[INFO] cloning repository https://github.com/10XGenomics/bamtofastq
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/bamtofastq" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] f7d9adc1604a6205710963f4f53bbbde4e24624f
[INFO] testing 10XGenomics/bamtofastq against 1.90.0 for beta-1.91-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-5-tc1/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] finished tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] tweaked toml for git repo https://github.com/10XGenomics/bamtofastq written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/10XGenomics/bamtofastq on toolchain 1.90.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/10XGenomics/bamtofastq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded thiserror-impl v1.0.39
[INFO] [stderr]   Downloaded shardio v0.8.2
[INFO] [stderr]   Downloaded thiserror v1.0.39
[INFO] [stderr]   Downloaded anyhow v1.0.72
[INFO] [stderr]   Downloaded docopt v1.1.1
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded serde_bytes v0.11.10
[INFO] [stderr]   Downloaded serde_derive v1.0.156
[INFO] [stderr]   Downloaded regex v1.10.0
[INFO] [stderr]   Downloaded rust-htslib v0.44.1
[INFO] [stderr]   Downloaded serde v1.0.156
[INFO] [stderr]   Downloaded bio-types v0.13.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded libdeflate-sys v0.7.5
[INFO] [stderr]   Downloaded regex-automata v0.4.1
[INFO] [stderr]   Downloaded itertools v0.12.0
[INFO] [stderr]   Downloaded libz-sys v1.1.12
[INFO] [stderr]   Downloaded curl-sys v0.4.61+curl-8.0.1
[INFO] [stderr]   Downloaded regex-syntax v0.8.0
[INFO] [stderr]   Downloaded hts-sys v2.1.1
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b4a9d8de0cac0a1cab2599f33c0cebd81013ec57ac69bd541cf159a63f5a05cc
[INFO] running `Command { std: "docker" "start" "-a" "b4a9d8de0cac0a1cab2599f33c0cebd81013ec57ac69bd541cf159a63f5a05cc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b4a9d8de0cac0a1cab2599f33c0cebd81013ec57ac69bd541cf159a63f5a05cc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b4a9d8de0cac0a1cab2599f33c0cebd81013ec57ac69bd541cf159a63f5a05cc", kill_on_drop: false }`
[INFO] [stdout] b4a9d8de0cac0a1cab2599f33c0cebd81013ec57ac69bd541cf159a63f5a05cc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8792e3257898de3206a221c304115ffebdf2c19d806f71728927912f67691d56
[INFO] running `Command { std: "docker" "start" "-a" "8792e3257898de3206a221c304115ffebdf2c19d806f71728927912f67691d56", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.149
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling memchr v2.6.4
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling serde_derive v1.0.156
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling serde v1.0.156
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling regex-syntax v0.8.0
[INFO] [stderr]    Compiling rustversion v1.0.12
[INFO] [stderr]    Compiling tinyvec v1.6.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling adler v1.0.2
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling crossbeam-utils v0.8.15
[INFO] [stderr]    Compiling thiserror v1.0.39
[INFO] [stderr]    Compiling gimli v0.27.2
[INFO] [stderr]    Compiling miniz_oxide v0.7.1
[INFO] [stderr]    Compiling rustc-demangle v0.1.21
[INFO] [stderr]    Compiling rustix v0.38.21
[INFO] [stderr]    Compiling anyhow v1.0.72
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling percent-encoding v2.2.0
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling unicode-bidi v0.3.13
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling form_urlencoded v1.1.0
[INFO] [stderr]    Compiling aho-corasick v1.0.1
[INFO] [stderr]    Compiling object v0.31.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling bitflags v2.4.1
[INFO] [stderr]    Compiling linux-raw-sys v0.4.10
[INFO] [stderr]    Compiling crossbeam-channel v0.5.7
[INFO] [stderr]    Compiling jobserver v0.1.26
[INFO] [stderr]    Compiling unicode-normalization v0.1.22
[INFO] [stderr]    Compiling cc v1.0.79
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling either v1.8.1
[INFO] [stderr]    Compiling fastrand v2.0.0
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling min-max-heap v1.3.0
[INFO] [stderr]    Compiling idna v0.3.0
[INFO] [stderr]    Compiling ryu v1.0.13
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling itoa v1.0.6
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling itertools v0.12.0
[INFO] [stderr]    Compiling cmake v0.1.49
[INFO] [stderr]    Compiling regex-automata v0.4.1
[INFO] [stderr]    Compiling addr2line v0.20.0
[INFO] [stderr]    Compiling url v2.3.1
[INFO] [stderr]    Compiling libz-sys v1.1.12
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling libdeflate-sys v0.7.5
[INFO] [stderr]    Compiling lz4-sys v1.9.4
[INFO] [stderr]    Compiling backtrace v0.3.68
[INFO] [stderr]    Compiling thiserror-impl v1.0.39
[INFO] [stderr]    Compiling hts-sys v2.1.1
