[INFO] cloning repository https://github.com/stela2502/bam_tide
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/bam_tide" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] e64ac02708b743ad37ae0bcea3a25bb9bcc35fec
[INFO] testing stela2502/bam_tide against beta-2025-09-21 for beta-1.91-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/stela2502/bam_tide
[INFO] finished tweaking git repo https://github.com/stela2502/bam_tide
[INFO] tweaked toml for git repo https://github.com/stela2502/bam_tide written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/stela2502/bam_tide on toolchain beta-2025-09-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/stela2502/bam_tide already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f92166f2802fd06a87614f8345c137b84dd3771d792b313e634e7c1320fecf48
[INFO] running `Command { std: "docker" "start" "-a" "f92166f2802fd06a87614f8345c137b84dd3771d792b313e634e7c1320fecf48", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f92166f2802fd06a87614f8345c137b84dd3771d792b313e634e7c1320fecf48", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f92166f2802fd06a87614f8345c137b84dd3771d792b313e634e7c1320fecf48", kill_on_drop: false }`
[INFO] [stdout] f92166f2802fd06a87614f8345c137b84dd3771d792b313e634e7c1320fecf48
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7f6f0474ba406faab077ffb1ecdf1fc034e359bcbdb2e5d18c3a546473d2c927
[INFO] running `Command { std: "docker" "start" "-a" "7f6f0474ba406faab077ffb1ecdf1fc034e359bcbdb2e5d18c3a546473d2c927", kill_on_drop: false }`
[INFO] [stderr]    Compiling glob v0.3.2
[INFO] [stderr]    Compiling smallvec v1.15.1
[INFO] [stderr]    Compiling memchr v2.7.5
[INFO] [stderr]    Compiling libloading v0.8.8
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling cc v1.2.29
[INFO] [stderr]    Compiling regex v1.11.2
[INFO] [stderr]    Compiling percent-encoding v2.3.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling bitflags v2.9.1
[INFO] [stderr]    Compiling rustversion v1.0.21
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling icu_normalizer v2.0.0
[INFO] [stderr]    Compiling rustix v1.0.7
[INFO] [stderr]    Compiling futures-util v0.3.31
[INFO] [stderr]    Compiling form_urlencoded v1.2.1
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling arrayvec v0.7.6
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling clap_builder v4.5.40
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling chrono v0.4.41
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling idna v1.0.3
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[INFO] [stderr]    Compiling rustls-native-certs v0.6.3
[INFO] [stderr]    Compiling serde v1.0.219
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[INFO] [stderr]    Compiling openssl-src v300.5.1+3.5.1
[INFO] [stderr]    Compiling cmake v0.1.54
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[INFO] [stderr]    Compiling indicatif v0.18.0
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[INFO] [stderr]    Compiling libz-sys v1.1.22
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.82+curl-8.14.1
[INFO] [stderr]    Compiling libdeflate-sys v0.13.0
[INFO] [stderr]    Compiling openssl v0.10.73
[INFO] [stderr]    Compiling ufmt-write v0.1.0
[INFO] [stderr]    Compiling dirs-sys v0.4.1
[INFO] [stderr]    Compiling tempfile v3.22.0
[INFO] [stderr]    Compiling futures-executor v0.3.31
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling mapping_info v0.1.0 (https://github.com/stela2502/mapping_info#d5d2185e)
[INFO] [stderr]    Compiling flate2 v1.1.2
[INFO] [stderr]    Compiling tokio v1.46.1
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling futures v0.3.31
[INFO] [stderr]    Compiling byteordered v0.6.0
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling int_to_str v0.1.0 (https://github.com/stela2502/int_to_str#c961fc73)
[INFO] [stderr]    Compiling index_list v0.2.16
[INFO] [stderr]    Compiling clap v4.5.40
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling scdata v0.1.0 (https://github.com/stela2502/scdata#85431205)
[INFO] [stderr]    Compiling directories v5.0.1
[INFO] [stderr]    Compiling cigar v0.1.0 (https://github.com/stela2502/cigar.git#5d434d47)
[INFO] [stderr]    Compiling ufmt-macros v0.3.0
[INFO] [stderr]    Compiling rustls v0.21.12
[INFO] [stderr]    Compiling ufmt v0.2.0
[INFO] [stderr]    Compiling libdeflater v0.13.0
[INFO] [stderr]    Compiling sct v0.7.1
[INFO] [stderr]    Compiling rustls-webpki v0.101.7
[INFO] [stderr]    Compiling webpki v0.22.4
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling attohttpc v0.25.0
[INFO] [stderr]    Compiling bigtools v0.5.6
[INFO] [stderr]    Compiling rust-htslib v0.49.0
[INFO] [stderr]    Compiling bam_tide v0.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `scdata::scdata::MatrixValueType`
