5  -\nSUPER_8              -          TR                   -              158     191 33162494 33162454 33162514 33162446 33878543    -         3.1   13.6   2.0  -\nSUPER_5              -          TR                   -              107     162 46228956 46228885 46228975 46228876 46997258    -         3.1   13.6   0.0  -\nSUPER_1              -          TR                   -               68     173 15697438 15697327 15697464 15697325 52766903    -         4.4   13.1   0.7  -\nSUPER_3              -          TR                   -               24     128 36147201 36147098 36147221 36147078 49366223    -         4.5   13.0   1.9  -\nSUPER_1              -          TR                   -                1      84 36988055 36987966 36988055 36987944 52766903    -         4.7   13.0   2.1  -\nSUPER_6              -          TR                   -               38     122 20863320 20863225 20863338 20863202 43664244    -           5   12.9   2.2  -\nSUPER_8              -          TR                   -                1      79 32349659 32349576 32349659 32349556 33878543    -         5.9   12.6   2.5  -\nSUPER_2              -          TR                   -               22     128 38320620 38320502 38320631 38320480 52745556    -         6.5   12.5   0.0  -\nSUPER_1              -          TR                   -                2      55  1602497  1602446  1602498  1602420 52766903    -         8.6   12.1   7.2  -\nSUPER_2              -          TR                   -                2     100 26735237 26735139 26735238 26735122 52745556    -           9   12.0   1.4  -\n#\n# Program:         nhmmer\n# Version:         3.4 (Aug 2023)\n# Pipeline mode:   SEARCH\n# Query file:      TR.hmm\n# Target file:     /lustre/scratch124/tol/projects/darwin/data/dicots/Misopates_orontium/assembly/curated/daMisOron1.1/daMisOron1.1.primary.fa.gz\n# Option settings: /software/team301/hmmer-3.4/src/nhmmer --tblout Misopates_orontium.tbl --dna --cpu 10 TR.hmm /lustre/scratch124/tol/projects/darwin/data/dicots/Misopates_orontium/assembly/curated/daMisOron1.1/daMisOron1.1.primary.fa.gz\n# Current dir:     /lustre/scratch123/tol/teams/blaxter/users/mb39/ARU/tr_detection\n# Date:            Fri May  3 10:07:36 2024\n# [ok]"
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x60170d8c3562 - std::backtrace_rs::backtrace::libunwind::trace::h2d45396358f41939
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x60170d8c3562 - std::backtrace_rs::backtrace::trace_unsynchronized::hffcefc0b67f1d6e2
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x60170d8c3562 - std::sys::backtrace::_print_fmt::hd72f71d23b436b92
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:66:9
[INFO] [stdout]    3:     0x60170d8c3562 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::hdcfcb6d4c8489523
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:39:26
[INFO] [stdout]    4:     0x60170d8ea893 - core::fmt::rt::Argument::fmt::h2c56b3114963061a
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/fmt/rt.rs:173:76
[INFO] [stdout]    5:     0x60170d8ea893 - core::fmt::write::h8a494366950f23bb
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/fmt/mod.rs:1468:25
[INFO] [stdout]    6:     0x60170d8c04d3 - std::io::default_write_fmt::h7b8824096454f323
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x60170d8c04d3 - std::io::Write::write_fmt::h4e71294925c334d0
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/io/mod.rs:1954:13
[INFO] [stdout]    8:     0x60170d8c33b2 - std::sys::backtrace::BacktraceLock::print::hb2a626a81e06b2dc
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:42:9
[INFO] [stdout]    9:     0x60170d8c4ad9 - std::panicking::default_hook::{{closure}}::h4f78485264f12d10
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:300:27
[INFO] [stdout]   10:     0x60170d8c490e - std::panicking::default_hook::h2c66fc99e962531d
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:324:9
[INFO] [stdout]   11:     0x60170d88ce44 - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hb6bd65493727d71a
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/alloc/src/boxed.rs:1985:9
[INFO] [stdout]   12:     0x60170d88ce44 - test::test_main_with_exit_callback::{{closure}}::h60217ec76a0ece4a
