[INFO] fetching crate lib3dmol 0.4.0... [INFO] documenting lib3dmol-0.4.0 against beta-2025-04-13 for beta-1.87-rustdoc-1 [INFO] extracting crate lib3dmol 0.4.0 into /workspace/builds/worker-5-tc2/source [INFO] validating manifest of crates.io crate lib3dmol 0.4.0 on toolchain beta-2025-04-13 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-04-13" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate lib3dmol 0.4.0 [INFO] finished tweaking crates.io crate lib3dmol 0.4.0 [INFO] tweaked toml for crates.io crate lib3dmol 0.4.0 written to /workspace/builds/worker-5-tc2/source/Cargo.toml [INFO] crate crates.io crate lib3dmol 0.4.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-04-13" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-04-13" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4900e4fa9475f7d06376e1e0637ba7fd4db539b3be670e584d32c8250ea6459e [INFO] running `Command { std: "docker" "start" "-a" "4900e4fa9475f7d06376e1e0637ba7fd4db539b3be670e584d32c8250ea6459e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4900e4fa9475f7d06376e1e0637ba7fd4db539b3be670e584d32c8250ea6459e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4900e4fa9475f7d06376e1e0637ba7fd4db539b3be670e584d32c8250ea6459e", kill_on_drop: false }` [INFO] [stdout] 4900e4fa9475f7d06376e1e0637ba7fd4db539b3be670e584d32c8250ea6459e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-04-13" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] df99978909f0783ae5baed8fa89bddbd63ead7718e7b0e7a337de332973f963f [INFO] running `Command { std: "docker" "start" "-a" "df99978909f0783ae5baed8fa89bddbd63ead7718e7b0e7a337de332973f963f", kill_on_drop: false }` [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking lib3dmol v0.4.0 (/opt/rustwide/workdir) [INFO] [stderr] Documenting lib3dmol v0.4.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unresolved link to `Structure` [INFO] [stdout] --> src/lib.rs:5:34 [INFO] [stdout] | [INFO] [stdout] 5 | //! A file is represented as a [`Structure`] [INFO] [stdout] | ^^^^^^^^^ no item named `Structure` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Structure` [INFO] [stdout] --> src/lib.rs:6:23 [INFO] [stdout] | [INFO] [stdout] 6 | //! You can create a [Structure] by parsing with [`read_pdb`] function. Then you can add filters on your Structure. [INFO] [stdout] | ^^^^^^^^^ no item named `Structure` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `read_pdb` [INFO] [stdout] --> src/lib.rs:6:52 [INFO] [stdout] | [INFO] [stdout] 6 | //! You can create a [Structure] by parsing with [`read_pdb`] function. Then you can add filters on your Structure. [INFO] [stdout] | ^^^^^^^^ no item named `read_pdb` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Structure` [INFO] [stdout] --> src/build/mod.rs:2:64 [INFO] [stdout] | [INFO] [stdout] 2 | //! Used to test functions or to build examples. It return a [`Structure`] containing the molecule. [INFO] [stdout] | ^^^^^^^^^ no item named `Structure` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Structure` [INFO] [stdout] --> src/build/residue.rs:1:29 [INFO] [stdout] | [INFO] [stdout] 1 | //! Build amino acid as a [`Structure`] [INFO] [stdout] | ^^^^^^^^^ no item named `Structure` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Structure` [INFO] [stdout] --> src/build/residue.rs:8:69 [INFO] [stdout] | [INFO] [stdout] 8 | /// Build a residue according to its [`ResidueType`] and return a [`Structure`] [INFO] [stdout] | ^^^^^^^^^ no item named `Structure` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Structure` [INFO] [stdout] --> src/parser/mod.rs:1:51 [INFO] [stdout] | [INFO] [stdout] 1 | //! Functions to parse files or text and create [`Structure`] [INFO] [stdout] | ^^^^^^^^^ no item named `Structure` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Residue` [INFO] [stdout] --> src/structures/atom.rs:3:50 [INFO] [stdout] | [INFO] [stdout] 3 | /// An [`Atom`] is a sub-structure linked to a [`Residue`]. [INFO] [stdout] | ^^^^^^^ no item named `Residue` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Protein` [INFO] [stdout] --> src/structures/chain.rs:5:50 [INFO] [stdout] | [INFO] [stdout] 5 | /// A [`Chain`] is a sub-structure linked to a [`Protein`]. [INFO] [stdout] | ^^^^^^^ no item named `Protein` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Vector` [INFO] [stdout] --> src/structures/structure.rs:162:22 [INFO] [stdout] | [INFO] [stdout] 162 | /// Generate a [`Vector`] of atoms index (u64) [INFO] [stdout] | ^^^^^^ no item named `Vector` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unclosed HTML tag `char` [INFO] [stdout] --> src/parser/read_pdb.rs:48:21 [INFO] [stdout] | [INFO] [stdout] 48 | /// Return an option [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::invalid_html_tags)]` on by default [INFO] [stdout] help: try marking as source code [INFO] [stdout] | [INFO] [stdout] 48 | /// Return an `option` [INFO] [stdout] | + + [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.98s [INFO] [stderr] Generated /opt/rustwide/target/doc/lib3dmol/index.html and 1 other file [INFO] running `Command { std: "docker" "inspect" "df99978909f0783ae5baed8fa89bddbd63ead7718e7b0e7a337de332973f963f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "df99978909f0783ae5baed8fa89bddbd63ead7718e7b0e7a337de332973f963f", kill_on_drop: false }` [INFO] [stdout] df99978909f0783ae5baed8fa89bddbd63ead7718e7b0e7a337de332973f963f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-04-13" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8250c9b8575e1449b3caf97f851a86eb3397732966dc5a7d7fe0a87705f91b22 [INFO] running `Command { std: "docker" "start" "-a" "8250c9b8575e1449b3caf97f851a86eb3397732966dc5a7d7fe0a87705f91b22", kill_on_drop: false }` [INFO] [stderr] Documenting lib3dmol v0.4.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unresolved link to `Structure` [INFO] [stdout] --> src/lib.rs:5:34 [INFO] [stdout] | [INFO] [stdout] 5 | //! A file is represented as a [`Structure`] [INFO] [stdout] | ^^^^^^^^^ no item named `Structure` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Structure` [INFO] [stdout] --> src/lib.rs:6:23 [INFO] [stdout] | [INFO] [stdout] 6 | //! You can create a [Structure] by parsing with [`read_pdb`] function. Then you can add filters on your Structure. [INFO] [stdout] | ^^^^^^^^^ no item named `Structure` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `read_pdb` [INFO] [stdout] --> src/lib.rs:6:52 [INFO] [stdout] | [INFO] [stdout] 6 | //! You can create a [Structure] by parsing with [`read_pdb`] function. Then you can add filters on your Structure. [INFO] [stdout] | ^^^^^^^^ no item named `read_pdb` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Structure` [INFO] [stdout] --> src/build/mod.rs:2:64 [INFO] [stdout] | [INFO] [stdout] 2 | //! Used to test functions or to build examples. It return a [`Structure`] containing the molecule. [INFO] [stdout] | ^^^^^^^^^ no item named `Structure` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Structure` [INFO] [stdout] --> src/build/residue.rs:1:29 [INFO] [stdout] | [INFO] [stdout] 1 | //! Build amino acid as a [`Structure`] [INFO] [stdout] | ^^^^^^^^^ no item named `Structure` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Structure` [INFO] [stdout] --> src/build/residue.rs:8:69 [INFO] [stdout] | [INFO] [stdout] 8 | /// Build a residue according to its [`ResidueType`] and return a [`Structure`] [INFO] [stdout] | ^^^^^^^^^ no item named `Structure` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Structure` [INFO] [stdout] --> src/parser/mod.rs:1:51 [INFO] [stdout] | [INFO] [stdout] 1 | //! Functions to parse files or text and create [`Structure`] [INFO] [stdout] | ^^^^^^^^^ no item named `Structure` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Residue` [INFO] [stdout] --> src/structures/atom.rs:3:50 [INFO] [stdout] | [INFO] [stdout] 3 | /// An [`Atom`] is a sub-structure linked to a [`Residue`]. [INFO] [stdout] | ^^^^^^^ no item named `Residue` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Protein` [INFO] [stdout] --> src/structures/chain.rs:5:50 [INFO] [stdout] | [INFO] [stdout] 5 | /// A [`Chain`] is a sub-structure linked to a [`Protein`]. [INFO] [stdout] | ^^^^^^^ no item named `Protein` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `Vector` [INFO] [stdout] --> src/structures/structure.rs:162:22 [INFO] [stdout] | [INFO] [stdout] 162 | /// Generate a [`Vector`] of atoms index (u64) [INFO] [stdout] | ^^^^^^ no item named `Vector` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.36s [INFO] [stderr] Generated /opt/rustwide/target/doc/lib3dmol/index.html [INFO] running `Command { std: "docker" "inspect" "8250c9b8575e1449b3caf97f851a86eb3397732966dc5a7d7fe0a87705f91b22", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8250c9b8575e1449b3caf97f851a86eb3397732966dc5a7d7fe0a87705f91b22", kill_on_drop: false }` [INFO] [stdout] 8250c9b8575e1449b3caf97f851a86eb3397732966dc5a7d7fe0a87705f91b22