[INFO] cloning repository https://github.com/illumination-k/sequence-manager
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/illumination-k/sequence-manager" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fillumination-k%2Fsequence-manager", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fillumination-k%2Fsequence-manager'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 054c8967dcb36b356ea43f4a72854ffb3510f0af
[INFO] testing illumination-k/sequence-manager against beta-2025-09-21 for beta-1.91-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fillumination-k%2Fsequence-manager" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/illumination-k/sequence-manager
[INFO] finished tweaking git repo https://github.com/illumination-k/sequence-manager
[INFO] tweaked toml for git repo https://github.com/illumination-k/sequence-manager written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/illumination-k/sequence-manager on toolchain beta-2025-09-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/illumination-k/sequence-manager already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
[INFO] [stderr] note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest
[INFO] [stderr] note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest
[INFO] [stderr] note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 93d417648cea2071749a0f7834c2d87c59eac5a7a131850348f4f533cebe9432
[INFO] running `Command { std: "docker" "start" "-a" "93d417648cea2071749a0f7834c2d87c59eac5a7a131850348f4f533cebe9432", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "93d417648cea2071749a0f7834c2d87c59eac5a7a131850348f4f533cebe9432", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "93d417648cea2071749a0f7834c2d87c59eac5a7a131850348f4f533cebe9432", kill_on_drop: false }`
[INFO] [stdout] 93d417648cea2071749a0f7834c2d87c59eac5a7a131850348f4f533cebe9432
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ea83dffee2478187aa02ccb586f254f1004f4b604c029b37808dc4c1c2856b02
[INFO] running `Command { std: "docker" "start" "-a" "ea83dffee2478187aa02ccb586f254f1004f4b604c029b37808dc4c1c2856b02", kill_on_drop: false }`
[INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
[INFO] [stderr] note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest
[INFO] [stderr] note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest
[INFO] [stderr] note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions
[INFO] [stderr]    Compiling libc v0.2.139
[INFO] [stderr]    Compiling quote v1.0.23
[INFO] [stderr]    Compiling syn v1.0.107
[INFO] [stderr]    Compiling once_cell v1.17.1
[INFO] [stderr]    Compiling cc v1.0.79
[INFO] [stderr]    Compiling smallvec v1.10.0
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling futures-core v0.3.26
[INFO] [stderr]    Compiling parking_lot_core v0.9.7
[INFO] [stderr]    Compiling bytes v1.4.0
[INFO] [stderr]    Compiling tokio v1.25.0
[INFO] [stderr]    Compiling ahash v0.7.6
[INFO] [stderr]    Compiling futures-sink v0.3.26
[INFO] [stderr]    Compiling slab v0.4.7
[INFO] [stderr]    Compiling itoa v1.0.5
[INFO] [stderr]    Compiling futures-task v0.3.26
[INFO] [stderr]    Compiling openssl v0.10.45
[INFO] [stderr]    Compiling futures-util v0.3.26