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x60170d8c54ae - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h318e4efb8c1a5689
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/alloc/src/boxed.rs:1985:9
[INFO] [stdout]   14:     0x60170d8c54ae - std::panicking::rust_panic_with_hook::h33ac55f64bbd807d
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:841:13
[INFO] [stdout]   15:     0x60170d8c527a - std::panicking::begin_panic_handler::{{closure}}::h30e7cb89678a57fe
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:706:13
[INFO] [stdout]   16:     0x60170d8c3a59 - std::sys::backtrace::__rust_end_short_backtrace::hed60f27456c16ced
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:174:18
[INFO] [stdout]   17:     0x60170d8c4f0d - __rustc[de2ca18b4c54d5b8]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:697:5
[INFO] [stdout]   18:     0x60170d8e84b0 - core::panicking::panic_fmt::h62f63d096dd276af
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panicking.rs:75:14
[INFO] [stdout]   19:     0x60170d8e87d3 - core::panicking::assert_failed_inner::h102b4539a88470c2
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panicking.rs:448:17
[INFO] [stdout]   20:     0x60170d83feef - core::panicking::assert_failed::h21d38d899759c112
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panicking.rs:403:5
[INFO] [stdout]   21:     0x60170d845ee6 - hmm_tblout::tests::in_same_as_out_n::h3600d8cebd773e7f
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:353:9
[INFO] [stdout]   22:     0x60170d845567 - hmm_tblout::tests::in_same_as_out_n::{{closure}}::h9068045e5a1de91a
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:335:26
[INFO] [stdout]   23:     0x60170d83e3f6 - core::ops::function::FnOnce::call_once::hb2547a07f137cf30
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:253:5
[INFO] [stdout]   24:     0x60170d8926ab - core::ops::function::FnOnce::call_once::h1f9474f1347fff52
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:253:5
[INFO] [stdout]   25:     0x60170d8926ab - test::__rust_begin_short_backtrace::ha52ab26e77157f03
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:648:18
[INFO] [stdout]   26:     0x60170d8917e5 - test::run_test_in_process::{{closure}}::h229c1a11a50b261f
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:671:74
[INFO] [stdout]   27:     0x60170d8917e5 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h78821afbf97b39a9
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   28:     0x60170d8917e5 - std::panicking::catch_unwind::do_call::h53abf3ed5bd32ba3
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:589:40
[INFO] [stdout]   29:     0x60170d8917e5 - std::panicking::catch_unwind::h6deb5fe1e91873c9
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:552:19
[INFO] [stdout]   30:     0x60170d8917e5 - std::panic::catch_unwind::hea0829b6b565654b
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panic.rs:359:14
[INFO] [stdout]   31:     0x60170d8917e5 - test::run_test_in_process::hdc44dfecea3db21b
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:671:27
[INFO] [stdout]   32:     0x60170d8917e5 - test::run_test::{{closure}}::h0364ba59bf23f652
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:592:43
[INFO] [stdout]   33:     0x60170d8553e4 - test::run_test::{{closure}}::h32730b304eec05da
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:622:41
[INFO] [stdout]   34:     0x60170d8553e4 - std::sys::backtrace::__rust_begin_short_backtrace::h177cb952fc54ad2c
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:158:18
[INFO] [stdout]   35:     0x60170d858dba - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h119d903520007597
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/thread/mod.rs:559:17
[INFO] [stdout]   36:     0x60170d858dba - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hab88401d606702a6
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   37:     0x60170d858dba - std::panicking::catch_unwind::do_call::h163fe12cca9901c2
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:589:40
[INFO] [stdout]   38:     0x60170d858dba - std::panicking::catch_unwind::he81557d0e17cc1bc
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:552:19
[INFO] [stdout]   39:     0x60170d858dba - std::panic::catch_unwind::hc2b8e79c20593955