[INFO] [stdout]   --> src/mutation_processor.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use scdata::scdata::MatrixValueType;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `min_mapping_quality`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:259:73
[INFO] [stdout]     |
[INFO] [stdout] 259 |         cell_tag: &[u8;2], umi_tag: &[u8;2], add_introns:bool, only_r1: bool, min_mapping_quality:u8 ) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_mapping_quality`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 09s
[INFO] running `Command { std: "docker" "inspect" "7f6f0474ba406faab077ffb1ecdf1fc034e359bcbdb2e5d18c3a546473d2c927", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7f6f0474ba406faab077ffb1ecdf1fc034e359bcbdb2e5d18c3a546473d2c927", kill_on_drop: false }`
[INFO] [stdout] 7f6f0474ba406faab077ffb1ecdf1fc034e359bcbdb2e5d18c3a546473d2c927
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e5ba45e530aeaf2d226f0a117ca45710472d2b5b5c2f2c38bd3595e508acbb0e
[INFO] running `Command { std: "docker" "start" "-a" "e5ba45e530aeaf2d226f0a117ca45710472d2b5b5c2f2c38bd3595e508acbb0e", kill_on_drop: false }`
[INFO] [stdout] warning: unused import: `scdata::scdata::MatrixValueType`
[INFO] [stdout]   --> src/mutation_processor.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use scdata::scdata::MatrixValueType;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `min_mapping_quality`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:259:73
[INFO] [stdout]     |
[INFO] [stdout] 259 |         cell_tag: &[u8;2], umi_tag: &[u8;2], add_introns:bool, only_r1: bool, min_mapping_quality:u8 ) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_mapping_quality`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling bam_tide v0.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::process::exit`
[INFO] [stdout]  --> tests/test-bam2mut_hist.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::process::exit;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:637:9
[INFO] [stdout]     |
[INFO] [stdout] 637 |     use std::collections::HashMap;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::path::Path`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:804:9
[INFO] [stdout]     |
[INFO] [stdout] 804 |     use std::path::Path;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `min_mapping_quality`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:259:73
[INFO] [stdout]     |
[INFO] [stdout] 259 |         cell_tag: &[u8;2], umi_tag: &[u8;2], add_introns:bool, only_r1: bool, min_mapping_quality:u8 ) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_mapping_quality`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 7.63s
[INFO] running `Command { std: "docker" "inspect" "e5ba45e530aeaf2d226f0a117ca45710472d2b5b5c2f2c38bd3595e508acbb0e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e5ba45e530aeaf2d226f0a117ca45710472d2b5b5c2f2c38bd3595e508acbb0e", kill_on_drop: false }`
[INFO] [stdout] e5ba45e530aeaf2d226f0a117ca45710472d2b5b5c2f2c38bd3595e508acbb0e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 28a70da87319562157c9545ff13ac135ecdb357a21fd5016143593a5429235a8
[INFO] running `Command { std: "docker" "start" "-a" "28a70da87319562157c9545ff13ac135ecdb357a21fd5016143593a5429235a8", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `scdata::scdata::MatrixValueType`
[INFO] [stderr]   --> src/mutation_processor.rs:18:5
[INFO] [stderr]    |
[INFO] [stderr] 18 | use scdata::scdata::MatrixValueType;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `min_mapping_quality`
[INFO] [stderr]    --> src/bed_data/bed_data.rs:259:73
[INFO] [stderr]     |
[INFO] [stderr] 259 |         cell_tag: &[u8;2], umi_tag: &[u8;2], add_introns:bool, only_r1: bool, min_mapping_quality:u8 ) {
[INFO] [stderr]     |                                                                               ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_mapping_quality`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `bam_tide` (lib) generated 2 warnings (run `cargo fix --lib -p bam_tide` to apply 1 suggestion)
[INFO] [stderr] warning: unused import: `std::process::exit`
[INFO] [stderr]  --> tests/test-bam2mut_hist.rs:2:5
[INFO] [stderr]   |
[INFO] [stderr] 2 | use std::process::exit;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `bam_tide` (test "test-bam2mut_hist") generated 1 warning (run `cargo fix --test "test-bam2mut_hist"` to apply 1 suggestion)
[INFO] [stderr] warning: unused import: `std::collections::HashMap`
[INFO] [stderr]    --> src/bed_data/bed_data.rs:637:9
[INFO] [stderr]     |
[INFO] [stderr] 637 |     use std::collections::HashMap;
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::path::Path`
[INFO] [stderr]    --> src/bed_data/bed_data.rs:804:9
[INFO] [stderr]     |
[INFO] [stderr] 804 |     use std::path::Path;