[INFO] [stderr]    Compiling futures-io v0.3.26
[INFO] [stderr]    Compiling generic-array v0.14.6
[INFO] [stderr]    Compiling futures-channel v0.3.26
[INFO] [stderr]    Compiling unicode-bidi v0.3.10
[INFO] [stderr]    Compiling tracing-core v0.1.30
[INFO] [stderr]    Compiling serde_derive v1.0.152
[INFO] [stderr]    Compiling parking_lot_core v0.8.6
[INFO] [stderr]    Compiling tracing v0.1.37
[INFO] [stderr]    Compiling http v0.2.8
[INFO] [stderr]    Compiling idna v0.3.0
[INFO] [stderr]    Compiling openssl-sys v0.9.80
[INFO] [stderr]    Compiling instant v0.1.12
[INFO] [stderr]    Compiling serde v1.0.152
[INFO] [stderr]    Compiling crossbeam-utils v0.8.14
[INFO] [stderr]    Compiling libsqlite3-sys v0.24.2
[INFO] [stderr]    Compiling block-buffer v0.10.3
[INFO] [stderr]    Compiling crypto-common v0.1.6
[INFO] [stderr]    Compiling try-lock v0.2.4
[INFO] [stderr]    Compiling thiserror v1.0.38
[INFO] [stderr]    Compiling crossbeam-queue v0.3.8
[INFO] [stderr]    Compiling native-tls v0.2.11
[INFO] [stderr]    Compiling io-lifetimes v1.0.5
[INFO] [stderr]    Compiling either v1.8.1
[INFO] [stderr]    Compiling url v2.3.1
[INFO] [stderr]    Compiling signal-hook-registry v1.4.1
[INFO] [stderr]    Compiling num_cpus v1.15.0
[INFO] [stderr]    Compiling parking_lot v0.12.1
[INFO] [stderr]    Compiling socket2 v0.4.7
[INFO] [stderr]    Compiling mio v0.8.6
[INFO] [stderr]    Compiling getrandom v0.2.8
[INFO] [stderr]    Compiling paste v1.0.11
[INFO] [stderr]    Compiling hashbrown v0.12.3
[INFO] [stderr]    Compiling parking_lot v0.11.2
[INFO] [stderr]    Compiling http-body v0.4.5
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling want v0.3.0
[INFO] [stderr]    Compiling digest v0.10.6
[INFO] [stderr]    Compiling indexmap v1.9.2
[INFO] [stderr]    Compiling spin v0.9.5
[INFO] [stderr]    Compiling cpufeatures v0.2.5
[INFO] [stderr]    Compiling crc-catalog v2.2.0
[INFO] [stderr]    Compiling rustix v0.36.8
[INFO] [stderr]    Compiling ryu v1.0.12
[INFO] [stderr]    Compiling httpdate v1.0.2
[INFO] [stderr]    Compiling crc v3.0.1
[INFO] [stderr]    Compiling sha2 v0.10.6
[INFO] [stderr]    Compiling futures-executor v0.3.26
[INFO] [stderr]    Compiling tokio-macros v1.8.2
[INFO] [stderr]    Compiling openssl-macros v0.1.0
[INFO] [stderr]    Compiling pin-project-internal v1.0.12
[INFO] [stderr]    Compiling thiserror-impl v1.0.38
[INFO] [stderr]    Compiling hashlink v0.8.1
[INFO] [stderr]    Compiling sqlformat v0.2.1
[INFO] [stderr]    Compiling atoi v1.0.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling pin-project v1.0.12
[INFO] [stderr]    Compiling flume v0.10.14
[INFO] [stderr]    Compiling futures-intrusive v0.4.2
[INFO] [stderr]    Compiling stringprep v0.1.2
[INFO] [stderr]    Compiling dotenvy v0.15.6
[INFO] [stderr]    Compiling linux-raw-sys v0.1.4
[INFO] [stderr]    Compiling anyhow v1.0.69
[INFO] [stderr]    Compiling serde_json v1.0.93
[INFO] [stderr]    Compiling async-trait v0.1.64
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling encoding_rs v0.8.32
[INFO] [stderr]    Compiling ipnet v2.7.1
[INFO] [stderr]    Compiling base64 v0.21.0
[INFO] [stderr]    Compiling os_str_bytes v6.4.1
[INFO] [stderr]    Compiling mime v0.3.16