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panic.rs:359:14
[INFO] [stdout]   40:     0x60170d858dba - std::thread::Builder::spawn_unchecked_::{{closure}}::hfa6b4978e07815cc
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/thread/mod.rs:557:30
[INFO] [stdout]   41:     0x60170d858dba - core::ops::function::FnOnce::call_once{{vtable.shim}}::hddcd7484a13fd793
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:253:5
[INFO] [stdout]   42:     0x60170d8c842f - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h5924238c754de3b8
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/alloc/src/boxed.rs:1971:9
[INFO] [stdout]   43:     0x60170d8c842f - std::sys::pal::unix::thread::Thread::new::thread_start::hb6e99e73da4d28f8
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/pal/unix/thread.rs:107:17
[INFO] [stdout]   44:     0x7eb561b1faa4 - <unknown>
[INFO] [stdout]   45:     0x7eb561baca34 - clone
[INFO] [stdout]   46:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] ---- tests::test_phmmer_write stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'tests::test_phmmer_write' panicked at src/lib.rs:300:9:
[INFO] [stdout] assertion `left == right` failed
[INFO] [stdout]   left: "HBB_HUMAN            -          MYG_ESCGI            -            2.3e-11   30.3   0.1   2.5e-11   30.2   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\n"
[INFO] [stdout]  right: "HBB_HUMAN       -          MYG_ESCGI       -            2.30e-11  30.30  0.10   2.50e-11  30.20  0.10  1.00   1   0   0   1   1   1   1 Human beta hemoglobin.\n"
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x60170d8c3562 - std::backtrace_rs::backtrace::libunwind::trace::h2d45396358f41939
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x60170d8c3562 - std::backtrace_rs::backtrace::trace_unsynchronized::hffcefc0b67f1d6e2
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x60170d8c3562 - std::sys::backtrace::_print_fmt::hd72f71d23b436b92
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:66:9
[INFO] [stdout]    3:     0x60170d8c3562 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::hdcfcb6d4c8489523
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:39:26
[INFO] [stdout]    4:     0x60170d8ea893 - core::fmt::rt::Argument::fmt::h2c56b3114963061a
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/fmt/rt.rs:173:76
[INFO] [stdout]    5:     0x60170d8ea893 - core::fmt::write::h8a494366950f23bb
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/fmt/mod.rs:1468:25
[INFO] [stdout]    6:     0x60170d8c04d3 - std::io::default_write_fmt::h7b8824096454f323
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x60170d8c04d3 - std::io::Write::write_fmt::h4e71294925c334d0
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/io/mod.rs:1954:13
[INFO] [stdout]    8:     0x60170d8c33b2 - std::sys::backtrace::BacktraceLock::print::hb2a626a81e06b2dc
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:42:9
[INFO] [stdout]    9:     0x60170d8c4ad9 - std::panicking::default_hook::{{closure}}::h4f78485264f12d10
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:300:27
[INFO] [stdout]   10:     0x60170d8c490e - std::panicking::default_hook::h2c66fc99e962531d
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:324:9
[INFO] [stdout]   11:     0x60170d88ce44 - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hb6bd65493727d71a
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/alloc/src/boxed.rs:1985:9
[INFO] [stdout]   12:     0x60170d88ce44 - test::test_main_with_exit_callback::{{closure}}::h60217ec76a0ece4a
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x60170d8c54ae - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h318e4efb8c1a5689
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/alloc/src/boxed.rs:1985:9
[INFO] [stdout]   14:     0x60170d8c54ae - std::panicking::rust_panic_with_hook::h33ac55f64bbd807d
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:841:13
[INFO] [stdout]   15:     0x60170d8c527a - std::panicking::begin_panic_handler::{{closure}}::h30e7cb89678a57fe
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:706:13
[INFO] [stdout]   16:     0x60170d8c3a59 - std::sys::backtrace::__rust_end_short_backtrace::hed60f27456c16ced
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:174:18