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `bam_tide` (lib test) generated 3 warnings (1 duplicate) (run `cargo fix --lib -p bam_tide --tests` to apply 2 suggestions)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.39s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/bam_tide-33cc7c908ebee4b7)
[INFO] [stdout] running 8 tests
[INFO] [stdout] test bed_data::bed_data::tests::test_genome_info_to_search_and_id_for_chr_start ... ok
[INFO] [stdout] test bed_data::bed_data::tests::test_current_chr_for_id ... ok
[INFO] [stdout] test bed_data::bed_data::tests::test_display ... ok
[INFO] [stdout] test bed_data::bed_data::tests::test_value_flat ... ok
[INFO] [stdout] test mutation_processor::tests::test_mutation_processor_new ... ok
[INFO] [stdout] test bed_data::bed_data::tests::test_normalize_not_and_cpm_and_bpm_and_rpkm ... ok
[INFO] [stdout] test bed_data::bed_data::tests::test_write_bigwig_creates_file ... ok
[INFO] [stdout] test mutation_processor::tests::test_handle_mutations ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- mutation_processor::tests::test_handle_mutations stdout ----
[INFO] [stdout] Error?: Os {
[INFO] [stdout]     code: 30,
[INFO] [stdout]     kind: ReadOnlyFilesystem,
[INFO] [stdout]     message: "Read-only file system",
[INFO] [stdout] }
[INFO] [stdout] 
[INFO] [stdout] thread 'mutation_processor::tests::test_handle_mutations' (31) panicked at src/mutation_processor.rs:456:56:
[INFO] [stdout] Failed to write sparse matrix: "Error creating the path?: Os {\n    code: 2,\n    kind: NotFound,\n    message: \"No such file or directory\",\n}"
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x628589db73b2 - std::backtrace_rs::backtrace::libunwind::trace::hcab59e1e990fdc24
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x628589db73b2 - std::backtrace_rs::backtrace::trace_unsynchronized::he24cc57f3d2f47b7
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x628589db73b2 - std::sys::backtrace::_print_fmt::hf8d65ede198eeb54
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/sys/backtrace.rs:66:9
[INFO] [stdout]    3:     0x628589db73b2 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h67edf0e4d33c343c
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/sys/backtrace.rs:39:26
[INFO] [stdout]    4:     0x628589dc8dcf - core::fmt::rt::Argument::fmt::hef94184842aeafdd
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/fmt/rt.rs:173:76
[INFO] [stdout]    5:     0x628589dc8dcf - core::fmt::write::hcf0c66b48a8fa606
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/fmt/mod.rs:1468:25
[INFO] [stdout]    6:     0x628589d829e1 - std::io::default_write_fmt::h69967ac0ba93195f
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x628589d829e1 - std::io::Write::write_fmt::h8db9396209deaa1c
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/io/mod.rs:1954:13
[INFO] [stdout]    8:     0x628589d8fcb2 - std::sys::backtrace::BacktraceLock::print::h07e5435aa717b414
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/sys/backtrace.rs:42:9
[INFO] [stdout]    9:     0x628589d94eaf - std::panicking::default_hook::{{closure}}::h91001850288db5f7
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:301:27
[INFO] [stdout]   10:     0x628589d94d41 - std::panicking::default_hook::h2346dbb704ef5512
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:325:9
[INFO] [stdout]   11:     0x6285893dc75e - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h18383b2e29377420
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/alloc/src/boxed.rs:1999:9
[INFO] [stdout]   12:     0x6285893dc75e - test::test_main_with_exit_callback::{{closure}}::h272d7ef99aef06dc
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x628589d9561f - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h6dba6e441651a0d1
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/alloc/src/boxed.rs:1999:9
[INFO] [stdout]   14:     0x628589d9561f - std::panicking::panic_with_hook::hd2b063a6090d23a4
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:842:13
[INFO] [stdout]   15:     0x628589d953ca - std::panicking::panic_handler::{{closure}}::he666d95f139a333e
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:707:13
[INFO] [stdout]   16:     0x628589d8fde9 - std::sys::backtrace::__rust_end_short_backtrace::h631ad224854ebee5
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/sys/backtrace.rs:174:18
[INFO] [stdout]   17:     0x628589d7691d - __rustc[1d67440d6e82e4f]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:698:5
[INFO] [stdout]   18:     0x628589dd1920 - core::panicking::panic_fmt::h420ddb7fd73daf53
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/panicking.rs:75:14
[INFO] [stdout]   19:     0x628589dd0c46 - core::result::unwrap_failed::hdde076be853d034f
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/result.rs:1855:5
[INFO] [stdout]   20:     0x62858938e12e - core::result::Result<T,E>::expect::h0ab52d667a332202