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling tempfile v3.8.1
[INFO] [stderr]    Compiling regex v1.10.0
[INFO] [stderr]    Compiling bio-types v0.13.0
[INFO] [stderr]    Compiling flate2 v1.0.28
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling csv v1.2.2
[INFO] [stderr]    Compiling docopt v1.1.1
[INFO] [stderr]    Compiling serde_bytes v0.11.10
[INFO] [stderr]    Compiling lz4 v1.24.0
[INFO] [stderr]    Compiling shardio v0.8.2
[INFO] [stderr]    Compiling rust-htslib v0.44.1
[INFO] [stderr]    Compiling bamtofastq v1.4.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]    --> src/main.rs:161:20
[INFO] [stdout]     |
[INFO] [stdout] 161 |     fn sort_key(t: &SerFq) -> Cow<Vec<u8>> {
[INFO] [stdout]     |                    ^^^^^^     ------------ the same lifetime is hidden here
[INFO] [stdout]     |                    |
[INFO] [stdout]     |                    the lifetime is elided here
[INFO] [stdout]     |
[INFO] [stdout]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]     |
[INFO] [stdout] 161 |     fn sort_key(t: &SerFq) -> Cow<'_, Vec<u8>> {
[INFO] [stdout]     |                                   +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [optimized + debuginfo] target(s) in 3m 04s
[INFO] running `Command { std: "docker" "inspect" "8792e3257898de3206a221c304115ffebdf2c19d806f71728927912f67691d56", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8792e3257898de3206a221c304115ffebdf2c19d806f71728927912f67691d56", kill_on_drop: false }`
[INFO] [stdout] 8792e3257898de3206a221c304115ffebdf2c19d806f71728927912f67691d56
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 24b9f4690031a9ca592b38a496f8bc9225b01ef976826c69e062c3864296e523
[INFO] running `Command { std: "docker" "start" "-a" "24b9f4690031a9ca592b38a496f8bc9225b01ef976826c69e062c3864296e523", kill_on_drop: false }`
[INFO] [stderr]    Compiling bamtofastq v1.4.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]    --> src/main.rs:161:20
[INFO] [stdout]     |
[INFO] [stdout] 161 |     fn sort_key(t: &SerFq) -> Cow<Vec<u8>> {
[INFO] [stdout]     |                    ^^^^^^     ------------ the same lifetime is hidden here
[INFO] [stdout]     |                    |
[INFO] [stdout]     |                    the lifetime is elided here
[INFO] [stdout]     |
[INFO] [stdout]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]     |
[INFO] [stdout] 161 |     fn sort_key(t: &SerFq) -> Cow<'_, Vec<u8>> {
[INFO] [stdout]     |                                   +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [optimized + debuginfo] target(s) in 16.28s
[INFO] running `Command { std: "docker" "inspect" "24b9f4690031a9ca592b38a496f8bc9225b01ef976826c69e062c3864296e523", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "24b9f4690031a9ca592b38a496f8bc9225b01ef976826c69e062c3864296e523", kill_on_drop: false }`
[INFO] [stdout] 24b9f4690031a9ca592b38a496f8bc9225b01ef976826c69e062c3864296e523
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 8e4286ee9fdedf32525f8c88602de8eb64eb5b9ea5628002b9e017051865c4c2
[INFO] running `Command { std: "docker" "start" "-a" "8e4286ee9fdedf32525f8c88602de8eb64eb5b9ea5628002b9e017051865c4c2", kill_on_drop: false }`
[INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stderr]    --> src/main.rs:161:20
[INFO] [stderr]     |
[INFO] [stderr] 161 |     fn sort_key(t: &SerFq) -> Cow<Vec<u8>> {
[INFO] [stderr]     |                    ^^^^^^     ------------ the same lifetime is hidden here
[INFO] [stderr]     |                    |
[INFO] [stderr]     |                    the lifetime is elided here
[INFO] [stderr]     |
[INFO] [stderr]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stderr]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stderr] help: use `'_` for type paths
[INFO] [stderr]     |
[INFO] [stderr] 161 |     fn sort_key(t: &SerFq) -> Cow<'_, Vec<u8>> {
[INFO] [stderr]     |                                   +++
[INFO] [stderr] 
[INFO] [stderr] warning: `bamtofastq` (bin "bamtofastq" test) generated 1 warning
[INFO] [stderr]     Finished `test` profile [optimized + debuginfo] target(s) in 0.18s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/bamtofastq-994c7a640952ab1c)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test tests::bad_bam ... ok
[INFO] [stdout] test tests::wrong_header ... ok
[INFO] [stdout] test tests::unpaired_record ... ok
[INFO] [stdout] test tests::test_lr21 ... ok
[INFO] [stdout] test tests::test_lr20 ... ok
[INFO] [stdout] test tests::test_cr12_v1 ... ok
[INFO] [stdout] test tests::test_cr12 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.48s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "8e4286ee9fdedf32525f8c88602de8eb64eb5b9ea5628002b9e017051865c4c2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8e4286ee9fdedf32525f8c88602de8eb64eb5b9ea5628002b9e017051865c4c2", kill_on_drop: false }`
[INFO] [stdout] 8e4286ee9fdedf32525f8c88602de8eb64eb5b9ea5628002b9e017051865c4c2