[INFO] [stderr]    Compiling clap_lex v0.3.1
[INFO] [stderr]    Compiling miniz_oxide v0.6.2
[INFO] [stderr]    Compiling is-terminal v0.4.3
[INFO] [stderr]    Compiling clap_derive v4.1.0
[INFO] [stderr]    Compiling xattr v0.2.3
[INFO] [stderr]    Compiling filetime v0.2.20
[INFO] [stderr]    Compiling tar v0.4.38
[INFO] [stderr]    Compiling flate2 v1.0.25
[INFO] [stderr]    Compiling tokio-native-tls v0.3.1
[INFO] [stderr]    Compiling tokio-util v0.7.7
[INFO] [stderr]    Compiling sqlx-rt v0.6.2
[INFO] [stderr]    Compiling tokio-stream v0.1.11
[INFO] [stderr]    Compiling clap v4.1.6
[INFO] [stderr]    Compiling h2 v0.3.15
[INFO] [stderr]    Compiling common v0.1.0 (/opt/rustwide/workdir/common)
[INFO] [stderr]    Compiling onekp v0.1.0 (/opt/rustwide/workdir/onekp)
[INFO] [stderr]    Compiling phytozome v0.1.0 (/opt/rustwide/workdir/phytozome)
[INFO] [stderr]    Compiling serde_urlencoded v0.7.1
[INFO] [stderr]    Compiling hyper v0.14.24
[INFO] [stderr]    Compiling sqlx-core v0.6.2
[INFO] [stderr]    Compiling hyper-tls v0.5.0
[INFO] [stderr]    Compiling reqwest v0.11.14
[INFO] [stderr]    Compiling cli v0.1.0 (/opt/rustwide/workdir/cli)
[INFO] [stderr]    Compiling sqlx-macros v0.6.2
[INFO] [stdout] warning: unused variable: `gzip`
[INFO] [stdout]   --> cli/src/main.rs:75:63
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Self::URL { source, taxonomy_id: _, name, url: _, gzip, version } => {
[INFO] [stdout]    |                                                               ^^^^ help: try ignoring the field: `gzip: _`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `SequenceType` is never used
[INFO] [stdout]  --> cli/src/main.rs:5:6
[INFO] [stdout]   |
[INFO] [stdout] 5 | enum SequenceType {
[INFO] [stdout]   |      ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `Source` is never used
[INFO] [stdout]   --> cli/src/main.rs:20:6
[INFO] [stdout]    |
[INFO] [stdout] 20 | enum Source {
[INFO] [stdout]    |      ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `LockObject` is never used
[INFO] [stdout]   --> cli/src/main.rs:37:6
[INFO] [stdout]    |
[INFO] [stdout] 37 | enum LockObject {
[INFO] [stdout]    |      ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `to_url` and `to_path` are never used
[INFO] [stdout]   --> cli/src/main.rs:61:8
[INFO] [stdout]    |
[INFO] [stdout] 60 | impl LockObject {
[INFO] [stdout]    | --------------- methods in this implementation
[INFO] [stdout] 61 |     fn to_url(&self) {}
[INFO] [stdout]    |        ^^^^^^
[INFO] [stdout] 62 |     fn to_path(&self, mut root: PathBuf, sequence_type: SequenceType) -> PathBuf {
[INFO] [stdout]    |        ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling sqlx v0.6.2
[INFO] [stderr]    Compiling taxonomy v0.1.0 (/opt/rustwide/workdir/taxonomy)
[INFO] [stdout] warning: associated functions `init` and `new` are never used
[INFO] [stdout]   --> taxonomy/src/lib.rs:34:8
[INFO] [stdout]    |
[INFO] [stdout] 33 | impl TaxonomyRecord {
[INFO] [stdout]    | ------------------- associated functions in this implementation
[INFO] [stdout] 34 |     fn init(id: u32, parent_id: u32, rank: TaxonomyRank) -> Self {
[INFO] [stdout]    |        ^^^^
[INFO] [stdout] ...
