[INFO] fetching crate exon-bcf 0.32.4... [INFO] testing exon-bcf-0.32.4 against 1.90.0 for beta-1.91-2 [INFO] extracting crate exon-bcf 0.32.4 into /workspace/builds/worker-1-tc1/source [INFO] started tweaking crates.io crate exon-bcf 0.32.4 [INFO] finished tweaking crates.io crate exon-bcf 0.32.4 [INFO] tweaked toml for crates.io crate exon-bcf 0.32.4 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate exon-bcf 0.32.4 on toolchain 1.90.0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Locking 297 packages to latest compatible versions [INFO] [stderr] Adding arrow v53.4.1 (available: v56.2.0) [INFO] [stderr] Adding async-compression v0.4.19 (available: v0.4.31) [INFO] [stderr] Adding chrono v0.4.39 (available: v0.4.42) [INFO] [stderr] Adding noodles v0.86.0 (available: v0.101.0) [INFO] [stderr] Adding object_store v0.11.2 (available: v0.12.4) [INFO] [stderr] Adding zstd-safe v7.2.1 (available: v7.2.4) [INFO] [stderr] Adding zstd-sys v2.0.13+zstd.1.5.6 (available: v2.0.16+zstd.1.5.7) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.90.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded noodles-core v0.15.0 [INFO] [stderr] Downloaded noodles v0.86.0 [INFO] [stderr] Downloaded noodles-tabix v0.47.0 [INFO] [stderr] Downloaded snafu-derive v0.8.9 [INFO] [stderr] Downloaded noodles-bgzf v0.34.0 [INFO] [stderr] Downloaded noodles-vcf v0.69.0 [INFO] [stderr] Downloaded arrow-row v53.4.1 [INFO] [stderr] Downloaded arrow-string v53.4.1 [INFO] [stderr] Downloaded arrow-select v53.4.1 [INFO] [stderr] Downloaded noodles-fasta v0.46.0 [INFO] [stderr] Downloaded datafusion-catalog v43.0.0 [INFO] [stderr] Downloaded datafusion-functions-nested v43.0.0 [INFO] [stderr] Downloaded datafusion-common-runtime v43.0.0 [INFO] [stderr] Downloaded arrow v53.4.1 [INFO] [stderr] Downloaded datafusion-physical-optimizer v43.0.0 [INFO] [stderr] Downloaded datafusion-physical-expr v43.0.0 [INFO] [stderr] Downloaded datafusion-functions-aggregate v43.0.0 [INFO] [stderr] Downloaded datafusion-functions v43.0.0 [INFO] [stderr] Downloaded arrow-ipc v53.4.1 [INFO] [stderr] Downloaded datafusion-optimizer v43.0.0 [INFO] [stderr] Downloaded sqlparser v0.51.0 [INFO] [stderr] Downloaded noodles-bam v0.71.0 [INFO] [stderr] Downloaded datafusion-physical-plan v43.0.0 [INFO] [stderr] Downloaded arrow-buffer v53.4.1 [INFO] [stderr] Downloaded noodles-cram v0.72.0 [INFO] [stderr] Downloaded arrow-array v53.4.1 [INFO] [stderr] Downloaded datafusion-expr v43.0.0 [INFO] [stderr] Downloaded async-compression v0.4.19 [INFO] [stderr] Downloaded datafusion v43.0.0 [INFO] [stderr] Downloaded arrow-cast v53.4.1 [INFO] [stderr] Downloaded lexical-parse-float v1.0.6 [INFO] [stderr] Downloaded lexical-util v1.0.7 [INFO] [stderr] Downloaded parquet v53.4.1 [INFO] [stderr] Downloaded arrow-data v53.4.1 [INFO] [stderr] Downloaded datafusion-execution v43.0.0 [INFO] [stderr] Downloaded arrow-csv v53.4.1 [INFO] [stderr] Downloaded arrow-ord v53.4.1 [INFO] [stderr] Downloaded datafusion-physical-expr-common v43.0.0 [INFO] [stderr] Downloaded lexical-write-float v1.0.6 [INFO] [stderr] Downloaded datafusion-functions-aggregate-common v43.0.0 [INFO] [stderr] Downloaded arrow-json v53.4.1 [INFO] [stderr] Downloaded datafusion-expr-common v43.0.0 [INFO] [stderr] Downloaded comfy-table v7.2.1 [INFO] [stderr] Downloaded exon-common v0.32.4 [INFO] [stderr] Downloaded noodles-bcf v0.65.0 [INFO] [stderr] Downloaded noodles-fastq v0.16.0 [INFO] [stderr] Downloaded lexical-parse-integer v1.0.6 [INFO] [stderr] Downloaded datafusion-functions-window v43.0.0 [INFO] [stderr] Downloaded datafusion-functions-window-common v43.0.0 [INFO] [stderr] Downloaded arrow-arith v53.4.1 [INFO] [stderr] Downloaded datafusion-sql v43.0.0 [INFO] [stderr] Downloaded twox-hash v2.1.2 [INFO] [stderr] Downloaded lexical-write-integer v1.0.6 [INFO] [stderr] Downloaded lexical-core v1.0.6 [INFO] [stderr] Downloaded datafusion-common v43.0.0 [INFO] [stderr] Downloaded arrow-schema v53.4.1 [INFO] [stderr] Downloaded sqlparser_derive v0.2.2 [INFO] [stderr] Downloaded exon-vcf v0.32.4 [INFO] [stderr] Downloaded noodles-gff v0.40.0 [INFO] [stderr] Downloaded noodles-sam v0.67.0 [INFO] [stderr] Downloaded snafu v0.8.9 [INFO] [stderr] Downloaded noodles-csi v0.41.