[INFO] [stdout]   17:     0x60170d8c4f0d - __rustc[de2ca18b4c54d5b8]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:697:5
[INFO] [stdout]   18:     0x60170d8e84b0 - core::panicking::panic_fmt::h62f63d096dd276af
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panicking.rs:75:14
[INFO] [stdout]   19:     0x60170d8e87d3 - core::panicking::assert_failed_inner::h102b4539a88470c2
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panicking.rs:448:17
[INFO] [stdout]   20:     0x60170d83feef - core::panicking::assert_failed::h21d38d899759c112
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panicking.rs:403:5
[INFO] [stdout]   21:     0x60170d844940 - hmm_tblout::tests::test_phmmer_write::h46ad9e4d373f880d
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:300:9
[INFO] [stdout]   22:     0x60170d844197 - hmm_tblout::tests::test_phmmer_write::{{closure}}::ha7b7ec8b89bec1d4
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:285:27
[INFO] [stdout]   23:     0x60170d83e246 - core::ops::function::FnOnce::call_once::h12dcae4f7da9f6d0
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:253:5
[INFO] [stdout]   24:     0x60170d8926ab - core::ops::function::FnOnce::call_once::h1f9474f1347fff52
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:253:5
[INFO] [stdout]   25:     0x60170d8926ab - test::__rust_begin_short_backtrace::ha52ab26e77157f03
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:648:18
[INFO] [stdout]   26:     0x60170d8917e5 - test::run_test_in_process::{{closure}}::h229c1a11a50b261f
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:671:74
[INFO] [stdout]   27:     0x60170d8917e5 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h78821afbf97b39a9
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   28:     0x60170d8917e5 - std::panicking::catch_unwind::do_call::h53abf3ed5bd32ba3
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:589:40
[INFO] [stdout]   29:     0x60170d8917e5 - std::panicking::catch_unwind::h6deb5fe1e91873c9
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:552:19
[INFO] [stdout]   30:     0x60170d8917e5 - std::panic::catch_unwind::hea0829b6b565654b
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panic.rs:359:14
[INFO] [stdout]   31:     0x60170d8917e5 - test::run_test_in_process::hdc44dfecea3db21b
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:671:27
[INFO] [stdout]   32:     0x60170d8917e5 - test::run_test::{{closure}}::h0364ba59bf23f652
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:592:43
[INFO] [stdout]   33:     0x60170d8553e4 - test::run_test::{{closure}}::h32730b304eec05da
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:622:41
[INFO] [stdout]   34:     0x60170d8553e4 - std::sys::backtrace::__rust_begin_short_backtrace::h177cb952fc54ad2c
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:158:18
[INFO] [stdout]   35:     0x60170d858dba - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h119d903520007597
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/thread/mod.rs:559:17
[INFO] [stdout]   36:     0x60170d858dba - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hab88401d606702a6
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   37:     0x60170d858dba - std::panicking::catch_unwind::do_call::h163fe12cca9901c2
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:589:40
[INFO] [stdout]   38:     0x60170d858dba - std::panicking::catch_unwind::he81557d0e17cc1bc
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:552:19
[INFO] [stdout]   39:     0x60170d858dba - std::panic::catch_unwind::hc2b8e79c20593955
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panic.rs:359:14
[INFO] [stdout]   40:     0x60170d858dba - std::thread::Builder::spawn_unchecked_::{{closure}}::hfa6b4978e07815cc
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/thread/mod.rs:557:30
[INFO] [stdout]   41:     0x60170d858dba - core::ops::function::FnOnce::call_once{{vtable.shim}}::hddcd7484a13fd793
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:253:5
[INFO] [stdout]   42:     0x60170d8c842f - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h5924238c754de3b8
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/alloc/src/boxed.rs:1971:9
[INFO] [stdout]   43:     0x60170d8c842f - std::sys::pal::unix::thread::Thread::new::thread_start::hb6e99e73da4d28f8
