[INFO] cloning repository https://github.com/michaelJwilson/rna_edit_distance
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/michaelJwilson/rna_edit_distance" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FmichaelJwilson%2Frna_edit_distance", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FmichaelJwilson%2Frna_edit_distance'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 76a028b2a7ee819f745d7708cec913f24a430721
[INFO] testing michaelJwilson/rna_edit_distance against 1.90.0 for beta-1.91-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FmichaelJwilson%2Frna_edit_distance" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/michaelJwilson/rna_edit_distance
[INFO] finished tweaking git repo https://github.com/michaelJwilson/rna_edit_distance
[INFO] tweaked toml for git repo https://github.com/michaelJwilson/rna_edit_distance written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/michaelJwilson/rna_edit_distance on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/michaelJwilson/rna_edit_distance already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded csv-core v0.1.11
[INFO] [stderr]   Downloaded openssl-sys v0.9.99
[INFO] [stderr]   Downloaded lzma-sys v0.1.20
[INFO] [stderr]   Downloaded csv v1.3.0
[INFO] [stderr]   Downloaded hts-sys v2.1.1
[INFO] [stderr]   Downloaded curl-sys v0.4.72+curl-8.6.0
[INFO] [stderr]   Downloaded openssl-src v300.2.3+3.2.1
[INFO] [stderr]   Downloaded libz-sys v1.1.15
[INFO] [stderr]   Downloaded rust-htslib v0.45.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a71ea00f0c709d7dca076fc1a56fef5c97e64abafe6529c513660c7319091ccc
[INFO] running `Command { std: "docker" "start" "-a" "a71ea00f0c709d7dca076fc1a56fef5c97e64abafe6529c513660c7319091ccc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a71ea00f0c709d7dca076fc1a56fef5c97e64abafe6529c513660c7319091ccc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a71ea00f0c709d7dca076fc1a56fef5c97e64abafe6529c513660c7319091ccc", kill_on_drop: false }`
[INFO] [stdout] a71ea00f0c709d7dca076fc1a56fef5c97e64abafe6529c513660c7319091ccc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b1638df4525ec40dd25125af181728ebdad6db0dc1f880782a502acea657de77
[INFO] running `Command { std: "docker" "start" "-a" "b1638df4525ec40dd25125af181728ebdad6db0dc1f880782a502acea657de77", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling pkg-config v0.3.30
[INFO] [stderr]    Compiling proc-macro2 v1.0.78
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling memchr v2.7.1
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling rustversion v1.0.14
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling thiserror v1.0.57
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling regex-syntax v0.8.2
[INFO] [stderr]    Compiling tinyvec v1.6.0
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling serde v1.0.196
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling itoa v1.0.10
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling ryu v1.0.16
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling either v1.10.0
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling aho-corasick v1.1.2
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling unicode-normalization v0.1.22
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling quote v1.0.35
[INFO] [stderr]    Compiling crossbeam-deque v0.8.5
[INFO] [stderr]    Compiling syn v2.0.48
[INFO] [stderr]    Compiling jobserver v0.1.28
[INFO] [stderr]    Compiling getrandom v0.2.12
[INFO] [stderr]    Compiling idna v0.5.0
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling rayon v1.8.1
[INFO] [stderr]    Compiling cc v1.0.83
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling url v2.5.0
[INFO] [stderr]    Compiling regex-automata v0.4.5
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling openssl-src v300.2.3+3.2.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.72+curl-8.6.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling hts-sys v2.1.1
[INFO] [stderr]    Compiling rna_edit_distance v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling openssl-sys v0.9.99
[INFO] [stderr]    Compiling libz-sys v1.1.15
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling regex v1.10.3
[INFO] [stderr]    Compiling thiserror-impl v1.0.57
[INFO] [stderr]    Compiling serde_derive v1.0.196
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling rust-htslib v0.45.0
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 56s
[INFO] running `Command { std: "docker" "inspect" "b1638df4525ec40dd25125af181728ebdad6db0dc1f880782a502acea657de77", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b1638df4525ec40dd25125af181728ebdad6db0dc1f880782a502acea657de77", kill_on_drop: false }`
[INFO] [stdout] b1638df4525ec40dd25125af181728ebdad6db0dc1f880782a502acea657de77
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b7c1b49708d602f8af29d75a432a8705a677d558463e6de881606ab5d7957071
[INFO] running `Command { std: "docker" "start" "-a" "b7c1b49708d602f8af29d75a432a8705a677d558463e6de881606ab5d7957071", kill_on_drop: false }`
[INFO] [stderr]    Compiling rna_edit_distance v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.79s
[INFO] running `Command { std: "docker" "inspect" "b7c1b49708d602f8af29d75a432a8705a677d558463e6de881606ab5d7957071", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b7c1b49708d602f8af29d75a432a8705a677d558463e6de881606ab5d7957071", kill_on_drop: false }`
[INFO] [stdout] b7c1b49708d602f8af29d75a432a8705a677d558463e6de881606ab5d7957071
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 8e3ac5b8234be6306a860396701e0185959bd0c4c60f654bb7ad41cbf47c7086
[INFO] running `Command { std: "docker" "start" "-a" "8e3ac5b8234be6306a860396701e0185959bd0c4c60f654bb7ad41cbf47c7086", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.08s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rna_edit_distance-5974bf13d87cc4bb)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test base_frac::test_base_frac::test_base_frac ... ok
[INFO] [stdout] test edit_distance::test_edit_distance::test_simulate_rna ... ok
[INFO] [stdout] test readers::test_read_csv::test_read_csv ... ok
[INFO] [stdout] test edit_distance::test_edit_distance::test_levenshtein_distance ... ok
[INFO] [stdout] test sim_rna::test_simulate_rna::test_simulate_rna ... ok
[INFO] [stdout] test edit_distance::test_edit_distance::test_error_on_input_z ... ok
[INFO] [stdout] test sim_rna_parallel::test_simulate_rna_parallel::test_simulate_rna_parallel ... ok
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/rna_edit_distance-37b37548d11f8d1e)
[INFO] [stdout] test edit_distance::test_edit_distance::test_levenshtein_distance_with_simulated_rna ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.16s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests rna_edit_distance
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/readers.rs - readers::read_csv (line 54) ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/readers.rs - readers::read_csv (line 54) stdout ----
[INFO] [stdout] error[E0425]: cannot find function `read_csv` in this scope
[INFO] [stdout]  --> src/readers.rs:56:15
[INFO] [stdout]   |
[INFO] [stdout] 4 | let records = read_csv(filename);
[INFO] [stdout]   |               ^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this function
[INFO] [stdout]   |
[INFO] [stdout] 2 + use rna_edit_distance::read_csv;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/readers.rs - readers::read_csv (line 54)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.13s
[INFO] [stdout] 
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] running `Command { std: "docker" "inspect" "8e3ac5b8234be6306a860396701e0185959bd0c4c60f654bb7ad41cbf47c7086", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8e3ac5b8234be6306a860396701e0185959bd0c4c60f654bb7ad41cbf47c7086", kill_on_drop: false }`
[INFO] [stdout] 8e3ac5b8234be6306a860396701e0185959bd0c4c60f654bb7ad41cbf47c7086