[INFO] [stdout] 44 |     fn new(
[INFO] [stdout]    |        ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `read_nodes` is never used
[INFO] [stdout]    --> taxonomy/src/lib.rs:117:4
[INFO] [stdout]     |
[INFO] [stdout] 117 | fn read_nodes(path: &Path, recs: &mut HashMap<u32, TaxonomyRecord>) -> Result<()> {
[INFO] [stdout]     |    ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `read_names` is never used
[INFO] [stdout]    --> taxonomy/src/lib.rs:195:4
[INFO] [stdout]     |
[INFO] [stdout] 195 | fn read_names(path: &Path, recs: &mut HashMap<u32, TaxonomyRecord>) -> Result<()> {
[INFO] [stdout]     |    ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `downlaod_taxonomy_dump` is never used
[INFO] [stdout]    --> taxonomy/src/lib.rs:227:4
[INFO] [stdout]     |
[INFO] [stdout] 227 | fn downlaod_taxonomy_dump(path: &Path) -> Result<()> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 02s
[INFO] running `Command { std: "docker" "inspect" "ea83dffee2478187aa02ccb586f254f1004f4b604c029b37808dc4c1c2856b02", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ea83dffee2478187aa02ccb586f254f1004f4b604c029b37808dc4c1c2856b02", kill_on_drop: false }`
[INFO] [stdout] ea83dffee2478187aa02ccb586f254f1004f4b604c029b37808dc4c1c2856b02
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1115fc888e59290645ab8e062b2c378c335741ae11470dac20992f20fd76f39b
[INFO] running `Command { std: "docker" "start" "-a" "1115fc888e59290645ab8e062b2c378c335741ae11470dac20992f20fd76f39b", kill_on_drop: false }`
[INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
[INFO] [stderr] note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest
[INFO] [stderr] note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest
[INFO] [stderr] note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions
[INFO] [stdout] warning: associated functions `init` and `new` are never used
[INFO] [stdout]   --> taxonomy/src/lib.rs:34:8
[INFO] [stdout]    |
[INFO] [stdout] 33 | impl TaxonomyRecord {
[INFO] [stdout]    | ------------------- associated functions in this implementation
[INFO] [stdout] 34 |     fn init(id: u32, parent_id: u32, rank: TaxonomyRank) -> Self {
[INFO] [stdout]    |        ^^^^
[INFO] [stdout] ...
[INFO] [stdout] 44 |     fn new(
[INFO] [stdout]    |        ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling taxonomy v0.1.0 (/opt/rustwide/workdir/taxonomy)
[INFO] [stdout] warning: function `read_nodes` is never used
[INFO] [stdout]    --> taxonomy/src/lib.rs:117:4
[INFO] [stdout]     |
[INFO] [stdout] 117 | fn read_nodes(path: &Path, recs: &mut HashMap<u32, TaxonomyRecord>) -> Result<()> {
[INFO] [stdout]     |    ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling common v0.1.0 (/opt/rustwide/workdir/common)
[INFO] [stdout] warning: function `read_names` is never used
[INFO] [stdout]    --> taxonomy/src/lib.rs:195:4
[INFO] [stdout]     |
[INFO] [stdout] 195 | fn read_names(path: &Path, recs: &mut HashMap<u32, TaxonomyRecord>) -> Result<()> {
[INFO] [stdout]     |    ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `downlaod_taxonomy_dump` is never used
[INFO] [stdout]    --> taxonomy/src/lib.rs:227:4
[INFO] [stdout]     |
[INFO] [stdout] 227 | fn downlaod_taxonomy_dump(path: &Path) -> Result<()> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling onekp v0.1.0 (/opt/rustwide/workdir/onekp)
[INFO] [stderr]    Compiling phytozome v0.1.0 (/opt/rustwide/workdir/phytozome)
[INFO] [stderr]    Compiling cli v0.1.0 (/opt/rustwide/workdir/cli)
[INFO] [stdout] warning: unused variable: `gzip`
[INFO] [stdout]   --> cli/src/main.rs:75:63
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Self::URL { source, taxonomy_id: _, name, url: _, gzip, version } => {
[INFO] [stdout]    |                                                               ^^^^ help: try ignoring the field: `gzip: _`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `SequenceType` is never used
[INFO] [stdout]  --> cli/src/main.rs:5:6
[INFO] [stdout]   |
[INFO] [stdout] 5 | enum SequenceType {
[INFO] [stdout]   |      ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `Source` is never used
[INFO] [stdout]   --> cli/src/main.rs:20:6
[INFO] [stdout]    |