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/pal/unix/thread.rs:107:17
[INFO] [stdout]   44:     0x7eb561b1faa4 - <unknown>
[INFO] [stdout]   45:     0x7eb561baca34 - clone
[INFO] [stdout]   46:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] ---- tests::in_same_as_out stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'tests::in_same_as_out' panicked at src/lib.rs:327:9:
[INFO] [stdout] assertion `left == right` failed
[INFO] [stdout]   left: "#                                                               --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----\n# target name        accession  query name           accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target\n#------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------\nHBB_HUMAN            -          MYG_ESCGI            -            2.3e-11   30.3   0.1   2.5e-11   30.2   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          MYG_HORSE            -            5.1e-12   32.3   0.1   6.1e-12   32.1   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          MYG_PROGU            -            9.3e-13   34.6     0   1.1e-12   34.4     0   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          MYG_SAISC            -            7.4e-13   35.1     0     8e-13     35     0   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB_LARRI            -                0e0  222.2   0.1       0e0    222   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB1_VAREX           -                0e0  210.6   0.2       0e0  210.5   0.2   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB2_XENTR           -                0e0  163.9   0.1       0e0  163.7   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBBL_RANCA           -                0e0    180   0.1       0e0  179.9   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB2_TRICR           -                0e0    143     0       0e0  142.8     0   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\n#\n# Program:         phmmer\n# Version:         3.2 (June 2018)\n# Pipeline mode:   SEARCH\n# Query file:      /var/lib/cwl/stgc72dd3bc-8891-4b83-83e7-215178692be8/globins45.fa\n# Target file:     /var/lib/cwl/stgf46f4fb0-f7ec-4fbf-b608-74ca6d8a20a0/HBB_HUMAN\n# Options:         phmmer -o globins45.fa.phmmer_matches.out --tblout globins45.fa.phmmer_matches.tblout /var/lib/cwl/stgc72dd3bc-8891-4b83-83e7-215178692be8/globins45.fa /var/lib/cwl/stgf46f4fb0-f7ec-4fbf-b608-74ca6d8a20a0/HBB_HUMAN\n# Current dir:     /tmp/cwl\n# Date:            Tue Jul 17 13:01:19 2018\n# [ok]"
[INFO] [stdout]  right: "#                                                               --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----\n# target name        accession  query name           accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target\n#------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------\nHBB_HUMAN            -          MYG_ESCGI            -            2.3e-11   30.3   0.1   2.5e-11   30.2   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          MYG_HORSE            -            5.1e-12   32.3   0.1   6.1e-12   32.1   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          MYG_PROGU            -            9.3e-13   34.6   0.0   1.1e-12   34.4   0.0   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          MYG_SAISC            -            7.4e-13   35.1   0.0     8e-13   35.0   0.0   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB_LARRI            -            1.5e-70  222.2   0.1   1.6e-70  222.0   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB1_VAREX           -              7e-67  210.6   0.2   7.7e-67  210.5   0.2   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB2_XENTR           -            1.2e-52  163.9   0.1   1.4e-52  163.7   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBBL_RANCA           -            1.5e-57  180.0   0.1   1.7e-57  179.9   0.1   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\nHBB_HUMAN            -          HBB2_TRICR           -            3.4e-46  143.0   0.0   3.7e-46  142.8   0.0   1.0   1   0   0   1   1   1   1 Human beta hemoglobin.\n#\n# Program:         phmmer\n# Version:         3.2 (June 2018)\n# Pipeline mode:   SEARCH\n# Query file:      /var/lib/cwl/stgc72dd3bc-8891-4b83-83e7-215178692be8/globins45.fa\n# Target file:     /var/lib/cwl/stgf46f4fb0-f7ec-4fbf-b608-74ca6d8a20a0/HBB_HUMAN\n# Option settings: phmmer -o globins45.fa.phmmer_matches.out --tblout globins45.fa.phmmer_matches.tblout /var/lib/cwl/stgc72dd3bc-8891-4b83-83e7-215178692be8/globins45.fa /var/lib/cwl/stgf46f4fb0-f7ec-4fbf-b608-74ca6d8a20a0/HBB_HUMAN \n# Current dir:     /tmp/cwl\n# Date:            Tue Jul 17 13:01:19 2018\n# [ok]"