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f98ad0da54adaeab5ec9ca99f5e722abc1b60251a4b31a2b33b0f3d156465afe [INFO] running `Command { std: "docker" "start" "-a" "f98ad0da54adaeab5ec9ca99f5e722abc1b60251a4b31a2b33b0f3d156465afe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f98ad0da54adaeab5ec9ca99f5e722abc1b60251a4b31a2b33b0f3d156465afe", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f98ad0da54adaeab5ec9ca99f5e722abc1b60251a4b31a2b33b0f3d156465afe", kill_on_drop: false }` [INFO] [stdout] f98ad0da54adaeab5ec9ca99f5e722abc1b60251a4b31a2b33b0f3d156465afe [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ab77af67ae5f8eb019455a773b5975f6dedc4f4582e4a44e9a3617eb97c9fbc8 [INFO] running `Command { std: "docker" "start" "-a" "ab77af67ae5f8eb019455a773b5975f6dedc4f4582e4a44e9a3617eb97c9fbc8", kill_on_drop: false }` [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Compiling chrono-tz v0.10.4 [INFO] [stderr] Compiling arrow-schema v53.4.1 [INFO] [stderr] Compiling hashbrown v0.15.5 [INFO] [stderr] Compiling phf_shared v0.12.1 [INFO] [stderr] Compiling lexical-util v1.0.7 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling chrono v0.4.39 [INFO] [stderr] Compiling half v2.6.0 [INFO] [stderr] Compiling num-bigint v0.4.6 [INFO] [stderr] Compiling num-iter v0.1.45 [INFO] [stderr] Compiling tokio v1.47.1 [INFO] [stderr] Compiling futures-util v0.3.31 [INFO] [stderr] Compiling zstd-sys v2.0.13+zstd.1.5.6 [INFO] [stderr] Compiling comfy-table v7.2.1 [INFO] [stderr] Compiling atoi v2.0.0 [INFO] [stderr] Compiling flatbuffers v24.12.23 [INFO] [stderr] Compiling phf v0.12.1 [INFO] [stderr] Compiling zstd-safe v7.2.1 [INFO] [stderr] Compiling twox-hash v2.1.2 [INFO] [stderr] Compiling alloc-no-stdlib v2.0.4 [INFO] [stderr] Compiling lz4_flex v0.11.5 [INFO] [stderr] Compiling snafu-derive v0.8.9 [INFO] [stderr] Compiling form_urlencoded v1.2.2 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling alloc-stdlib v0.2.2 [INFO] [stderr] Compiling lexical-write-integer v1.0.6 [INFO] [stderr] Compiling lexical-parse-integer v1.0.6 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Compiling brotli-decompressor v4.0.3 [INFO] [stderr] Compiling url v2.5.7 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling serde_json v1.0.145 [INFO] [stderr] Compiling parking_lot v0.12.4 [INFO] [stderr] Compiling lexical-write-float v1.0.6 [INFO] [stderr] Compiling lexical-parse-float v1.0.6 [INFO] [stderr] Compiling ordered-float v2.10.1 [INFO] [stderr] Compiling integer-encoding v3.0.4 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling lexical-core v1.0.6 [INFO] [stderr] Compiling thrift v0.17.0 [INFO] [stderr] Compiling sqlparser_derive v0.2.2 [INFO] [stderr] Compiling seq-macro v0.3.6 [INFO] [stderr] Compiling num v0.4.3 [INFO] [stderr] Compiling brotli v7.0.0 [INFO] [stderr] Compiling arrow-buffer v53.4.1 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling rustix v1.1.2 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling dashmap v6.1.0 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling sqlparser v0.51.0 [INFO] [stderr] Compiling blake3 v1.8.2 [INFO] [stderr] Compiling bstr v1.12.0 [INFO] [stderr] Compiling arrow-data v53.4.1 [INFO] [stderr] Compiling futures-executor v0.3.31 [INFO] [stderr] Compiling snafu v0.8.9 [INFO] [stderr] Compiling futures v0.3.31 [INFO] [stderr] Compiling tokio-util v0.7.16 [INFO] [stderr] Compiling object_store v0.11.2 [INFO] [stderr] Compiling datafusion-common-runtime v43.0.0 [INFO] [stderr] Compiling noodles-core v0.15.0 [INFO] [stderr] Compiling md-5 v0.10.6 [INFO] [stderr] Compiling blake2 v0.10.6 [INFO] [stderr] Compiling uuid v1.18.1 [INFO] [stderr] Compiling noodles-bgzf v0.34.0 [INFO] [stderr] Compiling bzip2 v0.5.2 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling tempfile v3.23.0 [INFO] [stderr] Compiling noodles-csi v0.41.0 [INFO] [stderr] Compiling noodles-tabix v0.47.0 [INFO] [stderr] Compiling noodles-vcf v0.69.0 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling arrow-array v53.4.1 [INFO] [stderr] Compiling zstd v0.13.3 [INFO] [stderr] Compiling noodles-bcf v0.65.0 [INFO] [stderr] Compiling async-compression v0.4.19 [INFO] [stderr] Compiling noodles v0.86.0 [INFO] [stderr] Compiling arrow-select v53.4.1 [INFO] [stderr] Compiling arrow-arith v53.4.1 [INFO] [stderr] Compiling arrow-row v53.4.1 [INFO] [stderr] Compiling arrow-cast v53.4.1 [INFO] [stderr] Compiling arrow-string v53.4.1 [INFO] [stderr] Compiling arrow-ord v53.4.1 [INFO] [stderr] Compiling arrow-ipc v53.4.1 [INFO] [stderr] Compiling arrow-csv v53.4.1 [INFO] [stderr] Compiling arrow-json v53.4.1 [INFO] [stderr] Compiling parquet v53.4.1 [INFO] [stderr] Compiling arrow v53.4.1 [INFO] [stderr] Compiling datafusion-common v43.0.0 [INFO] [stderr] Compiling datafusion-expr-common v43.0.0 [INFO] [stderr] Compiling datafusion-physical-expr-common v43.0.0 [INFO] [stderr] Compiling datafusion-functions-window-common v43.0.0 [INFO] [stderr] Compiling datafusion-functions-aggregate-common v43.0.0 [INFO] [stderr] Compiling datafusion-expr v43.0.0 [INFO] [stderr] Compiling datafusion-physical-expr v43.0.0 [INFO] [stderr] Compiling datafusion-execution v43.0.0 [INFO] [stderr] Compiling datafusion-sql v43.0.0 [INFO] [stderr] Compiling datafusion-functions v43.0.0 [INFO] [stderr] Compiling datafusion-physical-plan v43.0.0 [INFO] [stderr] Compiling datafusion-functions-aggregate v43.0.0 [INFO] [stderr] Compiling datafusion-functions-window v43.0.0 [INFO] [stderr] Compiling datafusion-optimizer v43.0.0 [INFO] [stderr] Compiling datafusion-functions-nested v43.0.0 [INFO] [stderr] Compiling datafusion-catalog v43.0.0 [INFO] [stderr] Compiling datafusion-physical-optimizer v43.0.0 [INFO] [stderr] Compiling datafusion v43.0.0 [INFO] [stderr] Compiling exon-common v0.32.4 [INFO] [stderr] Compiling exon-vcf v0.32.4 [INFO] [stderr] Compiling exon-bcf v0.32.4 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 01s [INFO] running `Command { std: "docker" "inspect" "ab77af67ae5f8eb019455a773b5975f6dedc4f4582e4a44e9a3617eb97c9fbc8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ab77af67ae5f8eb019455a773b5975f6dedc4f4582e4a44e9a3617eb97c9fbc8", kill_on_drop: false }` [INFO] [stdout] ab77af67ae5f8eb019455a773b5975f6dedc4f4582e4a44e9a3617eb97c9fbc8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2f273323d8025cf31ae43a468a344a93f3372fef00591135ce6ff17d5c7cd020 [INFO] running `Command { std: "docker" "start" "-a" "2f273323d8025cf31ae43a468a344a93f3372fef00591135ce6ff17d5c7cd020", kill_on_drop: false }` [INFO] [stderr] Compiling exon-bcf v0.32.4 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.97s [INFO] running `Command { std: "docker" "inspect" "2f273323d8025cf31ae43a468a344a93f3372fef00591135ce6ff17d5c7cd020", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2f273323d8025cf31ae43a468a344a93f3372fef00591135ce6ff17d5c7cd020", kill_on_drop: false }` [INFO] [stdout] 2f273323d8025cf31ae43a468a344a93f3372fef00591135ce6ff17d5c7cd020 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+1.90.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] e440d1574e81889fa08f4d28ccecc3fd152b02f0a1e6668c342e85fb8e81971f [INFO] running `Command { std: "docker" "start" "-a" "e440d1574e81889fa08f4d28ccecc3fd152b02f0a1e6668c342e85fb8e81971f", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.17s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/exon_bcf-0f01b6fdd61a0b09) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests exon_bcf [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "e440d1574e81889fa08f4d28ccecc3fd152b02f0a1e6668c342e85fb8e81971f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e440d1574e81889fa08f4d28ccecc3fd152b02f0a1e6668c342e85fb8e81971f", kill_on_drop: false }` [INFO] [stdout] e440d1574e81889fa08f4d28ccecc3fd152b02f0a1e6668c342e85fb8e81971f