[INFO] [stdout] 20 | enum Source {
[INFO] [stdout]    |      ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `LockObject` is never used
[INFO] [stdout]   --> cli/src/main.rs:37:6
[INFO] [stdout]    |
[INFO] [stdout] 37 | enum LockObject {
[INFO] [stdout]    |      ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `to_url` and `to_path` are never used
[INFO] [stdout]   --> cli/src/main.rs:61:8
[INFO] [stdout]    |
[INFO] [stdout] 60 | impl LockObject {
[INFO] [stdout]    | --------------- methods in this implementation
[INFO] [stdout] 61 |     fn to_url(&self) {}
[INFO] [stdout]    |        ^^^^^^
[INFO] [stdout] 62 |     fn to_path(&self, mut root: PathBuf, sequence_type: SequenceType) -> PathBuf {
[INFO] [stdout]    |        ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `recs`
[INFO] [stdout]    --> taxonomy/src/lib.rs:246:13
[INFO] [stdout]     |
[INFO] [stdout] 246 |         let recs = _load_taxonomy_from_dump(
[INFO] [stdout]     |             ^^^^ help: if this is intentional, prefix it with an underscore: `_recs`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]   --> taxonomy/src/lib.rs:44:8
[INFO] [stdout]    |
[INFO] [stdout] 33 | impl TaxonomyRecord {
[INFO] [stdout]    | ------------------- associated function in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 44 |     fn new(
[INFO] [stdout]    |        ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 3.80s
[INFO] running `Command { std: "docker" "inspect" "1115fc888e59290645ab8e062b2c378c335741ae11470dac20992f20fd76f39b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1115fc888e59290645ab8e062b2c378c335741ae11470dac20992f20fd76f39b", kill_on_drop: false }`
[INFO] [stdout] 1115fc888e59290645ab8e062b2c378c335741ae11470dac20992f20fd76f39b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] c0a3fd87d9910fa36f23bbcfb654d99aa29e62798e7d87598465663aed3b4ba0
[INFO] running `Command { std: "docker" "start" "-a" "c0a3fd87d9910fa36f23bbcfb654d99aa29e62798e7d87598465663aed3b4ba0", kill_on_drop: false }`
[INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
[INFO] [stderr] note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest
[INFO] [stderr] note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest
[INFO] [stderr] note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions
[INFO] [stderr] warning: associated functions `init` and `new` are never used
[INFO] [stderr]   --> taxonomy/src/lib.rs:34:8
[INFO] [stderr]    |
[INFO] [stderr] 33 | impl TaxonomyRecord {
[INFO] [stderr]    | ------------------- associated functions in this implementation
[INFO] [stderr] 34 |     fn init(id: u32, parent_id: u32, rank: TaxonomyRank) -> Self {
[INFO] [stderr]    |        ^^^^
[INFO] [stderr] ...
[INFO] [stderr] 44 |     fn new(
[INFO] [stderr]    |        ^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function `read_nodes` is never used
[INFO] [stderr]    --> taxonomy/src/lib.rs:117:4
[INFO] [stderr]     |
[INFO] [stderr] 117 | fn read_nodes(path: &Path, recs: &mut HashMap<u32, TaxonomyRecord>) -> Result<()> {
[INFO] [stderr]     |    ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `read_names` is never used
[INFO] [stderr]    --> taxonomy/src/lib.rs:195:4
[INFO] [stderr]     |
[INFO] [stderr] 195 | fn read_names(path: &Path, recs: &mut HashMap<u32, TaxonomyRecord>) -> Result<()> {
[INFO] [stderr]     |    ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `downlaod_taxonomy_dump` is never used
[INFO] [stderr]    --> taxonomy/src/lib.rs:227:4
[INFO] [stderr]     |
[INFO] [stderr] 227 | fn downlaod_taxonomy_dump(path: &Path) -> Result<()> {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `recs`
[INFO] [stderr]    --> taxonomy/src/lib.rs:246:13
[INFO] [stderr]     |
[INFO] [stderr] 246 |         let recs = _load_taxonomy_from_dump(
[INFO] [stderr]     |             ^^^^ help: if this is intentional, prefix it with an underscore: `_recs`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: associated function `new` is never used
[INFO] [stderr]   --> taxonomy/src/lib.rs:44:8
[INFO] [stderr]    |
[INFO] [stderr] 33 | impl TaxonomyRecord {
[INFO] [stderr]    | ------------------- associated function in this implementation
[INFO] [stderr] ...