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/result.rs:1178:23
[INFO] [stdout]   21:     0x6285893b5f9b - bam_tide::mutation_processor::tests::test_handle_mutations::h249fb7237a014a5b
[INFO] [stdout]                                at /opt/rustwide/workdir/src/mutation_processor.rs:456:56
[INFO] [stdout]   22:     0x6285893b68f7 - bam_tide::mutation_processor::tests::test_handle_mutations::{{closure}}::hf41642d354e800a5
[INFO] [stdout]                                at /opt/rustwide/workdir/src/mutation_processor.rs:376:31
[INFO] [stdout]   23:     0x6285893b2b86 - core::ops::function::FnOnce::call_once::h390f8eaea0513a67
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   24:     0x6285893dc51b - core::ops::function::FnOnce::call_once::h70887edf07a630ba
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   25:     0x6285893dc51b - test::__rust_begin_short_backtrace::h27763c4cbbdb8601
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/test/src/lib.rs:663:18
[INFO] [stdout]   26:     0x6285893f2185 - test::run_test_in_process::{{closure}}::h4dc8bc6d5e3924d3
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/test/src/lib.rs:686:74
[INFO] [stdout]   27:     0x6285893f2185 - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h75905e8ffe81974f
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   28:     0x6285893f2185 - std::panicking::catch_unwind::do_call::h0bc60366ba66eba5
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:590:40
[INFO] [stdout]   29:     0x6285893f2185 - std::panicking::catch_unwind::hae1ec7bf94407afa
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:553:19
[INFO] [stdout]   30:     0x6285893f2185 - std::panic::catch_unwind::h0f4ff4773d84d3cd
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panic.rs:359:14
[INFO] [stdout]   31:     0x6285893f2185 - test::run_test_in_process::h03fbc77ae48b3f10
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/test/src/lib.rs:686:27
[INFO] [stdout]   32:     0x6285893f2185 - test::run_test::{{closure}}::h83476a9c453dc4d3
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/test/src/lib.rs:607:43
[INFO] [stdout]   33:     0x6285893c8974 - test::run_test::{{closure}}::h515482ad1e7fe7de
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/test/src/lib.rs:637:41
[INFO] [stdout]   34:     0x6285893c8974 - std::sys::backtrace::__rust_begin_short_backtrace::hed09f6ac5fe9d647
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/sys/backtrace.rs:158:18
[INFO] [stdout]   35:     0x6285893cc23a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h988e2cd969319888
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/thread/mod.rs:559:17
[INFO] [stdout]   36:     0x6285893cc23a - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::hd70e28dc46ec20be
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   37:     0x6285893cc23a - std::panicking::catch_unwind::do_call::hdc29e11311eb7655
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:590:40
[INFO] [stdout]   38:     0x6285893cc23a - std::panicking::catch_unwind::h9e402d6a96fef41c
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panicking.rs:553:19
[INFO] [stdout]   39:     0x6285893cc23a - std::panic::catch_unwind::h9213c0c54aec70e0
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/panic.rs:359:14
[INFO] [stdout]   40:     0x6285893cc23a - std::thread::Builder::spawn_unchecked_::{{closure}}::h6262965869ed2b87
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/thread/mod.rs:557:30
[INFO] [stdout]   41:     0x6285893cc23a - core::ops::function::FnOnce::call_once{{vtable.shim}}::h05c05ed02619e462
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   42:     0x628589d8af4f - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h2044e71c41d3958a
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/alloc/src/boxed.rs:1985:9
[INFO] [stdout]   43:     0x628589d8af4f - std::sys::thread::unix::Thread::new::thread_start::hf277835320aa8e5a
[INFO] [stdout]                                at /rustc/bb624dcb4c8ab987e10c0808d92d76f3b84dd117/library/std/src/sys/thread/unix.rs:126:17
[INFO] [stdout]   44:     0x7af00bdc0aa4 - <unknown>
[INFO] [stdout]   45:     0x7af00be4da34 - clone
[INFO] [stdout]   46:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     mutation_processor::tests::test_handle_mutations
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 7 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.16s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] running `Command { std: "docker" "inspect" "28a70da87319562157c9545ff13ac135ecdb357a21fd5016143593a5429235a8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "28a70da87319562157c9545ff13ac135ecdb357a21fd5016143593a5429235a8", kill_on_drop: false }`
[INFO] [stdout] 28a70da87319562157c9545ff13ac135ecdb357a21fd5016143593a5429235a8