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x60170d8c3562 - std::backtrace_rs::backtrace::libunwind::trace::h2d45396358f41939
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x60170d8c3562 - std::backtrace_rs::backtrace::trace_unsynchronized::hffcefc0b67f1d6e2
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x60170d8c3562 - std::sys::backtrace::_print_fmt::hd72f71d23b436b92
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:66:9
[INFO] [stdout]    3:     0x60170d8c3562 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::hdcfcb6d4c8489523
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:39:26
[INFO] [stdout]    4:     0x60170d8ea893 - core::fmt::rt::Argument::fmt::h2c56b3114963061a
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/fmt/rt.rs:173:76
[INFO] [stdout]    5:     0x60170d8ea893 - core::fmt::write::h8a494366950f23bb
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/fmt/mod.rs:1468:25
[INFO] [stdout]    6:     0x60170d8c04d3 - std::io::default_write_fmt::h7b8824096454f323
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x60170d8c04d3 - std::io::Write::write_fmt::h4e71294925c334d0
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/io/mod.rs:1954:13
[INFO] [stdout]    8:     0x60170d8c33b2 - std::sys::backtrace::BacktraceLock::print::hb2a626a81e06b2dc
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:42:9
[INFO] [stdout]    9:     0x60170d8c4ad9 - std::panicking::default_hook::{{closure}}::h4f78485264f12d10
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:300:27
[INFO] [stdout]   10:     0x60170d8c490e - std::panicking::default_hook::h2c66fc99e962531d
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:324:9
[INFO] [stdout]   11:     0x60170d88ce44 - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::hb6bd65493727d71a
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/alloc/src/boxed.rs:1985:9
[INFO] [stdout]   12:     0x60170d88ce44 - test::test_main_with_exit_callback::{{closure}}::h60217ec76a0ece4a
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x60170d8c54ae - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h318e4efb8c1a5689
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/alloc/src/boxed.rs:1985:9
[INFO] [stdout]   14:     0x60170d8c54ae - std::panicking::rust_panic_with_hook::h33ac55f64bbd807d
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:841:13
[INFO] [stdout]   15:     0x60170d8c527a - std::panicking::begin_panic_handler::{{closure}}::h30e7cb89678a57fe
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:706:13
[INFO] [stdout]   16:     0x60170d8c3a59 - std::sys::backtrace::__rust_end_short_backtrace::hed60f27456c16ced
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:174:18
[INFO] [stdout]   17:     0x60170d8c4f0d - __rustc[de2ca18b4c54d5b8]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:697:5
[INFO] [stdout]   18:     0x60170d8e84b0 - core::panicking::panic_fmt::h62f63d096dd276af
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panicking.rs:75:14
[INFO] [stdout]   19:     0x60170d8e87d3 - core::panicking::assert_failed_inner::h102b4539a88470c2
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panicking.rs:448:17
[INFO] [stdout]   20:     0x60170d83feef - core::panicking::assert_failed::h21d38d899759c112
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panicking.rs:403:5
[INFO] [stdout]   21:     0x60170d845395 - hmm_tblout::tests::in_same_as_out::h5a1d2b62aa289898
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:327:9
[INFO] [stdout]   22:     0x60170d8449c7 - hmm_tblout::tests::in_same_as_out::{{closure}}::h98016a079a3cda51
[INFO] [stdout]                                at /opt/rustwide/workdir/src/lib.rs:309:24