[INFO] [stderr] 44 |     fn new(
[INFO] [stderr]    |        ^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `taxonomy` (lib) generated 4 warnings
[INFO] [stderr] warning: `taxonomy` (lib test) generated 2 warnings
[INFO] [stderr] warning: unused variable: `gzip`
[INFO] [stderr]   --> cli/src/main.rs:75:63
[INFO] [stderr]    |
[INFO] [stderr] 75 |             Self::URL { source, taxonomy_id: _, name, url: _, gzip, version } => {
[INFO] [stderr]    |                                                               ^^^^ help: try ignoring the field: `gzip: _`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: enum `SequenceType` is never used
[INFO] [stderr]  --> cli/src/main.rs:5:6
[INFO] [stderr]   |
[INFO] [stderr] 5 | enum SequenceType {
[INFO] [stderr]   |      ^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: enum `Source` is never used
[INFO] [stderr]   --> cli/src/main.rs:20:6
[INFO] [stderr]    |
[INFO] [stderr] 20 | enum Source {
[INFO] [stderr]    |      ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: enum `LockObject` is never used
[INFO] [stderr]   --> cli/src/main.rs:37:6
[INFO] [stderr]    |
[INFO] [stderr] 37 | enum LockObject {
[INFO] [stderr]    |      ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: methods `to_url` and `to_path` are never used
[INFO] [stderr]   --> cli/src/main.rs:61:8
[INFO] [stderr]    |
[INFO] [stderr] 60 | impl LockObject {
[INFO] [stderr]    | --------------- methods in this implementation
[INFO] [stderr] 61 |     fn to_url(&self) {}
[INFO] [stderr]    |        ^^^^^^
[INFO] [stderr] 62 |     fn to_path(&self, mut root: PathBuf, sequence_type: SequenceType) -> PathBuf {
[INFO] [stderr]    |        ^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `cli` (bin "cli" test) generated 5 warnings
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.23s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/cli-d01f0aaea8bd8a13)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/common-7205cf6132c153e5)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/onekp-a579c4c434869b7e)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/phytozome-2cfddf853d87dfcb)
[INFO] [stdout] test tests::it_works ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test tests::it_works ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/taxonomy-7b03b34d80476ca7)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test sql::test_sql::test_create_table ... FAILED
[INFO] [stdout] test test_taxonomy::test_download_and_load ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- sql::test_sql::test_create_table stdout ----
[INFO] [stdout] Error: environment variable not found
[INFO] [stdout] 
[INFO] [stdout] ---- test_taxonomy::test_download_and_load stdout ----
[INFO] [stdout] Error: error sending request for url (https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz): error trying to connect: dns error: failed to lookup address information: Temporary failure in name resolution
[INFO] [stdout] 
[INFO] [stdout] Caused by:
[INFO] [stdout]     0: error trying to connect: dns error: failed to lookup address information: Temporary failure in name resolution
[INFO] [stdout]     1: dns error: failed to lookup address information: Temporary failure in name resolution
[INFO] [stdout]     2: failed to lookup address information: Temporary failure in name resolution
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     sql::test_sql::test_create_table
[INFO] [stdout]     test_taxonomy::test_download_and_load
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 0 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.11s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `-p taxonomy --lib`
[INFO] running `Command { std: "docker" "inspect" "c0a3fd87d9910fa36f23bbcfb654d99aa29e62798e7d87598465663aed3b4ba0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c0a3fd87d9910fa36f23bbcfb654d99aa29e62798e7d87598465663aed3b4ba0", kill_on_drop: false }`
[INFO] [stdout] c0a3fd87d9910fa36f23bbcfb654d99aa29e62798e7d87598465663aed3b4ba0