[INFO] [stdout]   23:     0x60170d83e506 - core::ops::function::FnOnce::call_once::he6383759badce609
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:253:5
[INFO] [stdout]   24:     0x60170d8926ab - core::ops::function::FnOnce::call_once::h1f9474f1347fff52
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:253:5
[INFO] [stdout]   25:     0x60170d8926ab - test::__rust_begin_short_backtrace::ha52ab26e77157f03
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:648:18
[INFO] [stdout]   26:     0x60170d8917e5 - test::run_test_in_process::{{closure}}::h229c1a11a50b261f
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:671:74
[INFO] [stdout]   27:     0x60170d8917e5 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h78821afbf97b39a9
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   28:     0x60170d8917e5 - std::panicking::catch_unwind::do_call::h53abf3ed5bd32ba3
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:589:40
[INFO] [stdout]   29:     0x60170d8917e5 - std::panicking::catch_unwind::h6deb5fe1e91873c9
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:552:19
[INFO] [stdout]   30:     0x60170d8917e5 - std::panic::catch_unwind::hea0829b6b565654b
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panic.rs:359:14
[INFO] [stdout]   31:     0x60170d8917e5 - test::run_test_in_process::hdc44dfecea3db21b
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:671:27
[INFO] [stdout]   32:     0x60170d8917e5 - test::run_test::{{closure}}::h0364ba59bf23f652
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:592:43
[INFO] [stdout]   33:     0x60170d8553e4 - test::run_test::{{closure}}::h32730b304eec05da
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/test/src/lib.rs:622:41
[INFO] [stdout]   34:     0x60170d8553e4 - std::sys::backtrace::__rust_begin_short_backtrace::h177cb952fc54ad2c
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/backtrace.rs:158:18
[INFO] [stdout]   35:     0x60170d858dba - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h119d903520007597
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/thread/mod.rs:559:17
[INFO] [stdout]   36:     0x60170d858dba - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hab88401d606702a6
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   37:     0x60170d858dba - std::panicking::catch_unwind::do_call::h163fe12cca9901c2
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:589:40
[INFO] [stdout]   38:     0x60170d858dba - std::panicking::catch_unwind::he81557d0e17cc1bc
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panicking.rs:552:19
[INFO] [stdout]   39:     0x60170d858dba - std::panic::catch_unwind::hc2b8e79c20593955
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/panic.rs:359:14
[INFO] [stdout]   40:     0x60170d858dba - std::thread::Builder::spawn_unchecked_::{{closure}}::hfa6b4978e07815cc
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/thread/mod.rs:557:30
[INFO] [stdout]   41:     0x60170d858dba - core::ops::function::FnOnce::call_once{{vtable.shim}}::hddcd7484a13fd793
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/core/src/ops/function.rs:253:5
[INFO] [stdout]   42:     0x60170d8c842f - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h5924238c754de3b8
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/alloc/src/boxed.rs:1971:9
[INFO] [stdout]   43:     0x60170d8c842f - std::sys::pal::unix::thread::Thread::new::thread_start::hb6e99e73da4d28f8
[INFO] [stdout]                                at /rustc/1159e78c4747b02ef996e55082b704c09b970588/library/std/src/sys/pal/unix/thread.rs:107:17
[INFO] [stdout]   44:     0x7eb561b1faa4 - <unknown>
[INFO] [stdout]   45:     0x7eb561baca34 - clone
[INFO] [stdout]   46:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     tests::in_same_as_out
[INFO] [stdout]     tests::in_same_as_out_n
[INFO] [stdout]     tests::test_phmmer_write
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 7 passed; 3 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] running `Command { std: "docker" "inspect" "26aacb2993c1c8fb649f9d0b9a2b4105f78d2b8cd4fb8b315c5ee5b6cfa003cd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "26aacb2993c1c8fb649f9d0b9a2b4105f78d2b8cd4fb8b315c5ee5b6cfa003cd", kill_on_drop: false }`
[INFO] [stdout] 26aacb2993c1c8fb649f9d0b9a2b4105f78d2b8cd4fb8b315c5ee5b6cfa003cd
